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Conserved domains on  [gi|2184757246|ref|WP_236373586|]
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iron ABC transporter permease [Pseudomonas salomonii]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 20-331 3.17e-97

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 289.66  E-value: 3.17e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  20 AIGETAIEPQVVLQVLAnklwaaGYVLDPIDEGVVWNYRLTRALVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGA 99
Cdd:COG0609     3 SLGAVPISLSDVLRALL------GPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 100 STGAVLVALMGVGGGLISLSAGAFVGAMAAFALVILLARASGSASGTgQIILAGIAGSQLFNALTAFLITkSASSEQARG 179
Cdd:COG0609    77 ALGAVLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGGGLSPL-RLVLAGVAVSALFSALTSLLLL-LADPEQLRS 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 180 IMFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSI 259
Cdd:COG0609   155 IVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPI 234

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2184757246 260 GFVGLVIPHAVRLLLGTGHSRLLPASALGGALFLIAADVLSRTLIKGQVIPVGVVTALVGAPVFALILIGRR 331
Cdd:COG0609   235 GFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 20-331 3.17e-97

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 289.66  E-value: 3.17e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  20 AIGETAIEPQVVLQVLAnklwaaGYVLDPIDEGVVWNYRLTRALVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGA 99
Cdd:COG0609     3 SLGAVPISLSDVLRALL------GPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 100 STGAVLVALMGVGGGLISLSAGAFVGAMAAFALVILLARASGSASGTgQIILAGIAGSQLFNALTAFLITkSASSEQARG 179
Cdd:COG0609    77 ALGAVLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGGGLSPL-RLVLAGVAVSALFSALTSLLLL-LADPEQLRS 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 180 IMFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSI 259
Cdd:COG0609   155 IVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPI 234

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2184757246 260 GFVGLVIPHAVRLLLGTGHSRLLPASALGGALFLIAADVLSRTLIKGQVIPVGVVTALVGAPVFALILIGRR 331
Cdd:COG0609   235 GFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 11-328 1.60e-72

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 227.02  E-value: 1.60e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  11 LLMAVLAGTAIGETAIEPQVVLQVLANKLwaagyvlDPIDEGVVWNYRLTRALVAAACGAGLATCGVILQSLLRNPLADP 90
Cdd:pfam01032   2 LLLLILLSLFIGAVKISPSDVFSALLGGD-------DSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  91 YLLGISAGASTGAVLVALMGVGGGLISLSAGAFVGAMAAFALVILLARASGSASGTgQIILAGIAGSQLFNALTAFLITK 170
Cdd:pfam01032  75 SILGISSGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRGGASPL-RLILAGIAVSALLSALTSLLLLL 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 171 sASSEQARGIMFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTA 250
Cdd:pfam01032 154 -LNPEALQSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTA 232

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2184757246 251 VMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLPASALGGALFLIAADVLSRTLIKGQVIPVGVVTALVGAPVFALILI 328
Cdd:pfam01032 233 ASVAVVGPIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLL 310
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 8-331 8.25e-70

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 220.50  E-value: 8.25e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246   8 LTVLLMAVLAGTAIGETAIEPQVVLQVLANKLWAAGYVLDPIDEGVVWNYRLTRALVAAACGAGLATCGVILQSLLRNPL 87
Cdd:TIGR03869   3 LASLVVAVTIGPADISVGEVWRSVAAHLGRGEGFPGVALSRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  88 ADPYLLGISAGASTGAVLVALMGVGgglISLSAGAFVGAMAAFALVILLARASGSASGTgQIILAGIAGSQLFNALTAFL 167
Cdd:TIGR03869  83 ADPYLLGLSSGASLGAVAVLVLGVA---VLLPVAAFAGALLALAATLGLARTLGTLTPT-RTILAGLAVSQLCAAVTSFV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 168 ITKSASSEQARGIMFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAAL 247
Cdd:TIGR03869 159 IFWSATGDSYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVAL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 248 VTAVMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLPASALGGALFLIAADVLSRTLIKGQVIPVGVVTALVGAPVFALIL 327
Cdd:TIGR03869 239 LTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLL 318


                  ....
gi 2184757246 328 IGRR 331
Cdd:TIGR03869 319 YRSR 322
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
30-333 1.57e-56

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 194.29  E-value: 1.57e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  30 VVLQVLANKLWAAGYVLDPIDEGVVWNYRLTRALVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGASTGAVLVALM 109
Cdd:PRK10577  369 LVVALSFGRDAHGWNWLSGQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFL 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 110 GVGGGLISLSAGAFVGAMAAFALVILLARASGSASGtgQIILAGIAGSQLFNALTAFLITKSasSEQARGIMFWLLGNLS 189
Cdd:PRK10577  449 VPGAGFGWLLAAALLGALAALALILLLARRGGFAPE--RLLLTGIALSALFTALIQLLLASG--DPRAAQLLTWLSGSTY 524

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 190 GVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSIGFVGLVIPHA 269
Cdd:PRK10577  525 GVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMAPHL 604

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2184757246 270 VRLLLGTGHSRLLPASALGGALFLIAADVLSRTLIKGQVIPVGVVTALVGAPVFALILIGRRNA 333
Cdd:PRK10577  605 ARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSRRR 668
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 63-327 1.30e-46

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 158.49  E-value: 1.30e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  63 LVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGASTGAVLVALMGVGGGLISLSAGAFVGAMAAFALVILLARASGS 142
Cdd:cd06550     2 LAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGGL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 143 AsgTGQIILAGIAGSQLFNALTAFLITKSASSEQArgIMFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTF 222
Cdd:cd06550    82 S--PSKLILIGIVLSAFFSAGVILISLLSDDSLQD--LNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTF 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 223 GTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLPASALGGALFLIAADVLSRT 302
Cdd:cd06550   158 DEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRT 237

                         250       260
                  ....*....|....*....|....*
gi 2184757246 303 LIKGQViPVGVVTALVGAPVFALIL 327
Cdd:cd06550   238 LLPSEL-PVGPVTALLGAPYFLYLL 261
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 20-331 3.17e-97

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 289.66  E-value: 3.17e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  20 AIGETAIEPQVVLQVLAnklwaaGYVLDPIDEGVVWNYRLTRALVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGA 99
Cdd:COG0609     3 SLGAVPISLSDVLRALL------GPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 100 STGAVLVALMGVGGGLISLSAGAFVGAMAAFALVILLARASGSASGTgQIILAGIAGSQLFNALTAFLITkSASSEQARG 179
Cdd:COG0609    77 ALGAVLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGGGLSPL-RLVLAGVAVSALFSALTSLLLL-LADPEQLRS 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 180 IMFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSI 259
Cdd:COG0609   155 IVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPI 234

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2184757246 260 GFVGLVIPHAVRLLLGTGHSRLLPASALGGALFLIAADVLSRTLIKGQVIPVGVVTALVGAPVFALILIGRR 331
Cdd:COG0609   235 GFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 11-328 1.60e-72

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 227.02  E-value: 1.60e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  11 LLMAVLAGTAIGETAIEPQVVLQVLANKLwaagyvlDPIDEGVVWNYRLTRALVAAACGAGLATCGVILQSLLRNPLADP 90
Cdd:pfam01032   2 LLLLILLSLFIGAVKISPSDVFSALLGGD-------DSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  91 YLLGISAGASTGAVLVALMGVGGGLISLSAGAFVGAMAAFALVILLARASGSASGTgQIILAGIAGSQLFNALTAFLITK 170
Cdd:pfam01032  75 SILGISSGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRGGASPL-RLILAGIAVSALLSALTSLLLLL 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 171 sASSEQARGIMFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTA 250
Cdd:pfam01032 154 -LNPEALQSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTA 232

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2184757246 251 VMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLPASALGGALFLIAADVLSRTLIKGQVIPVGVVTALVGAPVFALILI 328
Cdd:pfam01032 233 ASVAVVGPIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLL 310
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 8-331 8.25e-70

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 220.50  E-value: 8.25e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246   8 LTVLLMAVLAGTAIGETAIEPQVVLQVLANKLWAAGYVLDPIDEGVVWNYRLTRALVAAACGAGLATCGVILQSLLRNPL 87
Cdd:TIGR03869   3 LASLVVAVTIGPADISVGEVWRSVAAHLGRGEGFPGVALSRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  88 ADPYLLGISAGASTGAVLVALMGVGgglISLSAGAFVGAMAAFALVILLARASGSASGTgQIILAGIAGSQLFNALTAFL 167
Cdd:TIGR03869  83 ADPYLLGLSSGASLGAVAVLVLGVA---VLLPVAAFAGALLALAATLGLARTLGTLTPT-RTILAGLAVSQLCAAVTSFV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 168 ITKSASSEQARGIMFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAAL 247
Cdd:TIGR03869 159 IFWSATGDSYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVAL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 248 VTAVMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLPASALGGALFLIAADVLSRTLIKGQVIPVGVVTALVGAPVFALIL 327
Cdd:TIGR03869 239 LTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLL 318


                  ....
gi 2184757246 328 IGRR 331
Cdd:TIGR03869 319 YRSR 322
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 45-334 1.27e-59

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 194.30  E-value: 1.27e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  45 VLDPIDEGVVWNYRLTRALVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGASTGAVLVALMGVG-GGLISLSAGAF 123
Cdd:COG4139    42 WLSEAWQLFVWQLRLPRTLAAVLVGASLAVSGAVMQALFENPLAEPGLLGISNGAGVGLVLVVLLGGGlLPPWLLSLAAI 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 124 VGAMAAFALVILLARASGSasgTGQIILAGIAGSQLFNALTAFLITKSaSSEQARGIMFWLLGNLSGVRWPSVWLAVPVA 203
Cdd:COG4139   122 AGALLVTLLLLAFARRRLS---NARLLLIGVALGIICSAIMTWAVYFS-SSLDLRQLMYWMMGSFGGVDWRQLWLLLALL 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 204 VAGLAVCLWHRRaLDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLP 283
Cdd:COG4139   198 PVLLWLCLQGKP-LNLLLLGENQARQLGLSVHRWRNLLVLATGLLVGVSVALAGPIGFVGLVVPHLLRLLGTTDHRFLLP 276

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2184757246 284 ASALGGALFLIAADVLSRTLIKGQVIPVGVVTALVGAPVFALILIGRRNAR 334
Cdd:COG4139   277 ACALAGAALLLLADIIARLALSSAELPIGVVTATLGAPVFIWLLLRRRKIR 327
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
30-333 1.57e-56

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 194.29  E-value: 1.57e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  30 VVLQVLANKLWAAGYVLDPIDEGVVWNYRLTRALVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGASTGAVLVALM 109
Cdd:PRK10577  369 LVVALSFGRDAHGWNWLSGQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFL 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 110 GVGGGLISLSAGAFVGAMAAFALVILLARASGSASGtgQIILAGIAGSQLFNALTAFLITKSasSEQARGIMFWLLGNLS 189
Cdd:PRK10577  449 VPGAGFGWLLAAALLGALAALALILLLARRGGFAPE--RLLLTGIALSALFTALIQLLLASG--DPRAAQLLTWLSGSTY 524

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 190 GVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSIGFVGLVIPHA 269
Cdd:PRK10577  525 GVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMAPHL 604

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2184757246 270 VRLLLGTGHSRLLPASALGGALFLIAADVLSRTLIKGQVIPVGVVTALVGAPVFALILIGRRNA 333
Cdd:PRK10577  605 ARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSRRR 668
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 46-334 6.67e-54

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 179.77  E-value: 6.67e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  46 LDPIDEGVVWNYRLTRALVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGASTGAVLVALMGVGG-GLISLSAGAFV 124
Cdd:PRK03784   46 LSPRGELFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLlPPWALSLCAIA 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 125 GAMAAFALVILLARASgsASGTGQIILAGIAGSQLFNALTAFLITKSaSSEQARGIMFWLLGNLSGVRWPSVWLAVPVAV 204
Cdd:PRK03784  126 GALLITLILLRFARRH--RLSTSRLLLAGVALGIICSALMTWAVYFS-TSLDLRQLMYWMMGGFGGVDWRQSWLMLALLP 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 205 AGLAVClWHRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLPA 284
Cdd:PRK03784  203 VLIWLC-CQGRPLNMLALGEISARQLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPG 281

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2184757246 285 SALGGALFLIAADVLSRTLIKGQVIPVGVVTALVGAPVFALILIGRRNAR 334
Cdd:PRK03784  282 CALAGASLLLLADIVARLALASAELPIGVVTATLGAPVFIWLLLRSHRAR 331
btuC PRK09535
cobalamin ABC transporter permease BtuC;
7-330 4.81e-50

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 170.70  E-value: 4.81e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246   7 ALTVLLMA-VLAGTAIGETAIEPQVVLQVLANKL----------------------------WAA--GYVLDPIDEGVVW 55
Cdd:PRK09535   13 GLTALLVAvVLVSAAIGPVRIPPRTVAMALLNAVavpvgvavtthgvpvlsvglslpapdleYASpfSFAVPETAQTIVL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  56 NYRLTRALVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGASTGAVLVALMGVGGGLiSLSAGAFVGAMAAFALVIL 135
Cdd:PRK09535   93 QIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVLPLAVPF-GLQAAAFAGALVAAFGVYA 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 136 LARASGSaSGTGQIILAGIAGSQLFNALTAFLITKSAssEQARGIMFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRR 215
Cdd:PRK09535  172 IATENGR-TPVATLLLAGVAVQTFLGAVISYLLLHSG--ESLRRAVYWLMGHLHGSTWSDVEVALPVVVVGFVVLLAYAR 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 216 ALDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLPASALGGALFLIA 295
Cdd:PRK09535  249 DLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSALAGASFLVA 328

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2184757246 296 ADVLSRTliKGQVIPVGVVTALVGAPVFALILIGR 330
Cdd:PRK09535  329 TDTVARS--GPAEVPVGIVTAALGAPFFLYLLRTR 361
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
1-334 1.45e-47

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 169.63  E-value: 1.45e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246   1 MMRTLLALTVLLMAVLAGTAIGETAIEPQVVLQVLANKLWAAGyvLDPIDEGVVWNYRLTRALVAAACGAGLATCGVILQ 80
Cdd:PRK10577    7 RRRARLPALLLALLLLLALALTLTQLSAALPLSQWLQALWGPD--ADDLEQLLLHYSRLPRLAIALLVGAALGLAGALLQ 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  81 SLLRNPLADPYLLGISAGASTGAVLVALMGVGGGLISLSAGAFVGAMAAFALVILLARASGSASGTgqIILAGIAGSQLF 160
Cdd:PRK10577   85 QVLRNPLASPTTLGVAAGAQLALVLATLFAPALLALASQLAAFAGGLLAAALVFALAGGKRLSPLR--LVLAGMVVSLYL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 161 NALTAFLItkSASSEQARGIMFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTFGTDSAASLGIPVRRVQFV 240
Cdd:PRK10577  163 GALTTLLL--LFNEQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLA 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 241 LVGCAALVTAVMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLPASALGGALFLIAADVLSRTL--IKGQVIPVGVVTALV 318
Cdd:PRK10577  241 ALALAVLLSAAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLagVGGELLPTGAVTALI 320

                         330
                  ....*....|....*.
gi 2184757246 319 GAPVFALILIGRRNAR 334
Cdd:PRK10577  321 GAPLLLWLLPRLRSAQ 336
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 63-327 1.30e-46

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 158.49  E-value: 1.30e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  63 LVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGASTGAVLVALMGVGGGLISLSAGAFVGAMAAFALVILLARASGS 142
Cdd:cd06550     2 LAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGGL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 143 AsgTGQIILAGIAGSQLFNALTAFLITKSASSEQArgIMFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTF 222
Cdd:cd06550    82 S--PSKLILIGIVLSAFFSAGVILISLLSDDSLQD--LNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTF 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 223 GTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLPASALGGALFLIAADVLSRT 302
Cdd:cd06550   158 DEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRT 237

                         250       260
                  ....*....|....*....|....*
gi 2184757246 303 LIKGQViPVGVVTALVGAPVFALIL 327
Cdd:cd06550   238 LLPSEL-PVGPVTALLGAPYFLYLL 261
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
47-331 1.29e-44

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 155.24  E-value: 1.29e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  47 DPIDEGVVWNYRLTRALVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGASTGAVLV-ALMGVGGGLISLSAGAFVG 125
Cdd:PRK11228   40 PTLPEALVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMALTsALSPTPFAGYSLAFIAACG 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 126 AMAAFALVILLARASGSASGTGQIILAGIAGSQLFNALTAflITKSASSEQARGIMFWLLGNLSGVRWPSVWLAVPVAVA 205
Cdd:PRK11228  120 GGLSWLLVMTAGGGWRHTHDRNRLILAGIALSALCMALTR--ITLLLAEDHAYGIFYWLAGGVSHARWQEVWQLLPFVVT 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 206 GLAVCLWHRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLPAS 285
Cdd:PRK11228  198 AVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMS 277

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 2184757246 286 ALGGALFLIAADVLSRTLIKGQVIPVGVVTALVGAPVFALILIGRR 331
Cdd:PRK11228  278 MLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCFVWLARRRG 323
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
53-331 3.82e-44

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 153.66  E-value: 3.82e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  53 VVWNYRLTRALVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGASTGAVLVALMGVGGGLISLSAGAFVGAMAAFAL 132
Cdd:PRK09777   46 VLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASLASVGALLLFPSLPVMWLPLLAFIGGMAGLIL 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 133 VILLArasgSASGTGQIILAGIAGSQLFNALTAFLITksASSEQARGIMFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLW 212
Cdd:PRK09777  126 LKMLA----GTHQPMKLALTGVALSALWASLTDYLML--SRPQDINNALLWLTGSLWGRDWSFVKVALPWLILLLPLSLS 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 213 HRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLPASALGGALF 292
Cdd:PRK09777  200 FCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTATGVAACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALL 279

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2184757246 293 LIAADVLSRTLIKGQVIPVGVVTALVGAPVFALILIGRR 331
Cdd:PRK09777  280 LLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVRMR 318
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
53-328 1.98e-34

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 128.29  E-value: 1.98e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  53 VVWNYRLTRALVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGASTGaVLVALMGVGGGLISLSAGAFVGAMAAFAL 132
Cdd:PRK10440   54 VVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSG-VLVAMVLFGQDLTAIALAAMAGGIVTSLL 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 133 VILLARASGSAsgTGQIILAGIAGSQLFNALTAFLITkSASSEQARGIMFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLW 212
Cdd:PRK10440  133 VWLLAWRNGID--TFRLIIIGIGVRAMLVAFNTWLLL-KASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAAL 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 213 HRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLpASALGGALF 292
Cdd:PRK10440  210 LVRRMRLLEMGDDTACALGVSVERSRLLLMLVAVVLTAAATALAGPISFIALVAPHIARRLSGTARWGLT-QAALCGALL 288

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2184757246 293 LIAADVLSRTLIKGQVIPVGVVTALVGAPVFALILI 328
Cdd:PRK10440  289 LLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLI 324
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
8-334 4.14e-30

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 117.12  E-value: 4.14e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246   8 LTVLLMAVLAGTAIGETAIEPQVVLQVLANKLWAAgyvldpiDEGVVWNYRLTRALVAAACGAGLATCGVILQSLLRNPL 87
Cdd:PRK10441   17 LLLLIIATALSLLIGAKSLPASVVLEALSGTCQSA-------DCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246  88 ADPYLLGISAGASTGAVL-VALMGVGGGLISLsAGAFVGAMAAFALVILLARASGSASGTGQIILAGIA-GSQLFNALTA 165
Cdd:PRK10441   90 ADPGLLGVNAGASFAIVLgAALFGYSSAQEQL-AMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVAlAAVLEGLTSG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 166 FLITKSASSEQARgimFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTFGTDSAASLGIPVRRVQFVLVGCA 245
Cdd:PRK10441  169 IALLNPDVYDQLR---FWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 246 ALVTAVMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLPASALGGALFLIAADVLSRTLIKGQvIPVGVVTALVGAPVfaL 325
Cdd:PRK10441  246 TVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLVPGE-LRVSVVSAFIGAPV--L 322


                  ....*....
gi 2184757246 326 ILIGRRNAR 334
Cdd:PRK10441  323 IFLVRRKTR 331
ZnuB COG1108
ABC-type Mn2+/Zn2+ transport system, permease component [Inorganic ion transport and ...
 106-331 1.20e-09

ABC-type Mn2+/Zn2+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440725  Cd Length: 260  Bit Score: 58.13  E-value: 1.20e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 106 VALMGVGGGL---ISLSAGAFVGAMAAFALVILLARASGSASGTGQIILAGIAGsqlfnALTAFLITKSASSeqARGIMF 182
Cdd:COG1108    40 AALPGVALAFllgLSPLLGALVAGLLAALLIGLLRRRSRLKEDTAIGIVFSGGF-----ALGVLLISLVPGS--AVDLMS 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 183 WLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSIGFV 262
Cdd:COG1108   113 YLFGSILAVSRSDLLLLAVLAAVVLLLLLLFYRELLLVSFDPELARASGLPVRLLHLLLLVLLALTVVAALQAVGALLVS 192

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 263 GL-VIPHAVRLLLGTGHSRLLPASALGGALFLIAADVLSRTLikgqVIPVGVVTALVGAPVFALILIGRR 331
Cdd:COG1108   193 ALlIIPAATARLLTRSLRRMLLLAVLIGVLSSVLGLYLSYYL----DLPTGPTIVLVAGLLFLLSLLFSP 258
ABC-3 pfam00950
ABC 3 transport family;
106-330 6.29e-06

ABC 3 transport family;


Pssm-ID: 334323  Cd Length: 258  Bit Score: 46.84  E-value: 6.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 106 VALMGVGGGL---ISLSAGAFVGAMAAFALVILLARASGSASGTGQIILAGiagsqLFNALTAFLITKSASSEQarGIMF 182
Cdd:pfam00950  41 AALPGVALAYflgINPAIGAFVFGLIAAVAMGYLKRKTRLKEDTAIGIVFS-----TFLALGLVLISLIPGSAV--DLDS 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2184757246 183 WLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTFGTDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSIGFV 262
Cdd:pfam00950 114 YLFGNILTISQQDLIQIAIITAVILILLLLFWKELLLITFDPDHAKVIGLPVQFLYLLLLALIALTIVVALQAVGAILVI 193

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2184757246 263 G-LVIPHAVRLLLGTGHSRLLPASALGGALFLIAADVLSRTLikgqVIPVGVVTALVGAPVFALILIGR 330
Cdd:pfam00950 194 AlLIIPAATARRLTRSFDSMLIIAILIGMVSCVAGLYLSYYF----DTSTGPVIVLIATLLFLISLAFA 258
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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