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Conserved domains on  [gi|2185697600|ref|WP_236660878|]
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metalloregulator ArsR/SmtB family transcription factor [Corynebacterium aurimucosum]

Protein Classification

helix-turn-helix transcriptional regulator( domain architecture ID 11457150)

helix-turn-helix (HTH) transcriptional regulator containing a DNA-binding HTH domain, may act as a transcriptional activator or as a transcriptional repressor

Gene Ontology:  GO:0003677|GO:0003700|GO:0006355
PubMed:  15808743|10473770|8831795

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG2345 COG2345
Predicted transcriptional regulator, ArsR family [Transcription];
3-205 4.44e-67

Predicted transcriptional regulator, ArsR family [Transcription];


:

Pssm-ID: 441914 [Multi-domain]  Cd Length: 217  Bit Score: 205.16  E-value: 4.44e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2185697600   3 LLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLTEVVHRRpsarpgqtAGRGRPAKHFRLTDQGRAQFGHAYDQLAA 82
Cdd:COG2345    21 LLKRAGPVTAAELAEALGLTPNAVRRHLDALEEEGLVERETER--------RGRGRPAKLYRLTEAGRARFPRAYDDLAV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2185697600  83 EALTALREAGGPEAVRHFAKARFERLVEDVTPLVEDEESVPEVARRLAEVLDAHGYAATVTSVGNGVQICQHHCPVAHVA 162
Cdd:COG2345    93 ALLDALRELLGEDAVERLARARGRRLAARYRPALAGAGSLEERLEALAELLSEEGYMAEVEEEDDGFQLCEHNCPFLEVA 172

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2185697600 163 AEHPELCEAEQEVFSALLGKHV-QPLASIADGHGICTTNIPLTP 205
Cdd:COG2345   173 EEHPVVCELELGLFEGLLGALVaERTATLADGDRRCTYRIPPRA 216
 
Name Accession Description Interval E-value
COG2345 COG2345
Predicted transcriptional regulator, ArsR family [Transcription];
3-205 4.44e-67

Predicted transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 441914 [Multi-domain]  Cd Length: 217  Bit Score: 205.16  E-value: 4.44e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2185697600   3 LLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLTEVVHRRpsarpgqtAGRGRPAKHFRLTDQGRAQFGHAYDQLAA 82
Cdd:COG2345    21 LLKRAGPVTAAELAEALGLTPNAVRRHLDALEEEGLVERETER--------RGRGRPAKLYRLTEAGRARFPRAYDDLAV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2185697600  83 EALTALREAGGPEAVRHFAKARFERLVEDVTPLVEDEESVPEVARRLAEVLDAHGYAATVTSVGNGVQICQHHCPVAHVA 162
Cdd:COG2345    93 ALLDALRELLGEDAVERLARARGRRLAARYRPALAGAGSLEERLEALAELLSEEGYMAEVEEEDDGFQLCEHNCPFLEVA 172

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2185697600 163 AEHPELCEAEQEVFSALLGKHV-QPLASIADGHGICTTNIPLTP 205
Cdd:COG2345   173 EEHPVVCELELGLFEGLLGALVaERTATLADGDRRCTYRIPPRA 216
HTH_ARSR cd00090
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ...
 1-46 7.07e-07

Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.


Pssm-ID: 238042 [Multi-domain]  Cd Length: 78  Bit Score: 45.37  E-value: 7.07e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2185697600   1 MLLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLTEVVHRRP 46
Cdd:cd00090    12 ILRLLLEGPLTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGR 57
HTH_ARSR smart00418
helix_turn_helix, Arsenical Resistance Operon Repressor;
1-73 1.88e-05

helix_turn_helix, Arsenical Resistance Operon Repressor;


Pssm-ID: 197713 [Multi-domain]  Cd Length: 66  Bit Score: 41.04  E-value: 1.88e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2185697600    1 MLLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLteVVHRRpsarpgqtagRGRPaKHFRLTDQGRAQF 73
Cdd:smart00418   2 ILKLLAEGELCVCELAEILGLSQSTVSHHLKKLREAGL--VESRR----------EGKR-VYYSLTDEKVADL 61
HTH_11 pfam08279
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
 2-38 7.12e-05

HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.


Pssm-ID: 429896 [Multi-domain]  Cd Length: 52  Bit Score: 39.34  E-value: 7.12e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2185697600   2 LLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGL 38
Cdd:pfam08279   6 LLLEARGPISGQELAEKLGVSRRTIRRDIKILEELGV 42
HTH_metalloreg NF033788
metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense ...
 1-49 6.53e-03

metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense toxic heavy metals such as arsenic or cadmium, and are released from DNA so that resistance factors will be expressed, include ArsR, SmtB, ZiaR, CadC, CadX, KmtR, etc. However, some members of this family, including the sporulation delaying system autorepressor SdpR and its family (see NF033789), may lack metal-binding cites and instead regulate other cellular processes.


Pssm-ID: 411368 [Multi-domain]  Cd Length: 76  Bit Score: 34.36  E-value: 6.53e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2185697600   1 MLLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLtevVHRRPSAR 49
Cdd:NF033788   16 ILELLAEGELCVCELAEALGLSQSAVSQHLKVLRDAGL---VTSRREGR 61
 
Name Accession Description Interval E-value
COG2345 COG2345
Predicted transcriptional regulator, ArsR family [Transcription];
3-205 4.44e-67

Predicted transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 441914 [Multi-domain]  Cd Length: 217  Bit Score: 205.16  E-value: 4.44e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2185697600   3 LLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLTEVVHRRpsarpgqtAGRGRPAKHFRLTDQGRAQFGHAYDQLAA 82
Cdd:COG2345    21 LLKRAGPVTAAELAEALGLTPNAVRRHLDALEEEGLVERETER--------RGRGRPAKLYRLTEAGRARFPRAYDDLAV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2185697600  83 EALTALREAGGPEAVRHFAKARFERLVEDVTPLVEDEESVPEVARRLAEVLDAHGYAATVTSVGNGVQICQHHCPVAHVA 162
Cdd:COG2345    93 ALLDALRELLGEDAVERLARARGRRLAARYRPALAGAGSLEERLEALAELLSEEGYMAEVEEEDDGFQLCEHNCPFLEVA 172

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2185697600 163 AEHPELCEAEQEVFSALLGKHV-QPLASIADGHGICTTNIPLTP 205
Cdd:COG2345   173 EEHPVVCELELGLFEGLLGALVaERTATLADGDRRCTYRIPPRA 216
MarR COG1846
DNA-binding transcriptional regulator, MarR family [Transcription];
1-110 8.85e-08

DNA-binding transcriptional regulator, MarR family [Transcription];


Pssm-ID: 441451 [Multi-domain]  Cd Length: 142  Bit Score: 49.58  E-value: 8.85e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2185697600   1 MLLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLtevVHRRPSArpgqtagRGRPAKHFRLTDQGRAQFgHAYDQL 80
Cdd:COG1846    44 LAALAEAGGLTQSELAERLGLTKSTVSRLLDRLEEKGL---VEREPDP-------EDRRAVLVRLTEKGRALL-EEARPA 112

                          90       100       110
                  ....*....|....*....|....*....|
gi 2185697600  81 AAEALTALREAGGPEAVRHFAKArFERLVE 110
Cdd:COG1846   113 LEALLAELLAGLSEEELEALLRL-LRRLAE 141
HTH_ARSR cd00090
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ...
 1-46 7.07e-07

Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.


Pssm-ID: 238042 [Multi-domain]  Cd Length: 78  Bit Score: 45.37  E-value: 7.07e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2185697600   1 MLLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLTEVVHRRP 46
Cdd:cd00090    12 ILRLLLEGPLTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGR 57
COG4742 COG4742
Predicted transcriptional regulator, contains HTH domain [Transcription];
1-90 1.21e-05

Predicted transcriptional regulator, contains HTH domain [Transcription];


Pssm-ID: 443776 [Multi-domain]  Cd Length: 267  Bit Score: 44.88  E-value: 1.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2185697600   1 MLLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLteVVHRRpsarpgqtagrgrpaKHFRLTDQGRaqfghaydqL 80
Cdd:COG4742    21 ILLLLAEGPKTRSELAESLDVSRSTILRQLKELEERGL--IERDD---------------GEYELTTLGR---------L 74

                          90
                  ....*....|
gi 2185697600  81 AAEALTALRE 90
Cdd:COG4742    75 VVEEMEPLLD 84
HTH_ARSR smart00418
helix_turn_helix, Arsenical Resistance Operon Repressor;
1-73 1.88e-05

helix_turn_helix, Arsenical Resistance Operon Repressor;


Pssm-ID: 197713 [Multi-domain]  Cd Length: 66  Bit Score: 41.04  E-value: 1.88e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2185697600    1 MLLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLteVVHRRpsarpgqtagRGRPaKHFRLTDQGRAQF 73
Cdd:smart00418   2 ILKLLAEGELCVCELAEILGLSQSTVSHHLKKLREAGL--VESRR----------EGKR-VYYSLTDEKVADL 61
ArsR COG0640
DNA-binding transcriptional regulator, ArsR family [Transcription];
1-49 2.02e-05

DNA-binding transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 440405 [Multi-domain]  Cd Length: 92  Bit Score: 41.80  E-value: 2.02e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2185697600   1 MLLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLtevVHRRPSAR 49
Cdd:COG0640    25 ILRLLAEGELCVGELAEALGLSQSTVSHHLKVLREAGL---VTSRREGR 70
COG4189 COG4189
Predicted transcriptional regulator, ArsR family [Transcription];
1-82 2.48e-05

Predicted transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 443343 [Multi-domain]  Cd Length: 97  Bit Score: 41.87  E-value: 2.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2185697600   1 MLLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLTEVVHRRpsarpgqtAGRGRPAKHFRLTDQGRAQFGHAYDQL 80
Cdd:COG4189    24 ILRLLAEEPLNVNELAEALGLPKSTVSYHIRKLEEAGLIRTEYKP--------GKRGRQKICYLRVDKILIVLPGLDESD 95


                  ..
gi 2185697600  81 AA 82
Cdd:COG4189    96 RE 97
HTH_11 pfam08279
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
 2-38 7.12e-05

HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.


Pssm-ID: 429896 [Multi-domain]  Cd Length: 52  Bit Score: 39.34  E-value: 7.12e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2185697600   2 LLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGL 38
Cdd:pfam08279   6 LLLEARGPISGQELAEKLGVSRRTIRRDIKILEELGV 42
HTH_MARR smart00347
helix_turn_helix multiple antibiotic resistance protein;
1-90 7.70e-05

helix_turn_helix multiple antibiotic resistance protein;


Pssm-ID: 197670 [Multi-domain]  Cd Length: 101  Bit Score: 40.27  E-value: 7.70e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2185697600    1 MLLLLKD-GPVTASYLGERLGLSAAGIRRHLDILVEEGLtevVHRRPSArpgqtagRGRPAKHFRLTDQGRAqfghAYDQ 79
Cdd:smart00347  15 VLRILYEeGPLSVSELAKRLGVSPSTVTRVLDRLEKKGL---VRREPSP-------EDRRSVLVSLTEEGRE----LIEQ 80

                           90
                   ....*....|.
gi 2185697600   80 LAAEALTALRE 90
Cdd:smart00347  81 LLEARSETLAE 91
HTH_20 pfam12840
Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in ...
 3-45 1.69e-04

Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.


Pssm-ID: 432824 [Multi-domain]  Cd Length: 61  Bit Score: 38.29  E-value: 1.69e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2185697600   3 LLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLTEVVHRR 45
Cdd:pfam12840  18 ALVGDEPLTASELARRLDISRNTLSYHLRKLEEAGLVEVVREG 60
COG3355 COG3355
Predicted transcriptional regulator [Transcription];
2-59 3.29e-04

Predicted transcriptional regulator [Transcription];


Pssm-ID: 442583 [Multi-domain]  Cd Length: 131  Bit Score: 39.18  E-value: 3.29e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2185697600   2 LLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLtevVHRRPSARPgqtaGRGRP 59
Cdd:COG3355    35 ILLENGEPLTVEELAEALDRSRSTVYRSLQKLLEAGL---VEREKRNLE----GGGYP 85
HTH_24 pfam13412
Winged helix-turn-helix DNA-binding;
3-38 5.60e-04

Winged helix-turn-helix DNA-binding;


Pssm-ID: 404317 [Multi-domain]  Cd Length: 45  Bit Score: 36.64  E-value: 5.60e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2185697600   3 LLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGL 38
Cdd:pfam13412   9 LLQENPRISQRELAERLGLSPSTVNRRLKRLEEEGV 44
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
2-91 1.25e-03

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 37.22  E-value: 1.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2185697600   2 LLLLKDGPVT--------ASYLGERLGLSAAGIRRHLDILVEEGLTEVVhrrpsarpGQTAGRGRPAKHFRLTDQGRAQF 73
Cdd:COG1695    15 LALLAEGPMYgyeiikelEERSGGFWKVSEGTLYPALKRLEKEGLVESE--------WEESEGGPRRKYYRLTEAGREEL 86

                          90
                  ....*....|....*...
gi 2185697600  74 ghaydQLAAEALTALREA 91
Cdd:COG1695    87 -----AEWLEEWEKLAEA 99
GbsR COG1510
DNA-binding transcriptional regulator GbsR, MarR family [Transcription];
2-134 1.36e-03

DNA-binding transcriptional regulator GbsR, MarR family [Transcription];


Pssm-ID: 441119  Cd Length: 164  Bit Score: 37.99  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2185697600   2 LLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLTEVVHrrpsaRPGQtagRgrpAKHFRLTDQGRAQFGHAYDQLA 81
Cdd:COG1510    35 LLYLSDEPLTADELAEELGVSKSSVSTALRELEDWGLVRRVR-----KPGD---R---KDYFRAEKDVWELFRRVFRERL 103

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2185697600  82 AEALTALREAggpeavrhfakarferlVEDVTPLVEDEESVPEVARRLAEVLD 134
Cdd:COG1510   104 RREIDPTLEL-----------------LREALEELEDSEEAEEARERLEELRD 139
COG3398 COG3398
Predicted transcriptional regulator, contains two HTH domains [Transcription];
2-40 1.46e-03

Predicted transcriptional regulator, contains two HTH domains [Transcription];


Pssm-ID: 442625 [Multi-domain]  Cd Length: 159  Bit Score: 37.94  E-value: 1.46e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2185697600   2 LLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLTE 40
Cdd:COG3398   104 LYLLENPGATNKELAEELGISRSTVSWHLKRLEEDGLVE 142
dimerization2 pfam16864
dimerization domain; This domain, found in methyltransferases, functions as a dimerization ...
 4-48 4.46e-03

dimerization domain; This domain, found in methyltransferases, functions as a dimerization domain.


Pssm-ID: 465287  Cd Length: 87  Bit Score: 35.23  E-value: 4.46e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2185697600   4 LLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLTEVVHRRPSA 48
Cdd:pfam16864  25 LLAEGPLSAEEVAARLGASVDGTERLLDACVALGLLEREKTDGKG 69
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 1-73 5.90e-03

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


Pssm-ID: 397561  Cd Length: 74  Bit Score: 34.53  E-value: 5.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2185697600   1 MLLLLKDGPVTASYLGERLGLSAAGIRR--------HLDILVEEGLteVVHRRpsarpgQTAGRGRPAKHFRLTDQGRAQ 72
Cdd:pfam03551   1 VLAVLGEQPRYGYEIIKELEELSGGFWRpsegtlypILKRLEKEGL--VESEW------VDSGGGPPRKYYRLTDAGRRE 72


                  .
gi 2185697600  73 F 73
Cdd:pfam03551  73 L 73
HTH_metalloreg NF033788
metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense ...
 1-49 6.53e-03

metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense toxic heavy metals such as arsenic or cadmium, and are released from DNA so that resistance factors will be expressed, include ArsR, SmtB, ZiaR, CadC, CadX, KmtR, etc. However, some members of this family, including the sporulation delaying system autorepressor SdpR and its family (see NF033789), may lack metal-binding cites and instead regulate other cellular processes.


Pssm-ID: 411368 [Multi-domain]  Cd Length: 76  Bit Score: 34.36  E-value: 6.53e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2185697600   1 MLLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLtevVHRRPSAR 49
Cdd:NF033788   16 ILELLAEGELCVCELAEALGLSQSAVSQHLKVLRDAGL---VTSRREGR 61
MarR_2 pfam12802
MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a ...
 1-51 7.37e-03

MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.


Pssm-ID: 432797 [Multi-domain]  Cd Length: 60  Bit Score: 33.72  E-value: 7.37e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2185697600   1 MLLLLKDGPVTASYLGERLGLSAAGIRRHLDILVEEGLtevVHRRPSARPG 51
Cdd:pfam12802  11 LLALARNPGLTVAELARRLGISKQTVSRLVKRLEAKGL---VEREPSPADR 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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