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Conserved domains on  [gi|2189629531|ref|WP_237507562|]
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DUF1508 domain-containing protein, partial [Pseudomonas carnis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FRG smart00901
This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;
139-217 8.77e-26

This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;


:

Pssm-ID: 214898  Cd Length: 103  Bit Score: 100.09  E-value: 8.77e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2189629531  139 FYRGHGDVAYKLVPSLYRNPG------WIRNEHIIFQELVLRCSNDF-KLSGPTFNALVKMQHYALPTRLLDITTNPLIA 211
Cdd:smart00901   6 LFRGQSDAYWPLVPSLFRKKGfypdllSSDDERRLLRNFKRQAPNRLdKSPSDDLEWLALAQHYGLPTRLLDWTTNPLVA 85


                   ....*.
gi 2189629531  212 LYFACA 217
Cdd:smart00901  86 LYFAVE 91
YegP COG3422
Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];
52-106 1.72e-07

Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];


:

Pssm-ID: 442648  Cd Length: 58  Bit Score: 47.49  E-value: 1.72e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2189629531  52 RFRKIESRDGKLYFQLIGDNGGLLGSSALYSSMKSLERGIAAAIKYGAtDATIHD 106
Cdd:COG3422     3 KFELYRDKDGEFRFRLKAANGQIIASSEGYASKAAAENGIESVKKNAP-DAEVVD 56
YegP COG3422
Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];
1-47 5.07e-07

Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];


:

Pssm-ID: 442648  Cd Length: 58  Bit Score: 46.34  E-value: 5.07e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2189629531   1 KYHIVKSSNGNYYYVLRAPNAETILVSEQFESHSAVEAAIQQAMASA 47
Cdd:COG3422     3 KFELYRDKDGEFRFRLKAANGQIIASSEGYASKAAAENGIESVKKNA 49
 
Name Accession Description Interval E-value
FRG smart00901
This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;
139-217 8.77e-26

This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;


Pssm-ID: 214898  Cd Length: 103  Bit Score: 100.09  E-value: 8.77e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2189629531  139 FYRGHGDVAYKLVPSLYRNPG------WIRNEHIIFQELVLRCSNDF-KLSGPTFNALVKMQHYALPTRLLDITTNPLIA 211
Cdd:smart00901   6 LFRGQSDAYWPLVPSLFRKKGfypdllSSDDERRLLRNFKRQAPNRLdKSPSDDLEWLALAQHYGLPTRLLDWTTNPLVA 85


                   ....*.
gi 2189629531  212 LYFACA 217
Cdd:smart00901  86 LYFAVE 91
FRG pfam08867
FRG domain; This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is ...
 138-223 1.01e-19

FRG domain; This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterized.


Pssm-ID: 430274  Cd Length: 93  Bit Score: 83.07  E-value: 1.01e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2189629531 138 IFYRGHGDVAYKLVPSLYRNPG---WIRNE-HII--FQELVLRCSNDfkLSGPTFNALVKMQHYALPTRLLDITTNPLIA 211
Cdd:pfam08867   3 YVYRGQRDADWRLIPSLYRLGGkkpSLKLEkRLLreFKKYARPRLEE--EPENDWDWLALAQHYGLPTRLLDWTYSPLVA 80

                          90
                  ....*....|..
gi 2189629531 212 LYFACAGGGSAD 223
Cdd:pfam08867  81 LYFATEDPRKFD 92
YegP COG3422
Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];
52-106 1.72e-07

Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];


Pssm-ID: 442648  Cd Length: 58  Bit Score: 47.49  E-value: 1.72e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2189629531  52 RFRKIESRDGKLYFQLIGDNGGLLGSSALYSSMKSLERGIAAAIKYGAtDATIHD 106
Cdd:COG3422     3 KFELYRDKDGEFRFRLKAANGQIIASSEGYASKAAAENGIESVKKNAP-DAEVVD 56
YegP COG3422
Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];
1-47 5.07e-07

Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];


Pssm-ID: 442648  Cd Length: 58  Bit Score: 46.34  E-value: 5.07e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2189629531   1 KYHIVKSSNGNYYYVLRAPNAETILVSEQFESHSAVEAAIQQAMASA 47
Cdd:COG3422     3 KFELYRDKDGEFRFRLKAANGQIIASSEGYASKAAAENGIESVKKNA 49
DUF1508 pfam07411
Domain of unknown function (DUF1508); This family represents a series of bacterial domains of ...
 8-53 3.67e-06

Domain of unknown function (DUF1508); This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as being hypothetical.


Pssm-ID: 429450  Cd Length: 47  Bit Score: 43.62  E-value: 3.67e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2189629531   8 SNGNYYYVLRAPNAETILVSEQFESHSAVEAAIQQAMASANNPERF 53
Cdd:pfam07411   1 KNGKFRFRLKAANGEVIATSEGYSSKAAAENGIESVKKNAPDAEVV 46
DUF1508 pfam07411
Domain of unknown function (DUF1508); This family represents a series of bacterial domains of ...
 59-106 6.81e-06

Domain of unknown function (DUF1508); This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as being hypothetical.


Pssm-ID: 429450  Cd Length: 47  Bit Score: 42.85  E-value: 6.81e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2189629531  59 RDGKLYFQLIGDNGGLLGSSALYSSMKSLERGIAAAIKYgATDATIHD 106
Cdd:pfam07411   1 KNGKFRFRLKAANGEVIATSEGYSSKAAAENGIESVKKN-APDAEVVD 47
 
Name Accession Description Interval E-value
FRG smart00901
This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;
139-217 8.77e-26

This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised;


Pssm-ID: 214898  Cd Length: 103  Bit Score: 100.09  E-value: 8.77e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2189629531  139 FYRGHGDVAYKLVPSLYRNPG------WIRNEHIIFQELVLRCSNDF-KLSGPTFNALVKMQHYALPTRLLDITTNPLIA 211
Cdd:smart00901   6 LFRGQSDAYWPLVPSLFRKKGfypdllSSDDERRLLRNFKRQAPNRLdKSPSDDLEWLALAQHYGLPTRLLDWTTNPLVA 85


                   ....*.
gi 2189629531  212 LYFACA 217
Cdd:smart00901  86 LYFAVE 91
FRG pfam08867
FRG domain; This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is ...
 138-223 1.01e-19

FRG domain; This presumed domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterized.


Pssm-ID: 430274  Cd Length: 93  Bit Score: 83.07  E-value: 1.01e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2189629531 138 IFYRGHGDVAYKLVPSLYRNPG---WIRNE-HII--FQELVLRCSNDfkLSGPTFNALVKMQHYALPTRLLDITTNPLIA 211
Cdd:pfam08867   3 YVYRGQRDADWRLIPSLYRLGGkkpSLKLEkRLLreFKKYARPRLEE--EPENDWDWLALAQHYGLPTRLLDWTYSPLVA 80

                          90
                  ....*....|..
gi 2189629531 212 LYFACAGGGSAD 223
Cdd:pfam08867  81 LYFATEDPRKFD 92
YegP COG3422
Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];
52-106 1.72e-07

Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];


Pssm-ID: 442648  Cd Length: 58  Bit Score: 47.49  E-value: 1.72e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2189629531  52 RFRKIESRDGKLYFQLIGDNGGLLGSSALYSSMKSLERGIAAAIKYGAtDATIHD 106
Cdd:COG3422     3 KFELYRDKDGEFRFRLKAANGQIIASSEGYASKAAAENGIESVKKNAP-DAEVVD 56
YegP COG3422
Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];
1-47 5.07e-07

Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];


Pssm-ID: 442648  Cd Length: 58  Bit Score: 46.34  E-value: 5.07e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2189629531   1 KYHIVKSSNGNYYYVLRAPNAETILVSEQFESHSAVEAAIQQAMASA 47
Cdd:COG3422     3 KFELYRDKDGEFRFRLKAANGQIIASSEGYASKAAAENGIESVKKNA 49
DUF1508 pfam07411
Domain of unknown function (DUF1508); This family represents a series of bacterial domains of ...
 8-53 3.67e-06

Domain of unknown function (DUF1508); This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as being hypothetical.


Pssm-ID: 429450  Cd Length: 47  Bit Score: 43.62  E-value: 3.67e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2189629531   8 SNGNYYYVLRAPNAETILVSEQFESHSAVEAAIQQAMASANNPERF 53
Cdd:pfam07411   1 KNGKFRFRLKAANGEVIATSEGYSSKAAAENGIESVKKNAPDAEVV 46
DUF1508 pfam07411
Domain of unknown function (DUF1508); This family represents a series of bacterial domains of ...
 59-106 6.81e-06

Domain of unknown function (DUF1508); This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as being hypothetical.


Pssm-ID: 429450  Cd Length: 47  Bit Score: 42.85  E-value: 6.81e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2189629531  59 RDGKLYFQLIGDNGGLLGSSALYSSMKSLERGIAAAIKYgATDATIHD 106
Cdd:pfam07411   1 KNGKFRFRLKAANGEVIATSEGYSSKAAAENGIESVKKN-APDAEVVD 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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