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Conserved domains on  [gi|2190500981|ref|WP_237702048|]
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transposase [Salinibacter ruber]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS5_3 super family cl41332
IS5 family transposase;
1-31 9.67e-09

IS5 family transposase;


The actual alignment was detected with superfamily member NF033580:

Pssm-ID: 468097 [Multi-domain]  Cd Length: 257  Bit Score: 47.18  E-value: 9.67e-09
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2190500981   1 MKTGTQWRMLPGEFAPWWAAHYYFRRWREEG 31
Cdd:NF033580   42 LRTGCPWRDLPERFGPWSTVYRRFRRWSEAG 72
 
Name Accession Description Interval E-value
transpos_IS5_3 NF033580
IS5 family transposase;
1-31 9.67e-09

IS5 family transposase;


Pssm-ID: 468097 [Multi-domain]  Cd Length: 257  Bit Score: 47.18  E-value: 9.67e-09
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2190500981   1 MKTGTQWRMLPGEFAPWWAAHYYFRRWREEG 31
Cdd:NF033580   42 LRTGCPWRDLPERFGPWSTVYRRFRRWSEAG 72
COG3293 COG3293
Transposase [Mobilome: prophages, transposons];
1-31 2.53e-08

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442522 [Multi-domain]  Cd Length: 98  Bit Score: 44.19  E-value: 2.53e-08
                         10        20        30
                 ....*....|....*....|....*....|.
gi 2190500981  1 MKTGTQWRMLPGEFAPWWAAHYYFRRWREEG 31
Cdd:COG3293   45 LRTGCPWRDLPRDFGPWRTVERRFRRWRRLG 75
DUF4096 pfam13340
Putative transposase of IS4/5 family (DUF4096);
1-31 6.40e-08

Putative transposase of IS4/5 family (DUF4096);


Pssm-ID: 433130  Cd Length: 76  Bit Score: 42.86  E-value: 6.40e-08
                         10        20        30
                 ....*....|....*....|....*....|.
gi 2190500981  1 MKTGTQWRMLPGEFAPWWAAHYYFRRWREEG 31
Cdd:pfam13340 40 LRTGCPWRDLPEDFGPWSTVYRRFRRWSRAG 70
 
Name Accession Description Interval E-value
transpos_IS5_3 NF033580
IS5 family transposase;
1-31 9.67e-09

IS5 family transposase;


Pssm-ID: 468097 [Multi-domain]  Cd Length: 257  Bit Score: 47.18  E-value: 9.67e-09
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2190500981   1 MKTGTQWRMLPGEFAPWWAAHYYFRRWREEG 31
Cdd:NF033580   42 LRTGCPWRDLPERFGPWSTVYRRFRRWSEAG 72
COG3293 COG3293
Transposase [Mobilome: prophages, transposons];
1-31 2.53e-08

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442522 [Multi-domain]  Cd Length: 98  Bit Score: 44.19  E-value: 2.53e-08
                         10        20        30
                 ....*....|....*....|....*....|.
gi 2190500981  1 MKTGTQWRMLPGEFAPWWAAHYYFRRWREEG 31
Cdd:COG3293   45 LRTGCPWRDLPRDFGPWRTVERRFRRWRRLG 75
DUF4096 pfam13340
Putative transposase of IS4/5 family (DUF4096);
1-31 6.40e-08

Putative transposase of IS4/5 family (DUF4096);


Pssm-ID: 433130  Cd Length: 76  Bit Score: 42.86  E-value: 6.40e-08
                         10        20        30
                 ....*....|....*....|....*....|.
gi 2190500981  1 MKTGTQWRMLPGEFAPWWAAHYYFRRWREEG 31
Cdd:pfam13340 40 LRTGCPWRDLPEDFGPWSTVYRRFRRWSRAG 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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