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Conserved domains on  [gi|2193138381|ref|WP_238322396|]
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DUF4212 domain-containing protein [Kordiimonas gwangyangensis]

Protein Classification

DUF4212 domain-containing protein( domain architecture ID 10022733)

DUF4212 domain-containing protein similar to Shewanella oneidensis solute:sodium symporter small subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Na_symport_sm TIGR03647
putative solute:sodium symporter small subunit; Members of this family are highly hydrophobic ...
 20-95 2.30e-33

putative solute:sodium symporter small subunit; Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments. [Transport and binding proteins, Unknown substrate]


:

Pssm-ID: 132686  Cd Length: 77  Bit Score: 109.98  E-value: 2.30e-33
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2193138381 20 YWRANLHLLGKLLVVWFVVSFVAGILLEDWLNGFTVLGFKLGFWFAQQGSIFTFVVLIFVYASRMKKLDRAFGVED 95
Cdd:TIGR03647  2 YWRANLRLIAVLLAIWFVVSFGAGILFADELNSFTFFGFPLGFWFAQQGSIYVFVVLIFVYAWRMNRLDRKYGVDE 77
 
Name Accession Description Interval E-value
Na_symport_sm TIGR03647
putative solute:sodium symporter small subunit; Members of this family are highly hydrophobic ...
 20-95 2.30e-33

putative solute:sodium symporter small subunit; Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 132686  Cd Length: 77  Bit Score: 109.98  E-value: 2.30e-33
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2193138381 20 YWRANLHLLGKLLVVWFVVSFVAGILLEDWLNGFTVLGFKLGFWFAQQGSIFTFVVLIFVYASRMKKLDRAFGVED 95
Cdd:TIGR03647  2 YWRANLRLIAVLLAIWFVVSFGAGILFADELNSFTFFGFPLGFWFAQQGSIYVFVVLIFVYAWRMNRLDRKYGVDE 77
COG4327 COG4327
Uncharacterized membrane protein, DUF4212 domain [Function unknown];
15-95 3.56e-32

Uncharacterized membrane protein, DUF4212 domain [Function unknown];


Pssm-ID: 443468  Cd Length: 87  Bit Score: 107.23  E-value: 3.56e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2193138381 15 ARMRSYWRANLHLLGKLLVVWFVVSFVAGILLeDWLNGFTVLGFKLGFWFAQQGSIFTFVVLIFVYASRMKKLDRAFGVE 94
Cdd:COG4327    8 EPATAYWRRNLRLIAILLVIWFLVSFGFGLFA-RELNQIRFGGFPLGFWFAAQGSILVFVVLIFVYAWRMNRLDRKYGVD 86


                 .
gi 2193138381 95 D 95
Cdd:COG4327   87 E 87
DUF4212 pfam13937
Domain of unknown function (DUF4212); This family includes several putative integral membrane ...
 17-92 3.56e-31

Domain of unknown function (DUF4212); This family includes several putative integral membrane proteins which have been predicted as the putative subunit of transporters for D-alanine or lactate.


Pssm-ID: 433592  Cd Length: 77  Bit Score: 104.49  E-value: 3.56e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2193138381 17 MRSYWRANLHLLGKLLVVWFVVSFVAGILLEDWLNGF-TVLGFKLGFWFAQQGSIFTFVVLIFVYASRMKKLDRAFG 92
Cdd:pfam13937  1 ARAYWRANLRLILILLAIWFVVSFGFGILFAPELNTIrTFGGFPLGFWFAAQGSILVFVVLIFVYAWRMNRLDRKYG 77
 
Name Accession Description Interval E-value
Na_symport_sm TIGR03647
putative solute:sodium symporter small subunit; Members of this family are highly hydrophobic ...
 20-95 2.30e-33

putative solute:sodium symporter small subunit; Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 132686  Cd Length: 77  Bit Score: 109.98  E-value: 2.30e-33
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2193138381 20 YWRANLHLLGKLLVVWFVVSFVAGILLEDWLNGFTVLGFKLGFWFAQQGSIFTFVVLIFVYASRMKKLDRAFGVED 95
Cdd:TIGR03647  2 YWRANLRLIAVLLAIWFVVSFGAGILFADELNSFTFFGFPLGFWFAQQGSIYVFVVLIFVYAWRMNRLDRKYGVDE 77
COG4327 COG4327
Uncharacterized membrane protein, DUF4212 domain [Function unknown];
15-95 3.56e-32

Uncharacterized membrane protein, DUF4212 domain [Function unknown];


Pssm-ID: 443468  Cd Length: 87  Bit Score: 107.23  E-value: 3.56e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2193138381 15 ARMRSYWRANLHLLGKLLVVWFVVSFVAGILLeDWLNGFTVLGFKLGFWFAQQGSIFTFVVLIFVYASRMKKLDRAFGVE 94
Cdd:COG4327    8 EPATAYWRRNLRLIAILLVIWFLVSFGFGLFA-RELNQIRFGGFPLGFWFAAQGSILVFVVLIFVYAWRMNRLDRKYGVD 86


                 .
gi 2193138381 95 D 95
Cdd:COG4327   87 E 87
DUF4212 pfam13937
Domain of unknown function (DUF4212); This family includes several putative integral membrane ...
 17-92 3.56e-31

Domain of unknown function (DUF4212); This family includes several putative integral membrane proteins which have been predicted as the putative subunit of transporters for D-alanine or lactate.


Pssm-ID: 433592  Cd Length: 77  Bit Score: 104.49  E-value: 3.56e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2193138381 17 MRSYWRANLHLLGKLLVVWFVVSFVAGILLEDWLNGF-TVLGFKLGFWFAQQGSIFTFVVLIFVYASRMKKLDRAFG 92
Cdd:pfam13937  1 ARAYWRANLRLILILLAIWFVVSFGFGILFAPELNTIrTFGGFPLGFWFAAQGSILVFVVLIFVYAWRMNRLDRKYG 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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