|
Name |
Accession |
Description |
Interval |
E-value |
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
95-767 |
4.48e-41 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
:
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 160.38 E-value: 4.48e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 95 LKEVVVkTNTKTEVTSIE-----KSLKKEVISNFTDKSLGDALNTLSGVSSLNTGNSIVKPMIHGL--HSSRLLIINNSV 167
Cdd:COG1629 1 LEEVVV-TATRTDESLQDvpgsvSVISREQLEDQPATDLGDLLRRVPGVSVTSAGGGAGQISIRGFggGGNRVLVLVDGV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 168 RMFDQEWGDEHAPNIDISSSDRIDVIKGANSLRYGSDAVGGLILIRPKKyaIKDSLFGSTTTSINSNGFGGNVTSEIIKT 247
Cdd:COG1629 80 PLNDPSGGDGGLSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKK--PKDGKGGEVSASYGSYGTYRASLSLSGGN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 248 FNSGYYtkLQANYKRFGDfkapdyYLTNTGLENINASFRTGFNSYEKG-FDAYYSFVNNKigilrsshiGNVNDLVEAIN 326
Cdd:COG1629 158 GKLAYR--LSASYRDSDG------YRDNSDSDRYNLRAKLGYQLGDDTrLTLSASYSDSD---------QDSPGYLTLAA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 327 NREPRIVEDFSYDINFPRQNIFHHLAKVEA-FKRFKNLGKLSLQLDAQLNRRKEFDLRRGDLRDRPVI-----DLQLFTA 400
Cdd:COG1629 221 LRPRGAMDDGTNPYSNDTDDNTRDRYSLSLeYEHLGDGLKLSASAYYRYDDTDLDSDFTPTPADGGTLeqtdfDNRTYGL 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 401 SIQPNLEINKFDNLKINTGFLVRYQNNDA----------IVNTGANTLIPDYNKYEVGTYAILDVDINETSEFSAGIRYD 470
Cdd:COG1629 301 ELRLTYDLGFGGKHTLLVGLDYQRQDLDGsgypldlgsgSLPTLTSGADDDGTTTSLALYAQDTYKLTDKLTLTAGLRYD 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 471 YSRikarkwyvesdwtalnYDVLFPEFDTGIVDGlelltrpEFTFNNFSTNLGYSKRFGKDYSFLFNYGLAQRMPNPSEL 550
Cdd:COG1629 381 YVS----------------YDVDDTVTGTDSASG-------SRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGEL 437
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 551 FSGGlhhsAARIEIGFLTINKETANKFILSLEKN--NENFGFSISPYYKQIDGFIQLIPTGIRTTIRGAFpvweYNQVDA 628
Cdd:COG1629 438 YANG----TDPYSVGNPDLKPETSTNYELGLRYRllDGRLSLSLALFYSDVDNEILSVPLPNDSGFSTYY----TNAGKA 509
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 629 RIFGVDIDINKKLASHFDYKGSLSLLQG--------DDLTNDNPLIHMPSANFSNSIMYSnndfHQLKIGVNQKTVLQQN 700
Cdd:COG1629 510 RSYGVELELSYQLTPGLSLNASYSYTDAkfdddtdgSADLDGNRLPGVPPLTANLGLTYE----FPGGWSLGLGVRYVGD 585
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2194657991 701 RFPDYnfttldpvtqqqvfVDISSTPPSYTLFGFSssaVFYPFKKGsMEVGFNVDNLFNVSYRENLN 767
Cdd:COG1629 586 RYLDD--------------ANTQGAPGGYTLVDLG---AGYRFGDN-LTLSLGVDNLFDKKYATSLS 634
|
|
| Peptidase_M14NE-CP-C_like super family |
cl21470 |
Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, ... |
15-100 |
1.26e-11 |
|
Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain; This domain is found C-terminal to the M14 carboxypeptidase (CP) N/E subfamily containing zinc-binding enzymes that hydrolyze single C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes enzymatically active members (carboxypeptidase N, E, M, D, and Z), as well as non-active members (carboxypeptidase-like protein 1, -2, aortic CP-like protein, and adipocyte enhancer binding protein-1) which lack the critical active site and substrate-binding residues considered necessary for activity. The active N/E enzymes fulfill a variety of cellular functions, including prohormone processing, regulation of peptide hormone activity, alteration of protein-protein or protein-cell interactions and transcriptional regulation. For M14 CPs, it has been suggested that this domain may assist in folding of the CP domain, regulate enzyme activity, or be involved in interactions with other proteins or with membranes; for carboxypeptidase M, it may interact with the bradykinin 1 receptor at the cell surface. This domain may also be found in other peptidase families.
The actual alignment was detected with superfamily member pfam13715:
Pssm-ID: 473874 [Multi-domain] Cd Length: 88 Bit Score: 61.07 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 15 FSGKITDFHDNSLIVGASIQIINLNKFTTSNLEGEFVFNNLCEGKLTLEIKHVACETKRLVINLTKNTFKEISLEHHLE- 93
Cdd:pfam13715 1 ISGTVVDENTGEPLPGATVYVKGTTKGTVTDADGNFELKNLPAGTYTLVVSFVGYKTQEKKVTVSNDNTLDVNFLLKEDa 80
|
....*...
gi 2194657991 94 -ELKEVVV 100
Cdd:pfam13715 81 lLLDEVVV 88
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
95-767 |
4.48e-41 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 160.38 E-value: 4.48e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 95 LKEVVVkTNTKTEVTSIE-----KSLKKEVISNFTDKSLGDALNTLSGVSSLNTGNSIVKPMIHGL--HSSRLLIINNSV 167
Cdd:COG1629 1 LEEVVV-TATRTDESLQDvpgsvSVISREQLEDQPATDLGDLLRRVPGVSVTSAGGGAGQISIRGFggGGNRVLVLVDGV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 168 RMFDQEWGDEHAPNIDISSSDRIDVIKGANSLRYGSDAVGGLILIRPKKyaIKDSLFGSTTTSINSNGFGGNVTSEIIKT 247
Cdd:COG1629 80 PLNDPSGGDGGLSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKK--PKDGKGGEVSASYGSYGTYRASLSLSGGN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 248 FNSGYYtkLQANYKRFGDfkapdyYLTNTGLENINASFRTGFNSYEKG-FDAYYSFVNNKigilrsshiGNVNDLVEAIN 326
Cdd:COG1629 158 GKLAYR--LSASYRDSDG------YRDNSDSDRYNLRAKLGYQLGDDTrLTLSASYSDSD---------QDSPGYLTLAA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 327 NREPRIVEDFSYDINFPRQNIFHHLAKVEA-FKRFKNLGKLSLQLDAQLNRRKEFDLRRGDLRDRPVI-----DLQLFTA 400
Cdd:COG1629 221 LRPRGAMDDGTNPYSNDTDDNTRDRYSLSLeYEHLGDGLKLSASAYYRYDDTDLDSDFTPTPADGGTLeqtdfDNRTYGL 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 401 SIQPNLEINKFDNLKINTGFLVRYQNNDA----------IVNTGANTLIPDYNKYEVGTYAILDVDINETSEFSAGIRYD 470
Cdd:COG1629 301 ELRLTYDLGFGGKHTLLVGLDYQRQDLDGsgypldlgsgSLPTLTSGADDDGTTTSLALYAQDTYKLTDKLTLTAGLRYD 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 471 YSRikarkwyvesdwtalnYDVLFPEFDTGIVDGlelltrpEFTFNNFSTNLGYSKRFGKDYSFLFNYGLAQRMPNPSEL 550
Cdd:COG1629 381 YVS----------------YDVDDTVTGTDSASG-------SRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGEL 437
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 551 FSGGlhhsAARIEIGFLTINKETANKFILSLEKN--NENFGFSISPYYKQIDGFIQLIPTGIRTTIRGAFpvweYNQVDA 628
Cdd:COG1629 438 YANG----TDPYSVGNPDLKPETSTNYELGLRYRllDGRLSLSLALFYSDVDNEILSVPLPNDSGFSTYY----TNAGKA 509
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 629 RIFGVDIDINKKLASHFDYKGSLSLLQG--------DDLTNDNPLIHMPSANFSNSIMYSnndfHQLKIGVNQKTVLQQN 700
Cdd:COG1629 510 RSYGVELELSYQLTPGLSLNASYSYTDAkfdddtdgSADLDGNRLPGVPPLTANLGLTYE----FPGGWSLGLGVRYVGD 585
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2194657991 701 RFPDYnfttldpvtqqqvfVDISSTPPSYTLFGFSssaVFYPFKKGsMEVGFNVDNLFNVSYRENLN 767
Cdd:COG1629 586 RYLDD--------------ANTQGAPGGYTLVDLG---AGYRFGDN-LTLSLGVDNLFDKKYATSLS 634
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
114-787 |
4.66e-30 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 126.41 E-value: 4.66e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 114 SLKKEVISNFTDKSLGDALNTLSGVS----SLNTGNSIVkpmIHGLHSSRLLI--------INNSVRMFDQEWgdehapn 181
Cdd:cd01347 4 VITAEDIEKQPATSLADLLRRIPGVSvtrgGGGGGSTIS---IRGFGPDRTLVlvdglplaSSNYGRGVDLNT------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 182 IDISSSDRIDVIKGANSLRYGSDAVGGLILIRPKKyaIKDSLFGSTTTSINSNGFGGNVTSEI-----IKTFNSGYYTkL 256
Cdd:cd01347 74 IPPELIERVEVLKGPSSALYGSGAIGGVVNIITKR--PTDEFGGSVTAGYGSDNSGSSGGGGFdvsgaLADDGAFGAR-L 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 257 QANYKRFGDFKAPDYYLTNTGLENINASFRTGFNSYEK---GFDAYYSFVNNK-------IGILRSSHIGNVNDLVEAIN 326
Cdd:cd01347 151 YGAYRDGDGTIDGDGQADDSDEERYNVAGKLDWRPDDDtrlTLDAGYQDQDADgpggtlpANGTGSSLGGGPSSNTNGDR 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 327 NREPRIVEDFSYDINFPRQNIFHHlakveafkrfknlGKLSLQLDAQLNRRKEFDLRRGDLRDRPVIDLQLFTASIQPNL 406
Cdd:cd01347 231 DWDYRDRYRKRASLGLEHDLNDTG-------------WTLRANLSYSYTDNDGDPLILNGGNNAAGGDLGRSGYSSERDT 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 407 EINKFD---NLKINTGFLvryqnnDAIVNTGANTLIPDYNKYEVGTYAILDVDINETSEFSAGIRYDYSRIKARKWYVES 483
Cdd:cd01347 298 TQLGFDaglNAPFGTGPV------AHTLTLGVEYRREELDEKQTALYAQDTIELTDDLTLTLGLRYDHYDQDSKDTIAGG 371
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 484 DWTALNYDVLfpefdtgivdglelltrpeftfnNFSTNLGYskRFGKDYSFLFNYGLAQRMPNPSELFSGGLHHSAAriE 563
Cdd:cd01347 372 TTAKKSYSHW-----------------------SPSLGLVY--KLTDGLSLYASYSQGFRAPSLGELYGGGSHGGTA--A 424
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 564 IGFLTINKETANKFILSLE-KNNENFGFSISPYYKQIDGFIQLIPTGIRTTIRGAFpvweYNQVDARIFGVDIDINKKLA 642
Cdd:cd01347 425 VGNPNLKPEKSKQYELGLKyDPGDGLTLSAALFRIDIKNEIVSTPTNTGLGLVTVY----VNGGKARIRGVELEASYDLT 500
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 643 SHFDYKGSLSLLQG-----DDLTNDNPLIHMPSANFSNSIMYsnnDFHQLKIGVNqktvlqqnrfpdYNFTTLDPVTQQQ 717
Cdd:cd01347 501 DGLGLTGSYTYTDTevkrtDGATTGNRLPGIPKHTANLGLDY---ELPDEGLTAG------------GGVRYRGKQYADT 565
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2194657991 718 VFVDISSTPPSYTLFGFSssaVFYPFKKGSMeVGFNVDNLFNVSYRENLNRLR---YFADDLGRNLNLKIKIN 787
Cdd:cd01347 566 ANGNNTVKVPGYTLVDLS---ASYQFTKNLT-LRLGVNNLFDKDYYTSLSVRGsglYGYYGPGRTYYLSVSYK 634
|
|
| TonB-hemin |
TIGR01785 |
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ... |
95-788 |
2.59e-26 |
|
TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273807 [Multi-domain] Cd Length: 665 Bit Score: 114.80 E-value: 2.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 95 LKEVVVkTNTKTEVTSIEKSLKKEVISNFTDKSLG-----DALNTLSGVSSLNTGNSI-VKPMIHGLHSSRLLIINNSVR 168
Cdd:TIGR01785 1 LDTVTV-TATRTRQVLSEAPASVSVISGEQIESKQannlaDALNTVPGVDVTGGGRPPgQSINIRGLQDNRVLVVVDGAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 169 M-FDQEWGDEHAPNIDISSSDRIDVIKGANSLRYGSDAVGGLILIRPKKyaIKDSL-----FG---STTTSINSNGFGGN 239
Cdd:TIGR01785 80 QnYQRGGAHNGSLFVDPELLKRIEIVKGPSSSLYGSGALGGVVAFRTKD--AADLLrpgqlFGglaKLSYGSNNNSFGGS 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 240 V-----TSEIIKTFNSGYYTKlQANYKRFGDFKA-PDYYLTNTGL----ENINASFRTGFNSyekgFDAYYSFvnnkigI 309
Cdd:TIGR01785 158 VavagrLDDNLDALVAATYRD-GGNYRNGNKEEAtNSAYVQKNLLaklgWQLDDAQRLEFSY----FTTEGSL------D 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 310 LRSSHIGNVNDLVEAINNREPRIVEDFSYDINFprqnifhhlakveafkRFKNLGKLSLQLDAQL--NRRKEFDLR--RG 385
Cdd:TIGR01785 227 EAQNSGPGTEYVLGSSSTLLASSTRDRSATLTY----------------NWTPEDNPWLDATASLyyNRTENDNDRsaRG 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 386 DLRDRPvIDLQLFTASIQPNLEINKFDNLKINTG-----FLVRYQNNDAIVNTGANTLIPDYNKYEVGTYAILDVDI-NE 459
Cdd:TIGR01785 291 VGREEG-YQYTTYGATLQNTSRFDVASWSTLTYGvdwmkDKRRTESFDPNSVTTIVPNPPSAKEYFFGLFLQDNIPLlDD 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 460 TSEFSAGIRYDYsrikarkwyvesdwtalnydvlfPEFDTGIVDGLELltrPEFTFNNFSTNLGYSKRFGKDYSFLFNYG 539
Cdd:TIGR01785 370 RLTLSAGLRYDH-----------------------YKLSPKTTADTEA---VDRSYSRWSPSLGLSYKPVDWLTLYASYS 423
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 540 LAQRMPNPSELFSGGLHH--SAARIEIGFLTINKETANKFIL-------SLEKNNENFGFSISPYYKQIDGFIQLIPTGI 610
Cdd:TIGR01785 424 QGFRAPSIDELYGTGDHPgtPGGYTFAPNPNLKPETSKTWELganlsfdNLLLDNDQLQFKVAYFYNDVKDFIDLTIGVT 503
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 611 RTTIRGAFPVWEY-NQVDARIFGVDIDINKKLAShFDYKGSLSLLQGDDLTNDNPLIHMPSanfsnsimysnndfhqlki 689
Cdd:TIGR01785 504 DNVTAGMNNITQYvNIDGARIRGIEASASYDAGL-WATGLSYGYTIGKDQNTNQWLSNIPP------------------- 563
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 690 gvnQKTVLQQN-RFPDYNFTT------LDPVTQQQVFVDISSTP----PSYTLFGFSSSavFYPFKKGSMEVGFNVDNLF 758
Cdd:TIGR01785 564 ---LKLVVTVGyRFPDRRLDLgakaayYERQSESPTTEDVAANGllttPGYTVVDLYAT--YQPNAVKGLTVRFGVNNLT 638
|
730 740 750
....*....|....*....|....*....|
gi 2194657991 759 NVSYRENLNRLRYFAddlGRNLNLKIKINY 788
Cdd:TIGR01785 639 DRKYTPAQSVPGAGP---GRNFKGSVKYQF 665
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
416-787 |
5.17e-17 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 84.82 E-value: 5.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 416 INTGFLVRYQNNDAIVNTGANTLIPDYNKYEVGT------YAILDVDINETSEFSAGIRYDYSRIKARKWYVESDWTALN 489
Cdd:pfam00593 138 ELRTAGLDYRRLDDDAYDPYDPANPSSSSYSDTTtdsyglYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGDNFSRS 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 490 YDVLFPefdtgivdglelltrpeftfnnfSTNLGYskRFGKDYSFLFNYGLAQRMPNPSELFSGGLHHSAARIEIGFLTI 569
Cdd:pfam00593 218 YSAFSP-----------------------RLGLVY--KPTDNLSLYASYSRGFRAPSLGELYGSGSGGGGGAVAGGNPDL 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 570 NKETANKFILSLEKNNENFGFSISPYYKQIDGFIQLIPTGIRTTIRGAFPvweYNQVDARIFGVDIDINKKLASHFDYKG 649
Cdd:pfam00593 273 KPETSDNYELGLKYDDGRLSLSLALFYIDIKNLITSDPDGPGLGGTVYTY---TNVGKARIRGVELELSGRLWGLGLSGG 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 650 SLSLLQGDD----LTNDNPLIHMPSANFSNSIMYSNNDFhQLKIGVNQKTVLQQNRFpDYNFTTLDPVtqqqvfvdisst 725
Cdd:pfam00593 350 GYTYTDADDdadaDDTGNPLPNVPRHTANLGLTYDFPLG-GWGARLGARYVGSGERR-YGDAANTFKT------------ 415
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2194657991 726 pPSYTLFGFSssaVFYPFKKGsMEVGFNVDNLFNVSYRENLNRLRYFADDL---GRNLNLKIKIN 787
Cdd:pfam00593 416 -PGYTLVDLS---AGYRLNKN-LTLRLGVNNLFDKYYKRYYSSGGGNLGGYpgpGRTFYLGLSYK 475
|
|
| CarbopepD_reg_2 |
pfam13715 |
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ... |
15-100 |
1.26e-11 |
|
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.
Pssm-ID: 433425 [Multi-domain] Cd Length: 88 Bit Score: 61.07 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 15 FSGKITDFHDNSLIVGASIQIINLNKFTTSNLEGEFVFNNLCEGKLTLEIKHVACETKRLVINLTKNTFKEISLEHHLE- 93
Cdd:pfam13715 1 ISGTVVDENTGEPLPGATVYVKGTTKGTVTDADGNFELKNLPAGTYTLVVSFVGYKTQEKKVTVSNDNTLDVNFLLKEDa 80
|
....*...
gi 2194657991 94 -ELKEVVV 100
Cdd:pfam13715 81 lLLDEVVV 88
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
100-254 |
9.39e-07 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 52.58 E-value: 9.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 100 VKTNTKTEVTSI----EKSLKKEVISNftdksLGDALNTLSGVSSLNTGNSIVKPMIHGLHSSRLLIINNSVRM------ 169
Cdd:PRK10064 40 VEQNLKDAPASIsvitQEDLQRKPVQN-----LKDVLKEVPGVQLTNEGDNRKGVSIRGLDSSYTLILIDGKRVnsrnav 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 170 -----FDQEWgdehapnIDISSSDRIDVIKGANSLRYGSDAVGGLILIRPKKyaIKDSLFGSTT--TSINSNGFGGNvts 242
Cdd:PRK10064 115 frhndFDLNW-------IPVDAIERIEVVRGPMSSLYGSDALGGVVNIITKK--IGQKWHGTVTvdTTIQEHRDRGD--- 182
|
170
....*....|..
gi 2194657991 243 eiikTFNSGYYT 254
Cdd:PRK10064 183 ----TYNGQFFT 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
95-767 |
4.48e-41 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 160.38 E-value: 4.48e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 95 LKEVVVkTNTKTEVTSIE-----KSLKKEVISNFTDKSLGDALNTLSGVSSLNTGNSIVKPMIHGL--HSSRLLIINNSV 167
Cdd:COG1629 1 LEEVVV-TATRTDESLQDvpgsvSVISREQLEDQPATDLGDLLRRVPGVSVTSAGGGAGQISIRGFggGGNRVLVLVDGV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 168 RMFDQEWGDEHAPNIDISSSDRIDVIKGANSLRYGSDAVGGLILIRPKKyaIKDSLFGSTTTSINSNGFGGNVTSEIIKT 247
Cdd:COG1629 80 PLNDPSGGDGGLSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKK--PKDGKGGEVSASYGSYGTYRASLSLSGGN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 248 FNSGYYtkLQANYKRFGDfkapdyYLTNTGLENINASFRTGFNSYEKG-FDAYYSFVNNKigilrsshiGNVNDLVEAIN 326
Cdd:COG1629 158 GKLAYR--LSASYRDSDG------YRDNSDSDRYNLRAKLGYQLGDDTrLTLSASYSDSD---------QDSPGYLTLAA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 327 NREPRIVEDFSYDINFPRQNIFHHLAKVEA-FKRFKNLGKLSLQLDAQLNRRKEFDLRRGDLRDRPVI-----DLQLFTA 400
Cdd:COG1629 221 LRPRGAMDDGTNPYSNDTDDNTRDRYSLSLeYEHLGDGLKLSASAYYRYDDTDLDSDFTPTPADGGTLeqtdfDNRTYGL 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 401 SIQPNLEINKFDNLKINTGFLVRYQNNDA----------IVNTGANTLIPDYNKYEVGTYAILDVDINETSEFSAGIRYD 470
Cdd:COG1629 301 ELRLTYDLGFGGKHTLLVGLDYQRQDLDGsgypldlgsgSLPTLTSGADDDGTTTSLALYAQDTYKLTDKLTLTAGLRYD 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 471 YSRikarkwyvesdwtalnYDVLFPEFDTGIVDGlelltrpEFTFNNFSTNLGYSKRFGKDYSFLFNYGLAQRMPNPSEL 550
Cdd:COG1629 381 YVS----------------YDVDDTVTGTDSASG-------SRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGEL 437
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 551 FSGGlhhsAARIEIGFLTINKETANKFILSLEKN--NENFGFSISPYYKQIDGFIQLIPTGIRTTIRGAFpvweYNQVDA 628
Cdd:COG1629 438 YANG----TDPYSVGNPDLKPETSTNYELGLRYRllDGRLSLSLALFYSDVDNEILSVPLPNDSGFSTYY----TNAGKA 509
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 629 RIFGVDIDINKKLASHFDYKGSLSLLQG--------DDLTNDNPLIHMPSANFSNSIMYSnndfHQLKIGVNQKTVLQQN 700
Cdd:COG1629 510 RSYGVELELSYQLTPGLSLNASYSYTDAkfdddtdgSADLDGNRLPGVPPLTANLGLTYE----FPGGWSLGLGVRYVGD 585
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2194657991 701 RFPDYnfttldpvtqqqvfVDISSTPPSYTLFGFSssaVFYPFKKGsMEVGFNVDNLFNVSYRENLN 767
Cdd:COG1629 586 RYLDD--------------ANTQGAPGGYTLVDLG---AGYRFGDN-LTLSLGVDNLFDKKYATSLS 634
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
74-714 |
2.01e-38 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 151.93 E-value: 2.01e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 74 LVINLTKNTFKEISLEHHLEELKEVVVkTNTKTEVTSIEKSLKKEVIS-----NFTDKSLGDALNTLSGVSSLNTGNS-- 146
Cdd:COG4771 6 LLLLLALAAQAADALAEDATELEEVVV-TATRTEQSLSDAPASVSVITaeeieKLGATDLADALRLLPGVSVTRSGGRgg 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 147 IVKPMIHGLHSSRLLIINNSVRMFDQEWGDEHAPN-IDISSSDRIDVIKGANSLRYGSDAVGGLILIRPKKYaiKDSLFG 225
Cdd:COG4771 85 SSGISIRGLGGDRVLVLIDGVPVNNPALGGGGDLSyIPPDDIERIEVIRGPASALYGSDAIGGVINIITKKP--TDELEG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 226 STTTSINSNGFGGNVTSEIIKTFNSGYYTKLQANYKRFGDFK--APDYYLTNTGLENINASFRTGFNSYEKG---FDAYY 300
Cdd:COG4771 163 SVSLGYGSNGNGTYSGSLSLGGPGDKLSFLLSGSYRDRDGYLdyRNGGFVGNSGYERYNLNAKLGYRLSDNHrlsLSGGY 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 301 SFVNNKIGILRSSHIGNVNDLVEAINNREPRIVEDFSYDINFPrqnifhhlakveafkrfknlGKLSLQLDAQLNRRKEF 380
Cdd:COG4771 243 SRQDRDGGPPTLGDTEISSDNAGDRDTTTDRGNYSLRYNGDLG--------------------DNLDLSLYYSRTDRDST 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 381 DLRRGDLRDRPV-IDLQLFTASIQPNLEINkfDNLKINTGFLVRYQNNDAivntGANTLIPDYNKYEVGTYAILDVDINE 459
Cdd:COG4771 303 NGSLGGSTGSFSdSDDTTYGLELDLTYPLG--GNHTLTLGAEYRYDDLDS----SSFLGGADASRDTYGLFAQDEWKLTD 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 460 TSEFSAGIRYDYSRIkarkwyvesdwtalnydvlfpeFDTGivdglelltrpefTFNNFSTNLGYSKRFGKDYSFLFNYG 539
Cdd:COG4771 377 KLTLTAGLRYDYYST----------------------FGAS-------------NYTAFSPRLGLRYDLSDNLTLRASYG 421
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 540 LAQRMPNPSELFSGGLHHSAARIeIGFLTINKETANKFILSLEKN--NENFGFSISPYYKQIDGFIQLIPTGIRTTIRGA 617
Cdd:COG4771 422 RGFRAPSLAELYGSGTGTPGRYV-LGNPDLKPETSDNYELGLEYRlgNGGLSLSLTGFYTDIKDLIVLVPVGPGPGDVLQ 500
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 618 FpvweYNQVDARIFGVDIDINKKLASHFDYKGSLSLLQG--DDLTNDNPLIHMPSANFSNSIMYSNNDFHQLKIGVNQKT 695
Cdd:COG4771 501 Y----ENVGKARTYGLELELKYRLGKGLTLTASYTYLDSkiDDGDTGEPLPNVPPHKANLGLDYRLPKWWLLLLLTRYYG 576
|
650
....*....|....*....
gi 2194657991 696 VLQQNRFPDYNFTTLDPVT 714
Cdd:COG4771 577 GRYVTPPSGRLEGYTPGYT 595
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
114-787 |
4.66e-30 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 126.41 E-value: 4.66e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 114 SLKKEVISNFTDKSLGDALNTLSGVS----SLNTGNSIVkpmIHGLHSSRLLI--------INNSVRMFDQEWgdehapn 181
Cdd:cd01347 4 VITAEDIEKQPATSLADLLRRIPGVSvtrgGGGGGSTIS---IRGFGPDRTLVlvdglplaSSNYGRGVDLNT------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 182 IDISSSDRIDVIKGANSLRYGSDAVGGLILIRPKKyaIKDSLFGSTTTSINSNGFGGNVTSEI-----IKTFNSGYYTkL 256
Cdd:cd01347 74 IPPELIERVEVLKGPSSALYGSGAIGGVVNIITKR--PTDEFGGSVTAGYGSDNSGSSGGGGFdvsgaLADDGAFGAR-L 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 257 QANYKRFGDFKAPDYYLTNTGLENINASFRTGFNSYEK---GFDAYYSFVNNK-------IGILRSSHIGNVNDLVEAIN 326
Cdd:cd01347 151 YGAYRDGDGTIDGDGQADDSDEERYNVAGKLDWRPDDDtrlTLDAGYQDQDADgpggtlpANGTGSSLGGGPSSNTNGDR 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 327 NREPRIVEDFSYDINFPRQNIFHHlakveafkrfknlGKLSLQLDAQLNRRKEFDLRRGDLRDRPVIDLQLFTASIQPNL 406
Cdd:cd01347 231 DWDYRDRYRKRASLGLEHDLNDTG-------------WTLRANLSYSYTDNDGDPLILNGGNNAAGGDLGRSGYSSERDT 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 407 EINKFD---NLKINTGFLvryqnnDAIVNTGANTLIPDYNKYEVGTYAILDVDINETSEFSAGIRYDYSRIKARKWYVES 483
Cdd:cd01347 298 TQLGFDaglNAPFGTGPV------AHTLTLGVEYRREELDEKQTALYAQDTIELTDDLTLTLGLRYDHYDQDSKDTIAGG 371
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 484 DWTALNYDVLfpefdtgivdglelltrpeftfnNFSTNLGYskRFGKDYSFLFNYGLAQRMPNPSELFSGGLHHSAAriE 563
Cdd:cd01347 372 TTAKKSYSHW-----------------------SPSLGLVY--KLTDGLSLYASYSQGFRAPSLGELYGGGSHGGTA--A 424
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 564 IGFLTINKETANKFILSLE-KNNENFGFSISPYYKQIDGFIQLIPTGIRTTIRGAFpvweYNQVDARIFGVDIDINKKLA 642
Cdd:cd01347 425 VGNPNLKPEKSKQYELGLKyDPGDGLTLSAALFRIDIKNEIVSTPTNTGLGLVTVY----VNGGKARIRGVELEASYDLT 500
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 643 SHFDYKGSLSLLQG-----DDLTNDNPLIHMPSANFSNSIMYsnnDFHQLKIGVNqktvlqqnrfpdYNFTTLDPVTQQQ 717
Cdd:cd01347 501 DGLGLTGSYTYTDTevkrtDGATTGNRLPGIPKHTANLGLDY---ELPDEGLTAG------------GGVRYRGKQYADT 565
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2194657991 718 VFVDISSTPPSYTLFGFSssaVFYPFKKGSMeVGFNVDNLFNVSYRENLNRLR---YFADDLGRNLNLKIKIN 787
Cdd:cd01347 566 ANGNNTVKVPGYTLVDLS---ASYQFTKNLT-LRLGVNNLFDKDYYTSLSVRGsglYGYYGPGRTYYLSVSYK 634
|
|
| TonB-hemin |
TIGR01785 |
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ... |
95-788 |
2.59e-26 |
|
TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273807 [Multi-domain] Cd Length: 665 Bit Score: 114.80 E-value: 2.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 95 LKEVVVkTNTKTEVTSIEKSLKKEVISNFTDKSLG-----DALNTLSGVSSLNTGNSI-VKPMIHGLHSSRLLIINNSVR 168
Cdd:TIGR01785 1 LDTVTV-TATRTRQVLSEAPASVSVISGEQIESKQannlaDALNTVPGVDVTGGGRPPgQSINIRGLQDNRVLVVVDGAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 169 M-FDQEWGDEHAPNIDISSSDRIDVIKGANSLRYGSDAVGGLILIRPKKyaIKDSL-----FG---STTTSINSNGFGGN 239
Cdd:TIGR01785 80 QnYQRGGAHNGSLFVDPELLKRIEIVKGPSSSLYGSGALGGVVAFRTKD--AADLLrpgqlFGglaKLSYGSNNNSFGGS 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 240 V-----TSEIIKTFNSGYYTKlQANYKRFGDFKA-PDYYLTNTGL----ENINASFRTGFNSyekgFDAYYSFvnnkigI 309
Cdd:TIGR01785 158 VavagrLDDNLDALVAATYRD-GGNYRNGNKEEAtNSAYVQKNLLaklgWQLDDAQRLEFSY----FTTEGSL------D 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 310 LRSSHIGNVNDLVEAINNREPRIVEDFSYDINFprqnifhhlakveafkRFKNLGKLSLQLDAQL--NRRKEFDLR--RG 385
Cdd:TIGR01785 227 EAQNSGPGTEYVLGSSSTLLASSTRDRSATLTY----------------NWTPEDNPWLDATASLyyNRTENDNDRsaRG 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 386 DLRDRPvIDLQLFTASIQPNLEINKFDNLKINTG-----FLVRYQNNDAIVNTGANTLIPDYNKYEVGTYAILDVDI-NE 459
Cdd:TIGR01785 291 VGREEG-YQYTTYGATLQNTSRFDVASWSTLTYGvdwmkDKRRTESFDPNSVTTIVPNPPSAKEYFFGLFLQDNIPLlDD 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 460 TSEFSAGIRYDYsrikarkwyvesdwtalnydvlfPEFDTGIVDGLELltrPEFTFNNFSTNLGYSKRFGKDYSFLFNYG 539
Cdd:TIGR01785 370 RLTLSAGLRYDH-----------------------YKLSPKTTADTEA---VDRSYSRWSPSLGLSYKPVDWLTLYASYS 423
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 540 LAQRMPNPSELFSGGLHH--SAARIEIGFLTINKETANKFIL-------SLEKNNENFGFSISPYYKQIDGFIQLIPTGI 610
Cdd:TIGR01785 424 QGFRAPSIDELYGTGDHPgtPGGYTFAPNPNLKPETSKTWELganlsfdNLLLDNDQLQFKVAYFYNDVKDFIDLTIGVT 503
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 611 RTTIRGAFPVWEY-NQVDARIFGVDIDINKKLAShFDYKGSLSLLQGDDLTNDNPLIHMPSanfsnsimysnndfhqlki 689
Cdd:TIGR01785 504 DNVTAGMNNITQYvNIDGARIRGIEASASYDAGL-WATGLSYGYTIGKDQNTNQWLSNIPP------------------- 563
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 690 gvnQKTVLQQN-RFPDYNFTT------LDPVTQQQVFVDISSTP----PSYTLFGFSSSavFYPFKKGSMEVGFNVDNLF 758
Cdd:TIGR01785 564 ---LKLVVTVGyRFPDRRLDLgakaayYERQSESPTTEDVAANGllttPGYTVVDLYAT--YQPNAVKGLTVRFGVNNLT 638
|
730 740 750
....*....|....*....|....*....|
gi 2194657991 759 NVSYRENLNRLRYFAddlGRNLNLKIKINY 788
Cdd:TIGR01785 639 DRKYTPAQSVPGAGP---GRNFKGSVKYQF 665
|
|
| BtuB |
COG4206 |
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism]; |
98-313 |
1.22e-19 |
|
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
Pssm-ID: 443355 [Multi-domain] Cd Length: 276 Bit Score: 89.93 E-value: 1.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 98 VVV----KTNTKTEVTSIEKSLKKEVISNFTDKSLGDALNTLSGVSSLNTG--NSIVKPMIHGLHSSRLLIINNSVRMFD 171
Cdd:COG4206 1 VVVtatrLEQSKSDLTGSVTVIDAEELERSGATSLADALRRVPGVQVSSSGgpGSAASISIRGLGSNQTLVLIDGVPLND 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 172 QEWGDEHAPNIDISSSDRIDVIKGANSLRYGSDAVGGLILIRPKKyaIKDSLFGSTTTSINSNGFGGNVTSEIIKTFNSG 251
Cdd:COG4206 81 PSLGGVDLSLIPPDDIERIEVLKGAASALYGSDAIGGVINITTKK--GKKGFKGSVSASYGSFGTRRLSASLSGGAGKFS 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2194657991 252 YYtkLQANYKRFGDFKAPDYYLTNT-GLENINASFRTGFNSYEKG-FDAYYSFVNNKIGILRSS 313
Cdd:COG4206 159 YS--LSASYRRSDGYRYNDPDLRNNdGYENTSLNARLGYKLGDNGsLSLSGGYSDSERGYPGAV 220
|
|
| TonB-hemlactrns |
TIGR01786 |
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model ... |
93-788 |
8.90e-19 |
|
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273808 [Multi-domain] Cd Length: 715 Bit Score: 91.32 E-value: 8.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 93 EELKEVVVKTNTKTEVTSIEKSLKKEVISNFTDKSLG-----DALNTLSGVSSLNTGNSIVK-PMIHGLHSSRLLIINNS 166
Cdd:TIGR01786 1 DTITVTATRTADPQRRDLSVTPASVSVISREQLKSQQvrnlrDLLRYEPGVSVVEGGRGGSQgINIRGLDKNRVAVLVDG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 167 VRMFDQEWG----DEHAPNIDISSSDRIDVIKGANSLRYGSDAVGGLILIRPKKyaIKDSL-----FG---STTTSINSN 234
Cdd:TIGR01786 81 IRQNTSYGGqgstFYAINSIDPELIKSIEIVKGASSSLYGSGALGGVVAFRTKD--AADLLkpgkdLGglsKLGYSSANN 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 235 GFGGNVtseiiktfnsgyytklqANYKRFGDFKAPDYYLTNTGLENINASFRTGFNSYEKGFDAYYSFVNN----KIGI- 309
Cdd:TIGR01786 159 RFTQSV-----------------AAAGRNDDVDALVQATYRRGHELKNGNKANIGNESKRSKPNPSDYKSQsflaKLGWq 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 310 LRSSHIgnVNDLVEAINNREprIVEDFSYDINFPRQNIFHHLAKVEAFKRFKNlGKLSLQLDAQLN--------RRKEFD 381
Cdd:TIGR01786 222 LNDAHR--LGLSLEYTQTDY--DEPEMTNTSYLTKPLGAPLLSSTVVLGDSKT-RDRRTGLDYELNpdnswldtVKLALD 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 382 LRRGDLRDRpvidLQLFTASIQPNLEINKFD-------NLKINTGFLVRYQN----------------------NDAIVN 432
Cdd:TIGR01786 297 KQYIQLYNY----LNATSASDYPGVDKNGRYkdkydyyTLGFDTNNKIEFSVhslsltygldrfkdkvstgdsrRNLPTA 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 433 T----GANTLIPDYNKYEVGTYAILDVDINETSEFSAGIRYDYSRIKARKWYVESDWTAlnydvlfpefdtgivdglell 508
Cdd:TIGR01786 373 AynlyGYEGENRPVKGSNFGLFLQDNIKLGDWLSLSAGLRYDHYKTDPKADESKDYGAI--------------------- 431
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 509 trpEFTFNNFSTNLGYSKRFGKDYSFLFNYGLAQRMPNPSELFSGGLHHSAARIEI-GFLTINKETANKFILSLEKNNEN 587
Cdd:TIGR01786 432 ---SKTYSRWSPSLGLTYKPTPWLTLYYSYSQGFRAPSFDELYGTGAHPGGGPYTFlPNPNLKPETSKNWEIGINLHFDQ 508
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 588 FGFSISPYYKQIDGFIQL-IPTGIRTTIRGAFPVWEYNQV---DARIFGVDIDINKKLASHFDYK------GSLSLLQGD 657
Cdd:TIGR01786 509 LDFKVSYFRNDYKDFIDLgIGVTAKGNMAQVGSNTITNYVnidNARIRGIELSGRYDLGSFFSGPdgwtttLKYGYTKGK 588
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 658 DLTNDNPLIHMPSANFSNSIMYSNNDfHQLKIGVNQKTVLQQNRFPDYNfttlDPVTQQQVFVDISSTPPSYTLFGFSss 737
Cdd:TIGR01786 589 DSDTNPWLNAITPLKVVLGLGYDHPD-EKWGVGLTLTFSGAKDAVDAYA----TYYENGEAAKAGPLRTPSYTVVDLY-- 661
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 2194657991 738 aVFYPFKKGsMEVGFNVDNLFNVSYRE-----NLNRLRYFADDLGRNLNLKIKINY 788
Cdd:TIGR01786 662 -GYYKPNKN-LTLRFGVYNLLDRKYTTwesarQAGPLATGYTAPGRNYKASVEYKF 715
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
416-787 |
5.17e-17 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 84.82 E-value: 5.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 416 INTGFLVRYQNNDAIVNTGANTLIPDYNKYEVGT------YAILDVDINETSEFSAGIRYDYSRIKARKWYVESDWTALN 489
Cdd:pfam00593 138 ELRTAGLDYRRLDDDAYDPYDPANPSSSSYSDTTtdsyglYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGDNFSRS 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 490 YDVLFPefdtgivdglelltrpeftfnnfSTNLGYskRFGKDYSFLFNYGLAQRMPNPSELFSGGLHHSAARIEIGFLTI 569
Cdd:pfam00593 218 YSAFSP-----------------------RLGLVY--KPTDNLSLYASYSRGFRAPSLGELYGSGSGGGGGAVAGGNPDL 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 570 NKETANKFILSLEKNNENFGFSISPYYKQIDGFIQLIPTGIRTTIRGAFPvweYNQVDARIFGVDIDINKKLASHFDYKG 649
Cdd:pfam00593 273 KPETSDNYELGLKYDDGRLSLSLALFYIDIKNLITSDPDGPGLGGTVYTY---TNVGKARIRGVELELSGRLWGLGLSGG 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 650 SLSLLQGDD----LTNDNPLIHMPSANFSNSIMYSNNDFhQLKIGVNQKTVLQQNRFpDYNFTTLDPVtqqqvfvdisst 725
Cdd:pfam00593 350 GYTYTDADDdadaDDTGNPLPNVPRHTANLGLTYDFPLG-GWGARLGARYVGSGERR-YGDAANTFKT------------ 415
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2194657991 726 pPSYTLFGFSssaVFYPFKKGsMEVGFNVDNLFNVSYRENLNRLRYFADDL---GRNLNLKIKIN 787
Cdd:pfam00593 416 -PGYTLVDLS---AGYRLNKN-LTLRLGVNNLFDKYYKRYYSSGGGNLGGYpgpGRTFYLGLSYK 475
|
|
| Plug |
pfam07715 |
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ... |
104-208 |
1.28e-15 |
|
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Pssm-ID: 462243 [Multi-domain] Cd Length: 107 Bit Score: 73.07 E-value: 1.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 104 TKTEVTSIEKSLKKEVISNFTDKSLGDALNTLSGVSSLNTGNSIV-KPMIHGLHSSRLLIINNSVRMFDQEWGDEHAPNI 182
Cdd:pfam07715 1 DLRDTPGSVSVVTAEDIEDQGATNLADALRGVPGVSVSSGGGGGGsSISIRGFGSNRVLVLVDGVPLNSGGGGSVDLNSI 80
|
90 100
....*....|....*....|....*.
gi 2194657991 183 DISSSDRIDVIKGANSLRYGSDAVGG 208
Cdd:pfam07715 81 DPEDIERVEVLKGPASALYGSGAIGG 106
|
|
| CarbopepD_reg_2 |
pfam13715 |
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ... |
15-100 |
1.26e-11 |
|
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.
Pssm-ID: 433425 [Multi-domain] Cd Length: 88 Bit Score: 61.07 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 15 FSGKITDFHDNSLIVGASIQIINLNKFTTSNLEGEFVFNNLCEGKLTLEIKHVACETKRLVINLTKNTFKEISLEHHLE- 93
Cdd:pfam13715 1 ISGTVVDENTGEPLPGATVYVKGTTKGTVTDADGNFELKNLPAGTYTLVVSFVGYKTQEKKVTVSNDNTLDVNFLLKEDa 80
|
....*...
gi 2194657991 94 -ELKEVVV 100
Cdd:pfam13715 81 lLLDEVVV 88
|
|
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
93-762 |
5.07e-09 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 59.94 E-value: 5.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 93 EELKEVVV--KTNTKTEVTSIEKS---LKKEVISNFTDKSLGDALNTLSGVSSLNTGNSIVKP--MIHGL---HSSRLLI 162
Cdd:COG4772 21 TTLETVVVtgSRAAEARLKDVPGSvsvVDREELENQAATSLREVLRRVPGVNVQEEDGFGLRPniGIRGLgprRSRGITL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 163 INNSVRMFDqewgdehAPNIDISSS--------DRIDVIKGANSLRYGSDAVGGLILIRPKkyAIKDSLFGSTTTSINSN 234
Cdd:COG4772 101 LEDGIPIAP-------APYGDPAAYyfpdlermERIEVLRGAAALRYGPQTVGGAINFVTR--TIPTAFGGELRVTGGSF 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 235 GF-------GGNVTseiiktfNSGYYtkLQANYKRFGDFKApdyyltNTGLENINASFRTGFNSYEKG-FDAYYSFVNnk 306
Cdd:COG4772 172 GYrrthasvGGTVG-------NFGYL--VEYSRKRGDGFRD------NSGFDINDFNAKLGYRLSDRQeLTLKFQYYD-- 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 307 igilrsshignvndlveaINNREPRIVEDFSYDINfPRQNIFhhlakveAFKRFK-NLGKLSLQLDAQLNRRKEFDLR-- 383
Cdd:COG4772 235 ------------------EDANTPGGLTDAQFDAD-PRQSYR-------PADQFDtRRTQLSLRYEHQLSDNTTLTTTay 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 384 ----------RGDLRDRPVIDLQLFTAS-------IQPNLEINkFDNLKINTGFLV------------RYQNNDAIVNTG 434
Cdd:COG4772 289 yndfsrnwyiRQNTADPNTPGLGLRGNPrgyrsygIEPRLTHR-FELGGVPHTLEVglryhreeedrkQYVNTYGQGRSG 367
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 435 ANTliPDYNKYE---VGTYAILDVDINETSEFSAGIRYDYSRIKARKWYVESDWTALNYDvlfpefdtgivdglelltrp 511
Cdd:COG4772 368 AGL--RRDRRFSadaLAAYAQNRFELTGRLTLTPGLRYEHIRRDRTDRYSTRTGGDDSGS-------------------- 425
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 512 eFTFNNFSTNLGYSKRFGKDYSFLFNYGLAQRMPNPSELFSGGLhhsaarieiGFLTINKETANkfilSLE-----KNNE 586
Cdd:COG4772 426 -NSYSEFLPGLGLLYQLTDNLQLYANVSRGFEPPTFGDLAYGNG---------GNPDLKPEKSW----NYElgtrgRIGN 491
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 587 NFGFSISPYYKQIDGFIQ--LIPTGIRTTIRgafpvweyNQVDARIFGV----DIDINKKLASHFDYKGSLSLLQ----- 655
Cdd:COG4772 492 GLSAEVALFYIDYDNELGscSAAGGDRSTFT--------NAGETRHQGLelalDYDLLKGGGLGLPLFAAYTYTDaefts 563
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 656 -GDDLTNDNPLIHMPSANFSNSIMYSNNDFHqlkIGVNqktvlqqnrfpdYNFttldpvtQQQVFVDISSTP-------- 726
Cdd:COG4772 564 dFGPVFAGNRLPYVPRHQLTAGLGYEHGGWT---ANLN------------GRY-------VSEQFTDAANTVadgsfgki 621
|
730 740 750
....*....|....*....|....*....|....*.
gi 2194657991 727 PSYTLFGFSSSavfYPFKKGsMEVGFNVDNLFNVSY 762
Cdd:COG4772 622 PSYTVLDLSAS---YDFGKN-LSLFAGVNNLFDKRY 653
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
118-782 |
8.41e-09 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 58.96 E-value: 8.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 118 EVISNFTDKSLGDALNTLSGVSSLNTGNSIVKPM--IHGLHSSrLLIINNSVRMFDQEWGDEHAPnIDISSSDRIDVIKG 195
Cdd:TIGR01783 12 QELEDQQAGSLSEALQRVPGVVVGGSGGTTQFGNitIRGFGLE-VDIDNVYLDGVPLLSRGNLAI-VDPAMVERVEVLRG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 196 ANSLRYGSDAVGGLILIRPKKyaIKDSLFGSTT---TSINSNGFGGNVTSEIIKTFN-SGYYTKLQANYKRFGDFKAPDY 271
Cdd:TIGR01783 90 PASLLYGGSAPGGVINIVTKR--PQDEPKGSVTfgaGTRSGYRTAFDLGGPLGADGTfRGRLNGARQDGDSFYDGAGEET 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 272 YLTNTGL-----ENINASFRTgfnSYEKGFD-AYYSFVNNKIGILRSShiGNVNDLVEAINNREPRIVEDFSYDINFPRQ 345
Cdd:TIGR01783 168 RLGATATdwqldDRTLLRLGA---YYQKERDrGGYGGLPASGGTSGRD--LSSDRYLGTSSNRNYDDREYLSYGLSLEYQ 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 346 NIFHHLAKVEA-FKRFKNLGKlSLQLDAQLNRRKEFD---LRRGDLRDRPVIDLQL---F-TASIQPNLEINKFDNLKIN 417
Cdd:TIGR01783 243 FNDVWTGKQNLrYSYFDTDSN-QVQASGYSSDGGLFGrslTVVNVKQDRVQIDAGLdgeFeTGPIEHDLLLGVSYGQRTT 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 418 TGFLVRYQNNDAIVN----TGANTLIPDYNKYEVGT--------YAILDVDINETSEFSAGIRYDYSRIKArkwyvesdW 485
Cdd:TIGR01783 322 NRFNNTGYPSDNIYSltatSSARTDIGDSPKDRALSsttkalngVALQRILLADKWTLTLGGRYDSVDVKS--------N 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 486 TALNYdvlfpefDTGivdglellTRPEFTFnNFSTNLGYSkrFGKDYSFLFNYGLAQRMPNPSELFSGglhhSAARIEIG 565
Cdd:TIGR01783 394 NGVAG-------STG--------KRDDSQF-TPSLGVAYK--PTDDWSLYASYAESFKPGGYYPKGAG----NSGDILEP 451
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 566 FLTINKETANKFilsleKNNENFGFSISPYYKQIDGFIQLIPTGIRTTIRGAfpvweynqvDARIFGVDIDINKKLASHF 645
Cdd:TIGR01783 452 EKGKNYELGVRY-----DLGDSLLATAALFRITKDNQLVQDPVNGTFSVNAG---------KTRNRGVELEARGYLTPGL 517
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 646 DYKGSLSLLQGDDlTNDNplihmPSANFSNSIMYSNNdfHQLKIGVNQKTVLQQNRFpdyNFTTLDPVTQQQVFVDISST 725
Cdd:TIGR01783 518 SLSAGYTYTDAEF-TEDT-----NGDTQGNTVPFVPK--HTASLWASYAPPVGDNGL---TLGGGVQYTGKAYVDGGNTG 586
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2194657991 726 P-PSYTLFGFSSSAVFYPFKKGSmeVGFNVDNLFNVSYRENLNRLRYFADDL---GRNLNL 782
Cdd:TIGR01783 587 KvPSYTVVDLSVRYDLTKKKNLT--LALNVNNLFDRDYYTSGYRWGPSAYIYpgaPRTVGL 645
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
100-254 |
9.39e-07 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 52.58 E-value: 9.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 100 VKTNTKTEVTSI----EKSLKKEVISNftdksLGDALNTLSGVSSLNTGNSIVKPMIHGLHSSRLLIINNSVRM------ 169
Cdd:PRK10064 40 VEQNLKDAPASIsvitQEDLQRKPVQN-----LKDVLKEVPGVQLTNEGDNRKGVSIRGLDSSYTLILIDGKRVnsrnav 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 170 -----FDQEWgdehapnIDISSSDRIDVIKGANSLRYGSDAVGGLILIRPKKyaIKDSLFGSTT--TSINSNGFGGNvts 242
Cdd:PRK10064 115 frhndFDLNW-------IPVDAIERIEVVRGPMSSLYGSDALGGVVNIITKK--IGQKWHGTVTvdTTIQEHRDRGD--- 182
|
170
....*....|..
gi 2194657991 243 eiikTFNSGYYT 254
Cdd:PRK10064 183 ----TYNGQFFT 190
|
|
| Fiu |
COG4774 |
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; |
108-238 |
6.85e-06 |
|
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
Pssm-ID: 443806 [Multi-domain] Cd Length: 639 Bit Score: 49.49 E-value: 6.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 108 VTSIekslKKEVISNFTDKSLGDALNTLSGVS-SLNTGNSIVKPMIHGLHSSRLLIINNsVRMFDQewgdehaPNIDISS 186
Cdd:COG4774 13 VTVV----TRELIEDQGATSLADALRNVPGVTfGAGEGGNGDSFSIRGFSASGDIYVDG-LRDPGQ-------YRRDTFN 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2194657991 187 SDRIDVIKGANSLRYGSDAVGGLILIRPKKyAIKDSlFGSTTTSINSNGFGG 238
Cdd:COG4774 81 LERVEVLKGPASVLYGRGSPGGVINLVTKR-PTDEP-FTEVTLTYGSDGQRR 130
|
|
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
117-236 |
1.15e-05 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 48.74 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 117 KEVISNFTDKSLGDALNTLSGVSSLNT-GNSIVKPMIHGLHSSRLLIinNSVRMFDQEWGDehapnIDISSSDRIDVIKG 195
Cdd:COG4773 74 RQLIEDQGATTLDDALRNVPGVTVSSYdGGGRDSFSIRGFSIDNYLR--DGLPLGGFGGGQ-----PDTANLERVEVLKG 146
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2194657991 196 ANSLRYGSDAVGGLILIRPKKyaIKDSLFGSTTTSINSNGF 236
Cdd:COG4773 147 PAGLLYGAGSPGGLVNLVTKR--PTAEPQGEVSLSAGSWDT 185
|
|
| PRK13486 |
PRK13486 |
TonB-dependent receptor; |
102-241 |
1.59e-05 |
|
TonB-dependent receptor;
Pssm-ID: 139606 [Multi-domain] Cd Length: 696 Bit Score: 48.48 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 102 TNTKTEVTSIEKslkKEVISN-FTDksLGDALNTLSGV----SSLNTGNSIVKpmIHGLHSSRLLIINNSVRmfdQEWGD 176
Cdd:PRK13486 40 TNAAASVSVISQ---EELQSSqYHD--LAEALRSVEGVdvesGTGKTGGLEIS--IRGMPASYTLILIDGVR---QGGSS 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2194657991 177 EHAPN----------IDISSSDRIDVIKGANSLRYGSDAVGGLILIRPKKYAikDSLFGSTTTSIN---SNGFGGNVT 241
Cdd:PRK13486 110 DVTPNgfsamntgfmPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKNA--DKWLSSVNAGLNlqeSNKWGNSSQ 185
|
|
| PRK13484 |
PRK13484 |
IreA family TonB-dependent siderophore receptor; |
102-215 |
6.93e-05 |
|
IreA family TonB-dependent siderophore receptor;
Pssm-ID: 139605 [Multi-domain] Cd Length: 682 Bit Score: 46.54 E-value: 6.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 102 TNTKTEVTSIEK-SLKKEVISNftdksLGDALNTLSGVSsLNTGNSIVKPMIHGLHSSRLLIINNSVRmfdqEWGDEHAP 180
Cdd:PRK13484 45 RNAPASVSVITSeQLQKKPVSD-----LVDAVKDVEGIS-ITGGNEKPDISIRGLSGDYTLILVDGRR----QSGRESRP 114
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2194657991 181 NID----------ISSSDRIDVIKGANSLRYGSDAVGGLILIRPK 215
Cdd:PRK13484 115 NGSggfeagfippVEAIERIEVIRGPMSSLYGSDAIGGVINIITK 159
|
|
| btuB |
PRK10641 |
TonB-dependent vitamin B12 receptor BtuB; |
126-301 |
3.15e-04 |
|
TonB-dependent vitamin B12 receptor BtuB;
Pssm-ID: 236730 [Multi-domain] Cd Length: 614 Bit Score: 44.21 E-value: 3.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 126 KSLGDALNTLSGVSSLNTG-----NSIvkpMIHGLHSSRLLIINNSVRMfdQEWGDEHAPNID---ISSSDRIDVIKGAN 197
Cdd:PRK10641 60 KSVNDVLRRLPGVDIAQNGglgqlSSL---FIRGTNSSHVLVLIDGVRL--NQAGISGSADLSqipISLVQRIEYIRGPR 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 198 SLRYGSDAVGGLILI---RPKKyaikdslfGST-TTSINSNG-----------FGGNVTSeiikTFNSGY-YTK---LQA 258
Cdd:PRK10641 135 SAVYGSDAIGGVVNIittRDKP--------GTTlSAGWGSNGyqnydgstqqqLGDNTRV----TLAGDYtYTKgfdVVA 202
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2194657991 259 NYKrFGDFKAPDY--YLTNTGLENINASFRTGFNSYEKGF--------DAYYS 301
Cdd:PRK10641 203 YGN-TGTQAQPDRdgFMSKTLWGGLEHQFNDQWSGFVRGYgydnrtdyDAYYS 254
|
|
| PRK13513 |
PRK13513 |
ligand-gated channel protein; |
130-234 |
5.17e-04 |
|
ligand-gated channel protein;
Pssm-ID: 184104 [Multi-domain] Cd Length: 659 Bit Score: 43.60 E-value: 5.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 130 DALNTLSGVSsLNTGNSIVKPMIHGLHSSRLLIINNSVRMFDQEwgdeHAPNID-----------ISSSDRIDVIKGANS 198
Cdd:PRK13513 74 DALKDVPGVV-VTGGGSTSDISIRGMAAKYTLILVDGKRVDTRS----TRPNSDgsgieqgwlppLAAIERIEVVRGPMS 148
|
90 100 110
....*....|....*....|....*....|....*...
gi 2194657991 199 LRYGSDAVGGLILIRPKKYAIK--DSLFGSTTTSINSN 234
Cdd:PRK13513 149 SLYGSDAMGGVINIITRKVQKEwhGSLRADATLQEDSK 186
|
|
| OMP_RagA_SusC |
TIGR04056 |
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade ... |
16-282 |
1.25e-03 |
|
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 274948 [Multi-domain] Cd Length: 981 Bit Score: 42.58 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 16 SGKITDFhDNSLIVGASIQIINLNKFTTSNLEGEFVFNNlcEGKLTLEIKHVACETKRLVINlTKNTFKeISLEHHLEEL 95
Cdd:TIGR04056 4 TGVVVDE-TGEPLIGASVVVKGTTNGTITDIDGNFSLKV--PPGAVLVFSYIGYKTQEVKVK-GQKNLN-ITLKEDTQEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 96 KEVVV-------KTNTKTEVTSI-EKSLKKEVISNFTDkSLGDALNTLS-----------------GVSSLNTGNSivkP 150
Cdd:TIGR04056 79 DEVVVvgygtqkKKSLTGAVSTVkAKELKKVPVSNLSN-ALQGKVAGVIitqssgepggdaeiwirGISSFGGNNS---P 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 151 MIhglhssrlLI----INNSVRMFDqewgdehaPNiDISSsdrIDVIKGANSLR-YGSDAVGGLILI---RPKKyaikds 222
Cdd:TIGR04056 155 LY--------VIdgvpRDNGLSDLN--------PE-DIES---ISVLKDASATAiYGSRGANGVILIttkRGKE------ 208
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2194657991 223 lfGSTTTSINSNgFGGNVTSEIIKTFNSGYYTKLqANYKRFGDFKAPDYYLTNTGLENIN 282
Cdd:TIGR04056 209 --GKPKISYNAE-FGFSTPTRLPEMLNAYEYAEL-YNEALLNRGSSPPDIYTDEEIEAYR 264
|
|
| CarboxypepD_reg |
pfam13620 |
Carboxypeptidase regulatory-like domain; |
14-67 |
8.39e-03 |
|
Carboxypeptidase regulatory-like domain;
Pssm-ID: 433354 [Multi-domain] Cd Length: 81 Bit Score: 36.10 E-value: 8.39e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2194657991 14 SFSGKITDfHDNSLIVGASIQIIN----LNKFTTSNLEGEFVFNNLCEGKLTLEIKHV 67
Cdd:pfam13620 1 TISGTVTD-PSGAPVPGATVTVTNtdtgTVRTTTTDADGRYRFPGLPPGTYTVTVSAP 57
|
|
| |
