|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08486 |
PRK08486 |
single-stranded DNA-binding protein; Provisional |
1-171 |
7.22e-82 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 236275 [Multi-domain] Cd Length: 182 Bit Score: 239.75 E-value: 7.22e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 1 MFNKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRF-TANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLR 79
Cdd:PRK08486 1 MFNKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFkKQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 80 FEQWSDQNGQNRSKHSIQVENMEMLGANNTPQ---------NSGNFSNGY-ANYENQSYDPYAGQNNFEKTPQKMQNSNQ 149
Cdd:PRK08486 81 FESWMDQNGQKRSKHTITAESMQMLDSKSDNPqanamqdnsFHENFNNNYpGNYNNPSQDPYMNQAQSYNQNAYAKENQQ 160
|
170 180
....*....|....*....|....*..
gi 2199891832 150 NQ-----EKIKEIDVdaydsDDTDLPF 171
Cdd:PRK08486 161 AQppkyeNSVPEIDI-----DEEEIPF 182
|
|
| ssb |
TIGR00621 |
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ... |
1-171 |
2.10e-58 |
|
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273179 [Multi-domain] Cd Length: 164 Bit Score: 179.54 E-value: 2.10e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 1 MFNKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFTA-NGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLR 79
Cdd:TIGR00621 3 MVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDqDGEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 80 FEQWSDQNGQNRSKHSIQVENMEMLGANNTPQNSGNFSNGYANyENQSYDPYAGQNNfektpqkmQNSNQNQEKIKEiDV 159
Cdd:TIGR00621 83 TRKWEDQNGQKRSKTEIIADNVQLLDLLGARAQGGEFSGGGGS-GNRPQGGQEQSAT--------GKDPAQSAPQSG-SA 152
|
170
....*....|..
gi 2199891832 160 DAYDSDDTDLPF 171
Cdd:TIGR00621 153 DPIDGDDDEIPF 164
|
|
| Ssb |
COG0629 |
Single-stranded DNA-binding protein [Replication, recombination and repair]; |
3-114 |
4.47e-43 |
|
Single-stranded DNA-binding protein [Replication, recombination and repair];
Pssm-ID: 440394 Cd Length: 116 Bit Score: 139.20 E-value: 4.47e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 3 NKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFT-ANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRFE 81
Cdd:COG0629 2 NKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKdQDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRTR 81
|
90 100 110
....*....|....*....|....*....|...
gi 2199891832 82 QWSDQNGQNRSKHSIQVENMEMLGANNTPQNSG 114
Cdd:COG0629 82 SWEDKDGQKRYTTEVVADEIQFLGSRPSGGGGG 114
|
|
| SSB |
pfam00436 |
Single-strand binding protein family; This family includes single stranded binding proteins ... |
2-104 |
1.59e-42 |
|
Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.
Pssm-ID: 425680 Cd Length: 103 Bit Score: 137.37 E-value: 1.59e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 2 FNKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRFE 81
Cdd:pfam00436 1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRGEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTR 80
|
90 100
....*....|....*....|...
gi 2199891832 82 QWSDQNGQNRSKHSIQVENMEML 104
Cdd:pfam00436 81 KYEDQEGQKRYVTEIVADEVQFL 103
|
|
| SSB_OBF |
cd04496 |
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ... |
5-104 |
1.21e-33 |
|
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.
Pssm-ID: 239942 Cd Length: 100 Bit Score: 114.63 E-value: 1.21e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 5 VVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRFEQWS 84
Cdd:cd04496 1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRDEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWE 80
|
90 100
....*....|....*....|
gi 2199891832 85 DQNGQNRSKHSIQVENMEML 104
Cdd:cd04496 81 DKDGQKRYGTEVVADRIEFL 100
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08486 |
PRK08486 |
single-stranded DNA-binding protein; Provisional |
1-171 |
7.22e-82 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 236275 [Multi-domain] Cd Length: 182 Bit Score: 239.75 E-value: 7.22e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 1 MFNKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRF-TANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLR 79
Cdd:PRK08486 1 MFNKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFkKQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 80 FEQWSDQNGQNRSKHSIQVENMEMLGANNTPQ---------NSGNFSNGY-ANYENQSYDPYAGQNNFEKTPQKMQNSNQ 149
Cdd:PRK08486 81 FESWMDQNGQKRSKHTITAESMQMLDSKSDNPqanamqdnsFHENFNNNYpGNYNNPSQDPYMNQAQSYNQNAYAKENQQ 160
|
170 180
....*....|....*....|....*..
gi 2199891832 150 NQ-----EKIKEIDVdaydsDDTDLPF 171
Cdd:PRK08486 161 AQppkyeNSVPEIDI-----DEEEIPF 182
|
|
| ssb |
TIGR00621 |
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ... |
1-171 |
2.10e-58 |
|
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273179 [Multi-domain] Cd Length: 164 Bit Score: 179.54 E-value: 2.10e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 1 MFNKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFTA-NGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLR 79
Cdd:TIGR00621 3 MVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDqDGEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 80 FEQWSDQNGQNRSKHSIQVENMEMLGANNTPQNSGNFSNGYANyENQSYDPYAGQNNfektpqkmQNSNQNQEKIKEiDV 159
Cdd:TIGR00621 83 TRKWEDQNGQKRSKTEIIADNVQLLDLLGARAQGGEFSGGGGS-GNRPQGGQEQSAT--------GKDPAQSAPQSG-SA 152
|
170
....*....|..
gi 2199891832 160 DAYDSDDTDLPF 171
Cdd:TIGR00621 153 DPIDGDDDEIPF 164
|
|
| Ssb |
COG0629 |
Single-stranded DNA-binding protein [Replication, recombination and repair]; |
3-114 |
4.47e-43 |
|
Single-stranded DNA-binding protein [Replication, recombination and repair];
Pssm-ID: 440394 Cd Length: 116 Bit Score: 139.20 E-value: 4.47e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 3 NKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFT-ANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRFE 81
Cdd:COG0629 2 NKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKdQDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRTR 81
|
90 100 110
....*....|....*....|....*....|...
gi 2199891832 82 QWSDQNGQNRSKHSIQVENMEMLGANNTPQNSG 114
Cdd:COG0629 82 SWEDKDGQKRYTTEVVADEIQFLGSRPSGGGGG 114
|
|
| SSB |
pfam00436 |
Single-strand binding protein family; This family includes single stranded binding proteins ... |
2-104 |
1.59e-42 |
|
Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.
Pssm-ID: 425680 Cd Length: 103 Bit Score: 137.37 E-value: 1.59e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 2 FNKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRFE 81
Cdd:pfam00436 1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRGEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTR 80
|
90 100
....*....|....*....|...
gi 2199891832 82 QWSDQNGQNRSKHSIQVENMEML 104
Cdd:pfam00436 81 KYEDQEGQKRYVTEIVADEVQFL 103
|
|
| SSB_OBF |
cd04496 |
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ... |
5-104 |
1.21e-33 |
|
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.
Pssm-ID: 239942 Cd Length: 100 Bit Score: 114.63 E-value: 1.21e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 5 VVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRFEQWS 84
Cdd:cd04496 1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRDEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWE 80
|
90 100
....*....|....*....|
gi 2199891832 85 DQNGQNRSKHSIQVENMEML 104
Cdd:cd04496 81 DKDGQKRYGTEVVADRIEFL 100
|
|
| PRK06863 |
PRK06863 |
single-stranded DNA-binding protein; Provisional |
3-171 |
2.52e-31 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 136097 [Multi-domain] Cd Length: 168 Bit Score: 110.83 E-value: 2.52e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 3 NKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFT--ANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRF 80
Cdd:PRK06863 5 NKVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTdkNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRLKT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 81 EQWSDQNGQNRSKHSIQVENMEMLGANNTPQnsgnfSNGYANYENQSYDPY-AGQNNFEKTPQKMQNSNQNQEKIKEIDV 159
Cdd:PRK06863 85 RKWQDQNGQDRYTTEIQGDVLQMLGGRNQRN-----AGGYGNSGPAPQQSYqAGQTNNGNSQQASRPAPQQAAPQAEPPM 159
|
170
....*....|..
gi 2199891832 160 DAYDSddtDLPF 171
Cdd:PRK06863 160 DGFDD---DIPF 168
|
|
| PRK06958 |
PRK06958 |
single-stranded DNA-binding protein; Provisional |
3-134 |
2.17e-29 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 180777 [Multi-domain] Cd Length: 182 Bit Score: 106.42 E-value: 2.17e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 3 NKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFT--ANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRF 80
Cdd:PRK06958 5 NKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKdkASGEFKEATEWHRVAFFGRLAEIVGEYLKKGSSVYIEGRIRT 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2199891832 81 EQWSDQNGQNRSKHSIQVENMEMLGANNTPQ--NSGNFSNGYANYENQSYDPYAGQ 134
Cdd:PRK06958 85 RKWQGQDGQDRYSTEIVADQMQMLGGRGGSGggGGGGDEGGYGGGGGGGGGGYGGE 140
|
|
| PRK05733 |
PRK05733 |
single-stranded DNA-binding protein; Provisional |
3-171 |
5.22e-28 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 235585 [Multi-domain] Cd Length: 172 Bit Score: 102.31 E-value: 5.22e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 3 NKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFT--ANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRF 80
Cdd:PRK05733 6 NKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTdkQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIEGKLQT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 81 EQWsDQNGQNRSKHSIQVE---NMEMLGANntPQNSGNFSNGYANYENQSYDPYAGQnnfektPQKMQNSNQN---QEKI 154
Cdd:PRK05733 86 REW-EKDGIKRYTTEIVVDmqgTMQLLGGR--PQGDDQGGQGGGNYNQSAPRQQAQR------PQQAAQQQSRpapQQPA 156
|
170
....*....|....*..
gi 2199891832 155 KEIDVDaYDSDDTDLPF 171
Cdd:PRK05733 157 PQPAAD-FDSFDDDIPF 172
|
|
| PRK09010 |
PRK09010 |
single-stranded DNA-binding protein; Provisional |
3-171 |
3.22e-26 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 236362 [Multi-domain] Cd Length: 177 Bit Score: 98.00 E-value: 3.22e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 3 NKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTR--RFTANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRF 80
Cdd:PRK09010 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSEswRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 81 EQWSDQNGQNRSKHSIQVE---NMEMLGANntpQNSGNFSNGYANYENQS-----YDPyAGQNNFEKTPQKMQNSNQNQE 152
Cdd:PRK09010 87 RKWTDQSGQDRYTTEVVVNvggTMQMLGGR---QGGGAPAGGNIGGQQQGgwgqpQQP-QGGNQFSGGAQSRPQQSAPAA 162
|
170
....*....|....*....
gi 2199891832 153 KIKEIDVDAydsdDTDLPF 171
Cdd:PRK09010 163 PSNEPPMDF----DDDIPF 177
|
|
| PRK13732 |
PRK13732 |
single-stranded DNA-binding protein; Provisional |
3-171 |
2.36e-24 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 184284 [Multi-domain] Cd Length: 175 Bit Score: 93.26 E-value: 2.36e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 3 NKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTR--RFTANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRF 80
Cdd:PRK13732 7 NKVILVGRLGKDPEVRYIPNGGAVANLQVATSEswRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 81 EQWSDqNGQNRSKHSIQVE---NMEMLG----ANNTPQNSGNFSngyanyeNQSYDPYAGQNNFEKTPQKMQNSNQNQEK 153
Cdd:PRK13732 87 RSWED-NGITRYVTEILVKttgTMQMLGrapqQNAQPQPGPQQN-------GQPQSADATKKGGAKTKGRGRKAAQPEPQ 158
|
170
....*....|....*...
gi 2199891832 154 IKEIDVDAYDSDDtDLPF 171
Cdd:PRK13732 159 PQPPEGEDYGFSD-DIPF 175
|
|
| PRK07459 |
PRK07459 |
single-stranded DNA-binding protein; Provisional |
3-120 |
1.25e-23 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 180986 Cd Length: 121 Bit Score: 89.75 E-value: 1.25e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 3 NKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRftangEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRFEQ 82
Cdd:PRK07459 4 NSVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRR-----SRDDEPDWFNLEIWGKTAQVAADYVKKGSLIGITGSLKFDR 78
|
90 100 110
....*....|....*....|....*....|....*....
gi 2199891832 83 WSDQN-GQNRSKHSIQVENMEMLGANNTPQNSGNFSNGY 120
Cdd:PRK07459 79 WTDRNtGEDRSKPVIRVDRLELLGSKRDSEGNANPSNSS 117
|
|
| PRK08763 |
PRK08763 |
single-stranded DNA-binding protein; Provisional |
3-171 |
6.55e-21 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 181549 [Multi-domain] Cd Length: 164 Bit Score: 83.84 E-value: 6.55e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 3 NKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTR-RFTANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRFE 81
Cdd:PRK08763 6 NKVILVGNLGNDPDIKYTQSGMTITRISLATTSvRKDREGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGSIRYD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 82 QWSDQNGQNRSKHSIQVENMEMLGANNtpQNSGNFSNGyanyENQSYDPYAGQNNFEKTPQKMQNSNQNQEkikeidvdA 161
Cdd:PRK08763 86 KFTGQDGQERYVTEIVADEMQMLGGRG--EGGGGGGGG----IRPQRQPAPRQNNGQDYAPRRQQPAPQQS--------A 151
|
170
....*....|...
gi 2199891832 162 YDSD---DTDLPF 171
Cdd:PRK08763 152 PPMDdfaDDDIPF 164
|
|
| PRK06341 |
PRK06341 |
single-stranded DNA-binding protein; Provisional |
3-171 |
1.36e-16 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 235782 [Multi-domain] Cd Length: 166 Bit Score: 72.53 E-value: 1.36e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 3 NKVVLVGNLTRNIEMRYGQNGNAIGASAIAV--TRRFTANGEKREETCFIDISFYGR-TAEIANQYLTKGSKILIEGRLR 79
Cdd:PRK06341 6 NKVILIGNLGADPEIRRTQDGRPIANLRIATseTWRDRNSGERKEKTEWHRVVIFNEgLCKVAEQYLKKGAKVYIEGQLQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 80 FEQWSDQNGQNRSKHSIQVEN----MEMLGANNtpqNSGNFSNGYANYENQSYDPYAGQNNFEKTPQKMQNSNQNQekik 155
Cdd:PRK06341 86 TRKWTDQSGVERYSTEVVLQGfnstLTMLDGRG---EGGGGGGGGDDGGGGDFGSSGPSRGGPRPASSGGGGNFSR---- 158
|
170
....*....|....*.
gi 2199891832 156 eidvdayDSDDtDLPF 171
Cdd:PRK06341 159 -------DMDD-DIPF 166
|
|
| PRK07275 |
PRK07275 |
single-stranded DNA-binding protein; Provisional |
1-171 |
7.66e-16 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 180915 [Multi-domain] Cd Length: 162 Bit Score: 70.69 E-value: 7.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 1 MFNKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRF-TANGEKreETCFIDISFYGRTAEIANQYLTKGSKILIEGRLR 79
Cdd:PRK07275 1 MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFkSQNGER--EADFINCVIWRQQAENLANWAKKGALIGVTGRIQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 80 FEQWSDQNGQNRSKHSIQVENMEMLGANNT--PQNSGNFSNGYANY--ENQSYDPYAGQNNFEKTPQKMQNSNqnqekik 155
Cdd:PRK07275 79 TRNYENQQGQRVYVTEVVADNFQMLESRATreGGSGGSYNGGFNNApsANSYSAPAQQTPNFGRDESPFGNSN------- 151
|
170
....*....|....*.
gi 2199891832 156 eidvdAYDSDDTDLPF 171
Cdd:PRK07275 152 -----PMDISDDDLPF 162
|
|
| PRK06751 |
PRK06751 |
single-stranded DNA-binding protein; Provisional |
1-171 |
3.71e-15 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 168659 [Multi-domain] Cd Length: 173 Bit Score: 69.06 E-value: 3.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 1 MFNKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFTaNGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRF 80
Cdd:PRK06751 1 MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFA-NQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 81 EQWSDQNGQNRSKHSIQVENMEMLgannTPQNSGNFSNGY-------ANYENQSYDPYaGQNNFEKTPQKMQNS--NQNQ 151
Cdd:PRK06751 80 RNYEGQDGKRVYVTEVLAESVQFL----EPRNGGGEQRGSfnqqpsgAGFGNQSSNPF-GQSSNSGNQGNQGNSgfTKND 154
|
170 180
....*....|....*....|
gi 2199891832 152 EKIKEIDvDAYDSDDTDLPF 171
Cdd:PRK06751 155 DPFSNVG-QPIDISDDDLPF 173
|
|
| PRK07274 |
PRK07274 |
single-stranded DNA-binding protein; Provisional |
1-90 |
5.95e-15 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 180914 Cd Length: 131 Bit Score: 67.48 E-value: 5.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 1 MFNKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRF-TANGEKreETCFIDISFYGRTAEIANQYLTKGSKILIEGRLR 79
Cdd:PRK07274 1 MYNKVILIGRLTATPELVKTANDKSVARVTLAVNRRFkNQNGER--EADFINVVLWGKLAETLASYASKGSLISIDGELR 78
|
90
....*....|.
gi 2199891832 80 FEQWsDQNGQN 90
Cdd:PRK07274 79 TRKY-EKDGQT 88
|
|
| PRK06642 |
PRK06642 |
single-stranded DNA-binding protein; Provisional |
2-129 |
1.55e-14 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 135984 Cd Length: 152 Bit Score: 67.05 E-value: 1.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 2 FNKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFT--ANGEKREETCFIDISFYGR-TAEIANQYLTKGSKILIEGRL 78
Cdd:PRK06642 5 LNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKdrITSERKERTEWHRVVIFSEgLVSVVERYVTKGSKLYIEGSL 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2199891832 79 RFEQWSDQNGQNRSKHSIQVEN-------MEMLGANNTPQNSGNFSNGYANYENQSYD 129
Cdd:PRK06642 85 QTRKWNDNSGQEKYTTEVVLQNfnsqlilLDSKNSNNHNQDSGHSEYKHPETKNHSFD 142
|
|
| PRK06752 |
PRK06752 |
single-stranded DNA-binding protein; Validated |
1-104 |
2.11e-12 |
|
single-stranded DNA-binding protein; Validated
Pssm-ID: 168660 Cd Length: 112 Bit Score: 60.43 E-value: 2.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 1 MFNKVVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFTaNGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRF 80
Cdd:PRK06752 1 MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFR-NSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHT 79
|
90 100
....*....|....*....|....
gi 2199891832 81 EQWSDQNGQNRSKHSIQVENMEML 104
Cdd:PRK06752 80 RNYEDDQGKRIYITEVVIESITFL 103
|
|
| PRK07772 |
PRK07772 |
single-stranded DNA-binding protein; Provisional |
5-99 |
1.31e-10 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 236092 [Multi-domain] Cd Length: 186 Bit Score: 57.35 E-value: 1.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 5 VVLVGNLTRNIEMRYGQNGNAIGASAIAVT-RRF--TANGEKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRFE 81
Cdd:PRK07772 7 ITVVGNLTADPELRFTPSGAAVANFTVASTpRTFdrQTNEWKDGEALFLRCSIWRQAAENVAESLTKGMRVIVTGRLKQR 86
|
90
....*....|....*...
gi 2199891832 82 QWSDQNGQNRSKHSIQVE 99
Cdd:PRK07772 87 SYETREGEKRTVVELEVD 104
|
|
| PRK06293 |
PRK06293 |
single-stranded DNA-binding protein; Provisional |
5-171 |
2.61e-06 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 180517 [Multi-domain] Cd Length: 161 Bit Score: 44.89 E-value: 2.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 5 VVLVGNLTRNIEMRYGQNGNAIGASAIAVTRRFTangeKREETCFIDISFYGRTAEIANQYLTKGSKILIEGRLRFEQWS 84
Cdd:PRK06293 4 GYIVGRLGADPEERMTSKGKRVVVLRLGVKSRVG----SKDETVWCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPESYV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199891832 85 DQNGQNRSKHSIQVENMEMLGANNtpqNSGNFSNGYANYENQ--SYDPYAGqnNFEktpqkmqNSNQNQEKIKEIDVDAY 162
Cdd:PRK06293 80 DKDGSPQSSLVVSVDTIKFSPFGR---NEGSRQPSAGEDEGQqrGYDNVSI--GFE-------GESLDTESALDKDMYAG 147
|
170
....*....|....
gi 2199891832 163 DSDDT-----DLPF 171
Cdd:PRK06293 148 YGQDQqyaseDVPF 161
|
|
| PRK08182 |
PRK08182 |
single-stranded DNA-binding protein; Provisional |
52-99 |
4.50e-03 |
|
single-stranded DNA-binding protein; Provisional
Pssm-ID: 169261 Cd Length: 148 Bit Score: 35.81 E-value: 4.50e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 2199891832 52 ISFYGRTAEIANQYLTKGSKILIEGRLRFEQWSDQNGQNRSkhSIQVE 99
Cdd:PRK08182 58 VELWHRDAEHWARLYQKGMRVLVEGRMERDEWTDNEDNERV--TFKVE 103
|
|
| |
