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Conserved domains on  [gi|2199933175|ref|WP_239857775|]
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flagellar motor stator protein MotA [Laribacter hongkongensis]

Protein Classification

flagellar motor stator protein MotA( domain architecture ID 10013143)

motility protein A (MotA) is a flagellar motor stator protein which is energized by a proton (H(+)) motive force

Gene Symbol:  motA
Gene Ontology:  GO:0120101|GO:1902600|GO:0006935
PubMed:  6090403|32931735

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09110 PRK09110
flagellar motor stator protein MotA;
1-282 1.22e-169

flagellar motor stator protein MotA;


:

Pssm-ID: 181655 [Multi-domain]  Cd Length: 283  Bit Score: 470.42  E-value: 1.22e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   1 MFVIIGYILVLGSVIGGFMMAGGHVAALLQPNELVIIFGAGTGAFLAANGGAPLRATMKALPQLFKGDKYNKALYMELFA 80
Cdd:PRK09110    1 MLIIIGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175  81 LLFEVLTKVRKEGLMSIEADVDAPQESPIFSKYPVIVNDHHVIDFICDYLRLMVGGNLNPFEIENLMDIEIETHHHEGSV 160
Cdd:PRK09110   81 LLYELLRKARQEGMMALEAHIENPEESPIFAKYPKILKDHHLVDFICDYLRLMISGNMNPHEIEALMDEEIETHHHEAEV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175 161 PVGALAKMADGLPAFGIVAAVMGVVHTMESVGIPPAELGKLIAAALVGTFLGILLSYGFIGPLSNRLEYKVNDVTRVLTT 240
Cdd:PRK09110  161 PAHALQKVADALPAFGIVAAVLGVVKTMGSIDQPPAVLGALIGAALVGTFLGILLAYGFVGPLAARLEQVVEEDTKMYQC 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 2199933175 241 IKVTLLASLNGYAPQVAVEFGRKALYGVDRPGFLELEEHVKS 282
Cdd:PRK09110  241 IKVTLLASLNGYAPQIAVEFGRKTLPSTERPSFAELEEHVRG 282
 
Name Accession Description Interval E-value
PRK09110 PRK09110
flagellar motor stator protein MotA;
1-282 1.22e-169

flagellar motor stator protein MotA;


Pssm-ID: 181655 [Multi-domain]  Cd Length: 283  Bit Score: 470.42  E-value: 1.22e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   1 MFVIIGYILVLGSVIGGFMMAGGHVAALLQPNELVIIFGAGTGAFLAANGGAPLRATMKALPQLFKGDKYNKALYMELFA 80
Cdd:PRK09110    1 MLIIIGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175  81 LLFEVLTKVRKEGLMSIEADVDAPQESPIFSKYPVIVNDHHVIDFICDYLRLMVGGNLNPFEIENLMDIEIETHHHEGSV 160
Cdd:PRK09110   81 LLYELLRKARQEGMMALEAHIENPEESPIFAKYPKILKDHHLVDFICDYLRLMISGNMNPHEIEALMDEEIETHHHEAEV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175 161 PVGALAKMADGLPAFGIVAAVMGVVHTMESVGIPPAELGKLIAAALVGTFLGILLSYGFIGPLSNRLEYKVNDVTRVLTT 240
Cdd:PRK09110  161 PAHALQKVADALPAFGIVAAVLGVVKTMGSIDQPPAVLGALIGAALVGTFLGILLAYGFVGPLAARLEQVVEEDTKMYQC 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 2199933175 241 IKVTLLASLNGYAPQVAVEFGRKALYGVDRPGFLELEEHVKS 282
Cdd:PRK09110  241 IKVTLLASLNGYAPQIAVEFGRKTLPSTERPSFAELEEHVRG 282
MotA1 TIGR03818
flagellar motor stator protein MotA; The MotA protein, along with its partner MotB, comprise ...
 1-282 7.46e-161

flagellar motor stator protein MotA; The MotA protein, along with its partner MotB, comprise the stator complex of the bacterial flagellar motor. MotAB span the cytoplasmic membrane and undergo conformational changes powered by the translocation of protons. These conformational changes in turn are communicated to the rotor assembly, producing torque. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.


Pssm-ID: 274801 [Multi-domain]  Cd Length: 282  Bit Score: 448.50  E-value: 7.46e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   1 MFVIIGYILVLGSVIGGFMMAGGHVAALLQPNELVIIFGAGTGAFLAANGGAPLRATMKALPQLFKGDKYNKALYMELFA 80
Cdd:TIGR03818   1 MLKIIGLVVVLGSVFGGYALAGGHLAALWQPAELLIIGGAALGAFIIANPPKVLKETLKGLPAVFKGSKYGKADYLDLLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175  81 LLFEVLTKVRKEGLMSIEADVDAPQESPIFSKYPVIVNDHHVIDFICDYLRLMVGGNLNPFEIENLMDIEIETHHHEGSV 160
Cdd:TIGR03818  81 LLYELLRKARREGLMAIESHIENPEESSIFSKYPKILKDHHLVEFICDYLRLMVMGNMNPHELEALMEEEIETHHHELLK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175 161 PVGALAKMADGLPAFGIVAAVMGVVHTMESVGIPPAELGKLIAAALVGTFLGILLSYGFIGPLSNRLEYKVNDVTRVLTT 240
Cdd:TIGR03818 161 PAHALQKVADALPGFGIVAAVLGVVITMGSIDGPPEVLGHHIAAALVGTFLGILLCYGFVGPLAAALEQRVEEEIKFLEC 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 2199933175 241 IKVTLLASLNGYAPQVAVEFGRKALYGVDRPGFLELEEHVKS 282
Cdd:TIGR03818 241 VKVVLVAFLNGYAPQLAVEFGRKVIPSDVRPSFAELEEWVRG 282
MotA COG1291
Flagellar motor component MotA [Cell motility];
1-275 4.39e-99

Flagellar motor component MotA [Cell motility];


Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 290.82  E-value: 4.39e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   1 MFVIIGYILVLGSVIGGFMMAGGHVAALLQPNELVIIFGAGTGAFLAANGGAPLRATMKALPQLFKGDKYNkalYMELFA 80
Cdd:COG1291     1 MATIIGLVVGLGAVLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGKKAD---YEELIE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175  81 LLFEVLTKVRKEGLMSIEADVDApqespifskypviVNDhhviDFICDYLRLMVGGnLNPFEIENLMDIEIETHHHEGSV 160
Cdd:COG1291    78 LLVELAEKARKEGLLALESDIEE-------------IDD----PFLRDGLRLVVDG-TDPEEIRELLETEIEAMEERHEA 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175 161 PVGALAKMADGLPAFGIVAAVMGVVHTMESVGIPpAELGKLIAAALVGTFLGILLSYGFIGPLSNRLEYKVNDVTRVLTT 240
Cdd:COG1291   140 GAKVFEAMGDYAPAFGIIGTVLGLIQMLGNLDDP-SALGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREM 218

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2199933175 241 IKVTLLASLNGYAPQVAVEFGRKALYGVDRPGFLE 275
Cdd:COG1291   219 IIEGLLAIQAGENPRIIEEKLRSFLPPSERPSFEE 253
MotA_N pfam20560
Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein ...
 4-93 8.43e-39

Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein A (MotA). MotA is a membrane protein that forms the stator element of the flagellar motor complex together with MotB with 5:2 stoichiometry, which couples ion flow across the cytoplasmic membrane to generate torque, and thus, it is required for rotation of the flagellar motor. This domain contains conserved torque-generating charged residues at the C-terminal and is adjacent pfam01618, which represents MotA TMH3 and TMH4.


Pssm-ID: 466709 [Multi-domain]  Cd Length: 91  Bit Score: 131.36  E-value: 8.43e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   4 IIGYILVLGSVIGGFMMAGGHVAALLQ-PNELVIIFGAGTGAFLAANGGAPLRATMKALPQLFKGDKYNKALYMELFALL 82
Cdd:pfam20560   1 IIGIVVVLGCVFGGYALAGGHLGVLWQlPFELLIIGGAAIGAFIIANPMKVLKATLKALPKAFKGSKYKKADYLDLLALL 80

                          90
                  ....*....|.
gi 2199933175  83 FEVLTKVRKEG 93
Cdd:pfam20560  81 YELLRKARKEG 91
 
Name Accession Description Interval E-value
PRK09110 PRK09110
flagellar motor stator protein MotA;
1-282 1.22e-169

flagellar motor stator protein MotA;


Pssm-ID: 181655 [Multi-domain]  Cd Length: 283  Bit Score: 470.42  E-value: 1.22e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   1 MFVIIGYILVLGSVIGGFMMAGGHVAALLQPNELVIIFGAGTGAFLAANGGAPLRATMKALPQLFKGDKYNKALYMELFA 80
Cdd:PRK09110    1 MLIIIGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175  81 LLFEVLTKVRKEGLMSIEADVDAPQESPIFSKYPVIVNDHHVIDFICDYLRLMVGGNLNPFEIENLMDIEIETHHHEGSV 160
Cdd:PRK09110   81 LLYELLRKARQEGMMALEAHIENPEESPIFAKYPKILKDHHLVDFICDYLRLMISGNMNPHEIEALMDEEIETHHHEAEV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175 161 PVGALAKMADGLPAFGIVAAVMGVVHTMESVGIPPAELGKLIAAALVGTFLGILLSYGFIGPLSNRLEYKVNDVTRVLTT 240
Cdd:PRK09110  161 PAHALQKVADALPAFGIVAAVLGVVKTMGSIDQPPAVLGALIGAALVGTFLGILLAYGFVGPLAARLEQVVEEDTKMYQC 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 2199933175 241 IKVTLLASLNGYAPQVAVEFGRKALYGVDRPGFLELEEHVKS 282
Cdd:PRK09110  241 IKVTLLASLNGYAPQIAVEFGRKTLPSTERPSFAELEEHVRG 282
MotA1 TIGR03818
flagellar motor stator protein MotA; The MotA protein, along with its partner MotB, comprise ...
 1-282 7.46e-161

flagellar motor stator protein MotA; The MotA protein, along with its partner MotB, comprise the stator complex of the bacterial flagellar motor. MotAB span the cytoplasmic membrane and undergo conformational changes powered by the translocation of protons. These conformational changes in turn are communicated to the rotor assembly, producing torque. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.


Pssm-ID: 274801 [Multi-domain]  Cd Length: 282  Bit Score: 448.50  E-value: 7.46e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   1 MFVIIGYILVLGSVIGGFMMAGGHVAALLQPNELVIIFGAGTGAFLAANGGAPLRATMKALPQLFKGDKYNKALYMELFA 80
Cdd:TIGR03818   1 MLKIIGLVVVLGSVFGGYALAGGHLAALWQPAELLIIGGAALGAFIIANPPKVLKETLKGLPAVFKGSKYGKADYLDLLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175  81 LLFEVLTKVRKEGLMSIEADVDAPQESPIFSKYPVIVNDHHVIDFICDYLRLMVGGNLNPFEIENLMDIEIETHHHEGSV 160
Cdd:TIGR03818  81 LLYELLRKARREGLMAIESHIENPEESSIFSKYPKILKDHHLVEFICDYLRLMVMGNMNPHELEALMEEEIETHHHELLK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175 161 PVGALAKMADGLPAFGIVAAVMGVVHTMESVGIPPAELGKLIAAALVGTFLGILLSYGFIGPLSNRLEYKVNDVTRVLTT 240
Cdd:TIGR03818 161 PAHALQKVADALPGFGIVAAVLGVVITMGSIDGPPEVLGHHIAAALVGTFLGILLCYGFVGPLAAALEQRVEEEIKFLEC 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 2199933175 241 IKVTLLASLNGYAPQVAVEFGRKALYGVDRPGFLELEEHVKS 282
Cdd:TIGR03818 241 VKVVLVAFLNGYAPQLAVEFGRKVIPSDVRPSFAELEEWVRG 282
MotA COG1291
Flagellar motor component MotA [Cell motility];
1-275 4.39e-99

Flagellar motor component MotA [Cell motility];


Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 290.82  E-value: 4.39e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   1 MFVIIGYILVLGSVIGGFMMAGGHVAALLQPNELVIIFGAGTGAFLAANGGAPLRATMKALPQLFKGDKYNkalYMELFA 80
Cdd:COG1291     1 MATIIGLVVGLGAVLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGKKAD---YEELIE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175  81 LLFEVLTKVRKEGLMSIEADVDApqespifskypviVNDhhviDFICDYLRLMVGGnLNPFEIENLMDIEIETHHHEGSV 160
Cdd:COG1291    78 LLVELAEKARKEGLLALESDIEE-------------IDD----PFLRDGLRLVVDG-TDPEEIRELLETEIEAMEERHEA 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175 161 PVGALAKMADGLPAFGIVAAVMGVVHTMESVGIPpAELGKLIAAALVGTFLGILLSYGFIGPLSNRLEYKVNDVTRVLTT 240
Cdd:COG1291   140 GAKVFEAMGDYAPAFGIIGTVLGLIQMLGNLDDP-SALGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREM 218

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2199933175 241 IKVTLLASLNGYAPQVAVEFGRKALYGVDRPGFLE 275
Cdd:COG1291   219 IIEGLLAIQAGENPRIIEEKLRSFLPPSERPSFEE 253
PRK12482 PRK12482
flagellar motor stator protein MotA;
1-277 3.16e-68

flagellar motor stator protein MotA;


Pssm-ID: 171532 [Multi-domain]  Cd Length: 287  Bit Score: 213.46  E-value: 3.16e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   1 MFVIIGYILVLGSVIGGFMMAGGHVAALLQPNELVIIFGAGTGAFLAANGGAPLRATMKALPQLFKGDKYNKALYMELFA 80
Cdd:PRK12482    1 MQKLFGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGIGAMILGNPKSVLKEMWHQIKGVIRRKEYGVEFQRQLLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175  81 LLFEVLTKVRKEGLMSIEADVDAPQESPIFSKYPVIVNDHHVIDFICDYLRLMVGGNLNPFEIENLMDIEIETHHHEGSV 160
Cdd:PRK12482   81 LLYELLEMVQEGGLKRLDQHIEIPEESSLFQKYPLILQQKRLITFISDNFRLMAMGKINQHELEGILDQELDAVEEELLQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175 161 PVGALAKMADGLPAFGIVAAVMGVVHTMESVGIPPAELGKLIAAALVGTFLGILLSYGFIGPLSNRLEYKVNDVTRVLTT 240
Cdd:PRK12482  161 PSRSLQRIAEAMPGFGICAAVLGIIITMQSIDGSIAEIGLKVAAALVGTFLGVFICYCLMDPLANAMEQEIKKELSLLEC 240

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 2199933175 241 IKVTLLASLNGYAPQVAVEFGRKALYGVDRPGFLELE 277
Cdd:PRK12482  241 VRTVLVAHVAGKPTLLAVDAGRKLLPLDNKPTFATLD 277
MotA_N pfam20560
Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein ...
 4-93 8.43e-39

Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein A (MotA). MotA is a membrane protein that forms the stator element of the flagellar motor complex together with MotB with 5:2 stoichiometry, which couples ion flow across the cytoplasmic membrane to generate torque, and thus, it is required for rotation of the flagellar motor. This domain contains conserved torque-generating charged residues at the C-terminal and is adjacent pfam01618, which represents MotA TMH3 and TMH4.


Pssm-ID: 466709 [Multi-domain]  Cd Length: 91  Bit Score: 131.36  E-value: 8.43e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   4 IIGYILVLGSVIGGFMMAGGHVAALLQ-PNELVIIFGAGTGAFLAANGGAPLRATMKALPQLFKGDKYNKALYMELFALL 82
Cdd:pfam20560   1 IIGIVVVLGCVFGGYALAGGHLGVLWQlPFELLIIGGAAIGAFIIANPMKVLKATLKALPKAFKGSKYKKADYLDLLALL 80

                          90
                  ....*....|.
gi 2199933175  83 FEVLTKVRKEG 93
Cdd:pfam20560  81 YELLRKARKEG 91
motC PRK09109
flagellar motor protein; Reviewed
 4-236 5.34e-20

flagellar motor protein; Reviewed


Pssm-ID: 181654 [Multi-domain]  Cd Length: 246  Bit Score: 86.54  E-value: 5.34e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   4 IIGYILVLGSVIGGFMMAGGHVAALLQPNELVIIFGAGTGAFLAANGGAPLRATMKALPQLFKGDKYNKAlymELFALLF 83
Cdd:PRK09109    6 LIGLILAFVAIIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVFKRAFKILRWVFFPPRSDLE---GGIDRIV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175  84 EVLTKVRKEGLMSIEADVDAPQESpifskypvivndhhvidFICDYLRLMVGGNlNPFEIENLMDIEIETHHHEGSVPVG 163
Cdd:PRK09109   83 EWSNTARKEGLLGLEDVADREPDP-----------------FARKGLQLLVDGA-EPESIRSVLEVEIDTQEHRDLQAAK 144

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2199933175 164 ALAKMADGLPAFGIVAAVMGVVHTMESVGiPPAELGKLIAAALVGTFLGILLSYGFIGPLSNRLEYKVNDVTR 236
Cdd:PRK09109  145 VFESMGGYAPTIGIIGAVMGLIHVMENLA-DPSQLGSGIAVAFVATIYGVASANLLFLPVANKLKSIIHRQSR 216
PRK08124 PRK08124
flagellar motor protein MotA; Validated
 2-256 5.44e-19

flagellar motor protein MotA; Validated


Pssm-ID: 181238 [Multi-domain]  Cd Length: 263  Bit Score: 84.24  E-value: 5.44e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   2 FVIIGYILVLGSVIGGFMMAGGHVAALLQPNELVIIFGAGTGAFLAANGGAPLRATMKALPQLFKGDKynKALYMELFAL 81
Cdd:PRK08124    4 TTIIGLILGLIAVVVGMVVKGASLAVLLNPAAILIIIVGTIAAVMIAFPMSELKKVPKLFKVLFKEKK--DPSKEELIEQ 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175  82 LFEVLTKVRKEGLMSIEADVDApqespifskypviVNDhhviDFICDYLRLMVGGNLNPFeIENLMDIEIET---HHHEG 158
Cdd:PRK08124   82 FVEWASESRREGLLALEAQLDE-------------IDD----PFLKRGLKMVIDGQSPEF-IRDVLEEEIEAmeeRHAAG 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175 159 SvpvGALAKMADGLPAFGIVAAVMGVVHTMESVGiPPAELGKLIAAALVGTFLGILLSYGFIGPLSNRLEYKVNDVTRVL 238
Cdd:PRK08124  144 A---AIFTQAGTYAPTLGVLGAVIGLIAALGNLS-DIEKLGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKEEIELK 219

                         250
                  ....*....|....*...
gi 2199933175 239 TTIKVTLLASLNGYAPQV 256
Cdd:PRK08124  220 YIIIEGVLAIQEGNAPRV 237
PRK08456 PRK08456
flagellar motor protein MotA; Validated
 3-254 3.92e-18

flagellar motor protein MotA; Validated


Pssm-ID: 181434 [Multi-domain]  Cd Length: 257  Bit Score: 81.70  E-value: 3.92e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   3 VIIGYILVLGSVIGGFMMAGGHVAALLQPNELVIIFGagTGAFLAANGGAP--LRATMKALPQLFKGDKYNkalYMELFA 80
Cdd:PRK08456    5 TILGMVLAVASISVGDILEGGNPLHVIHLSSFIIVVP--TALFAAMTATHKkyVKAAYKELKIVFKNPGVN---LNERIK 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175  81 LLFEVLTKVRKEGLMSIEADVDApqespifskypviVNDhhviDFICDYLRLMVGGnLNPFEIENLMDIEIET--HHHEG 158
Cdd:PRK08456   80 QLVELATLARKDGVLALEGRVAQ-------------IED----EFLKNGLSMLVDG-KDLEEIKESMEIQIEEmeEYYHG 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175 159 SVPVGALAkmADGLPAFGIVAAVMGVVHTMESVGiPPAELGKLIAAALVGTFLGILLSYGFIGPLSNRLEYKVNDVTRVL 238
Cdd:PRK08456  142 AAHYWITA--GETCPTMGLVGAVMGLMLALQKLD-NPAEMAAGIAGAFTATVTGIMGSYALFGPWGHKLKAKSKDIIKEK 218

                         250
                  ....*....|....*.
gi 2199933175 239 TTIKVTLLASLNGYAP 254
Cdd:PRK08456  219 TVILEGILGIAEGANP 234
PRK06926 PRK06926
flagellar motor protein MotP; Reviewed
 3-230 8.27e-10

flagellar motor protein MotP; Reviewed


Pssm-ID: 180755 [Multi-domain]  Cd Length: 271  Bit Score: 58.19  E-value: 8.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   3 VIIGYILVLGSVIGGFMMAGghVAALLQPNELVIIFGAGTGAFLAANGGAPLRATMKALPQLFKGDKYNKALYMELFALL 82
Cdd:PRK06926   12 IFLGITIVVLGVISNSGLSG--FLSFIDLTSILIVTGGLCAALFISFSPKDLKLAPRVLKQAFQSQEDDVEELVQTFVSL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175  83 FEvltKVRKEGLMSIEADVDAPQESpifskypvivndhhvidFICDYLRLMVGGnLNPFEIENLMDIEI---ETHHHEGS 159
Cdd:PRK06926   90 SE---KARREGLLSLEAELEEVKDP-----------------FIKKGLLLAIDG-WEPETIRDIMMAEIaamEERHRKGR 148

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2199933175 160 vpvGALAKMADGLPAFGIVAAVMGVVHTMESVGiPPAELGKLIAAALVGTFLGILLSYGFIGPLSNRLEYK 230
Cdd:PRK06926  149 ---RIFEKAGEYAPAWGMIGTLVGLVLMLKNLN-DPSTLGPNMAIALLTTLYGTLLANLVFLPIAAKLEEK 215
MotA_ExbB pfam01618
MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins ...
 125-235 2.69e-07

MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.


Pssm-ID: 460268  Cd Length: 120  Bit Score: 48.24  E-value: 2.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175 125 FICDYLRLMVGGNlNPFEIENLMDIEI--ETHHHEGSVPVgaLAKMADGLPAFGIVAAVMGVVHTMESVGIPPAELGKL- 201
Cdd:pfam01618   9 FLKKGLQLVVDGT-DPEEIRRALEEAIdrEEERLERGLSI--LATIGSLAPLLGLLGTVLGLIHAFQNLGDAGPGLSALa 85

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2199933175 202 --IAAALVGTFLGILLSYGFIgPLSNRLEYKVNDVT 235
Cdd:pfam01618  86 pgIAEALIATAYGLFVAIPAL-PFYNKLKRRSEREV 120
PRK06743 PRK06743
flagellar motor protein MotP; Reviewed
 5-234 1.29e-06

flagellar motor protein MotP; Reviewed


Pssm-ID: 136027  Cd Length: 254  Bit Score: 48.43  E-value: 1.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175   5 IGYILVLGSVIGGFMMAGGHVAAL---LQPNELVIIFGAGTGAFLAANGGAPLRATMKALPQLFKGDKYNKALYMELFAl 81
Cdd:PRK06743    1 VGIIVGFAIVIAAIMLGGGGIKAFknfLDVSSILIVIGGTTATIVVAYRFGEIKKYTKSIFTVLHRREEDLEQLTDLFV- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199933175  82 lfEVLTKVRKEGLMSIEAD---VDAPqespifskypvivndhhvidFICDYLRLMVGGnLNPFEIENLMDIEIETHHHEG 158
Cdd:PRK06743   80 --DFSKKSKKHGLLSLEVDgeqVDNP--------------------FIQKGIRLMLSG-YDEDELKEVLMKDVETEVYEL 136

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2199933175 159 SVPVGALAKMADGLPAFGIVAAVMGVVHTMESVGiPPAELGKLIAAALVGTFLGILLSYGFIGPLSNRLEYKVNDV 234
Cdd:PRK06743  137 RKGAALLDKIGDFAPAWGMIGTLIGLIIMLQNLQ-DTSQIGTGMAVAMLTTLYGSVLANMIAIPLAEKVYRGIEDL 211
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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