|
Name |
Accession |
Description |
Interval |
E-value |
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
27-437 |
1.91e-108 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 326.54 E-value: 1.91e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 27 VLEQVGWRCTQCADLRKADALFSETGPCIGIVDLSHDEfsLNGIAnlvsthkqvrWLAFIRESQL-----------SSDT 95
Cdd:COG2204 21 LLERAGYEVETAASGEEALALLREEPPDLVLLDLRMPG--MDGLE----------LLRELRALDPdlpvilltgygDVET 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 96 ICQFIVNFCIDFFTAPIPDAQLLGTIGHQLGMLKLEKKVWPhygsnnDMGLIGESIPMKRLRDQIKRIGPTDVSILIYGE 175
Cdd:COG2204 89 AVEAIKAGAFDYLTKPFDLEELLAAVERALERRRLRRENAE------DSGLIGRSPAMQEVRRLIEKVAPSDATVLITGE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 176 SGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINRD-----DVSEPSILEKANGGTILLNDILTLPKSQQ 250
Cdd:COG2204 163 SGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGHEKGaftgaVARRIGKFELADGGTLFLDEIGEMPLALQ 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 251 LNLLRFLQEGTIETINGRQE--VDVRILAANSADIEKALIDGDFNEELYHYINVLRINVPSLKERAGDIAILARHFLQEY 328
Cdd:COG2204 243 AKLLRVLQEREFERVGGNKPipVDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARF 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 329 SKEYNAQARsYTEEATRALTRYHWPGNVRELMNQIKRIVLMSETVMLDEQHLDLPkrsdgkrslksiRERSERDALLLVL 408
Cdd:COG2204 323 AAELGKPVK-LSPEALEALLAYDWPGNVRELENVIERAVILADGEVITAEDLPEA------------LEEVERELIERAL 389
|
410 420
....*....|....*....|....*....
gi 2199944867 409 ESHSGQVSMAAKELGVSRATMYRLLNKHN 437
Cdd:COG2204 390 EETGGNVSRAAELLGISRRTLYRKLKKYG 418
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
106-438 |
3.62e-93 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 288.57 E-value: 3.62e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 106 DFFTAPIpDAQLLG-TIGHQLGMLKLE---KKVWPHYGSNNDMGLIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKE 181
Cdd:TIGR02915 98 DFYQKPI-DPDVLKlIVDRAFHLYTLEtenRRLQSALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKE 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 182 TVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINRDDVS-----EPSILEKANGGTILLNDILTLPKSQQLNLLRF 256
Cdd:TIGR02915 177 VLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTgavkqTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRF 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 257 LQEGTIETINGRQE--VDVRILAANSADIEKALIDGDFNEELYHYINVLRINVPSLKERAGDIAILARHFLQEYSKEYNA 334
Cdd:TIGR02915 257 LQERVIERLGGREEipVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKR 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 335 QARSYTEEATRALTRYHWPGNVRELMNQIKRIVLMSETVMLDEQHLDLPKRSDGKR----SLKSIRERSERDALLLVLES 410
Cdd:TIGR02915 337 KTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQITAEDLGLDARERAETplevNLREVRERAEREAVRKAIAR 416
|
330 340
....*....|....*....|....*...
gi 2199944867 411 HSGQVSMAAKELGVSRATMYRLLNKHNL 438
Cdd:TIGR02915 417 VDGNIARAAELLGITRPTLYDLMKKHGI 444
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
146-432 |
1.20e-68 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 226.59 E-value: 1.20e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 146 LIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFG-------- 217
Cdd:PRK05022 189 MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGhvkgaftg 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 218 --INRddvsePSILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQE--VDVRILAANSADIEKALIDGDFN 293
Cdd:PRK05022 269 aiSNR-----SGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSlrVDVRVIAATNRDLREEVRAGRFR 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 294 EELYHYINVLRINVPSLKERAGDIAILARHFLQEYSKEYNAQARSYTEEATRALTRYHWPGNVRELMNQIKRIVLM---- 369
Cdd:PRK05022 344 ADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLarar 423
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2199944867 370 --SETVMLDEQHLDLPKRSD-------------GKRSLKSIRERSERDALLLVLESHSGQVSMAAKELGVSRATMYRL 432
Cdd:PRK05022 424 gaGRIVTLEAQHLDLPAEVAlpppeaaaapaavVSQNLREATEAFQRQLIRQALAQHQGNWAAAARALELDRANLHRL 501
|
|
| VpsR |
pfam20161 |
VpsR domain; VpsR appears superficially to be a response regulator, based on extension of its ... |
4-122 |
1.17e-66 |
|
VpsR domain; VpsR appears superficially to be a response regulator, based on extension of its alignment to response regulators AlgB and NrtC all the way to the N-terminus. Instead of being a response regulator with a histidine kinase partner, the sigma-54-dependent transcription factor VpsR directly binds to cyclic-di-GMP. Its regulon includes genes for the biosynthesis of the biofilm matrix component called Vibrio polysaccharide (VPS).
Pssm-ID: 437993 Cd Length: 121 Bit Score: 208.65 E-value: 1.17e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 4 QFRMDSIPGSLVVVGGTYEPWLSVLEQVGWRCTQCADLRKADALFSETGPCIGIVDLSHDEFSLNGIANLVSTHKQVRWL 83
Cdd:pfam20161 3 QCKADSVPRTLLVVGGPDESWLALLEQAGWQCHRCYDLREAERLLLEIGPCVGLVDLSHDDFSLQGLAALVNRHKQVRWI 82
|
90 100 110
....*....|....*....|....*....|....*....
gi 2199944867 84 AFIRESQLSSDTICQFIVNFCIDFFTAPIPDAQLLGTIG 122
Cdd:pfam20161 83 ALIRPEQLDDDAICQFIVDFCIDYFTSPIPDARLLFTIG 121
|
|
| Regu_Geo_Pelo |
NF038230 |
GPMC system transcriptional regulator; Members of this family are family are sigma ... |
169-359 |
1.14e-23 |
|
GPMC system transcriptional regulator; Members of this family are family are sigma 54-interacting transcriptional regulators of the GPMC (Geobacter/Pelobacter Mystery Cassette) system, in which the most distinctive signature is the TIGR04442 protein family.
Pssm-ID: 468419 [Multi-domain] Cd Length: 935 Bit Score: 104.37 E-value: 1.14e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 169 SILIYGESGTGKETVARAVHKTSSRAQKEFIS---------VNCRAMSERRLESDLFGINRDDVSEPS-----ILEKANG 234
Cdd:NF038230 593 SILITGETGSGKEFLFNNLYSRLNEMYREQLNprgelpvkkTNIAAYSGELTYSELFGHKRGAFTGAHadrkgILEEAHG 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 235 GTILLNDILTL-PKSQqLNLLRFLQEGTIETINGRQEVDVRIL--AANSADIEKALIDGDFNEELYHYINVLRINVPSLK 311
Cdd:NF038230 673 GVVFLDEIGDAdPKTQ-VQLLRFLDNGGFVRLGENQTRFSRVLlvAATNKDLRQLIAEGLFREDLYHRLSELTIEVPSLN 751
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2199944867 312 ERAGDIAILARHFL----QEYSK--EYNAQARSYTEEATRALTRYHWPGNVREL 359
Cdd:NF038230 752 ERREDIPDLAVHFLgklyRVYRGpeETEEDPPILSEDAKQLLVQHHYTGNIREL 805
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
153-309 |
8.25e-16 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 74.49 E-value: 8.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 153 MKRLRDQIKRI--GPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINRDDVSEpSILE 230
Cdd:cd00009 3 QEEAIEALREAleLPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLF-ELAE 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2199944867 231 KANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRqevDVRILAANSADiekalIDGDFNEELYHYINvLRINVPS 309
Cdd:cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRE---NVRVIGATNRP-----LLGDLDRALYDRLD-IRIVIPL 151
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
169-298 |
3.93e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 52.38 E-value: 3.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 169 SILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINRDDVSEPS----------ILEKANGGTIL 238
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSgelrlrlalaLARKLKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2199944867 239 LNDILTLPKSQQLNLLRFLQEGTIETINgRQEVDVRILAAN--SADIEKALIDGDFNEELYH 298
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEELRLLLLL-KSEKNLTVILTTndEKDLGPALLRRRFDRRIVL 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
27-437 |
1.91e-108 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 326.54 E-value: 1.91e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 27 VLEQVGWRCTQCADLRKADALFSETGPCIGIVDLSHDEfsLNGIAnlvsthkqvrWLAFIRESQL-----------SSDT 95
Cdd:COG2204 21 LLERAGYEVETAASGEEALALLREEPPDLVLLDLRMPG--MDGLE----------LLRELRALDPdlpvilltgygDVET 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 96 ICQFIVNFCIDFFTAPIPDAQLLGTIGHQLGMLKLEKKVWPhygsnnDMGLIGESIPMKRLRDQIKRIGPTDVSILIYGE 175
Cdd:COG2204 89 AVEAIKAGAFDYLTKPFDLEELLAAVERALERRRLRRENAE------DSGLIGRSPAMQEVRRLIEKVAPSDATVLITGE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 176 SGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINRD-----DVSEPSILEKANGGTILLNDILTLPKSQQ 250
Cdd:COG2204 163 SGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGHEKGaftgaVARRIGKFELADGGTLFLDEIGEMPLALQ 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 251 LNLLRFLQEGTIETINGRQE--VDVRILAANSADIEKALIDGDFNEELYHYINVLRINVPSLKERAGDIAILARHFLQEY 328
Cdd:COG2204 243 AKLLRVLQEREFERVGGNKPipVDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARF 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 329 SKEYNAQARsYTEEATRALTRYHWPGNVRELMNQIKRIVLMSETVMLDEQHLDLPkrsdgkrslksiRERSERDALLLVL 408
Cdd:COG2204 323 AAELGKPVK-LSPEALEALLAYDWPGNVRELENVIERAVILADGEVITAEDLPEA------------LEEVERELIERAL 389
|
410 420
....*....|....*....|....*....
gi 2199944867 409 ESHSGQVSMAAKELGVSRATMYRLLNKHN 437
Cdd:COG2204 390 EETGGNVSRAAELLGISRRTLYRKLKKYG 418
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
145-439 |
3.72e-101 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 309.01 E-value: 3.72e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 145 GLIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFG------- 217
Cdd:COG3829 139 DIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGyekgaft 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 218 -INRDDvsEPSILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQE--VDVRILAANSADIEKALIDGDFNE 294
Cdd:COG3829 219 gAKKGG--KPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPipVDVRIIAATNRDLEEMVEEGRFRE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 295 ELYHYINVLRINVPSLKERAGDIAILARHFLQEYSKEYNAQARSYTEEATRALTRYHWPGNVRELMNQIKRIVLMSETVM 374
Cdd:COG3829 297 DLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDV 376
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2199944867 375 LDEQHL-------DLPKRSDGKRSLKSIRERSERDALLLVLESHSGQVSMAAKELGVSRATMYRLLNKHNLI 439
Cdd:COG3829 377 ITPEHLpeylleeAEAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGIK 448
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
106-438 |
3.62e-93 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 288.57 E-value: 3.62e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 106 DFFTAPIpDAQLLG-TIGHQLGMLKLE---KKVWPHYGSNNDMGLIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKE 181
Cdd:TIGR02915 98 DFYQKPI-DPDVLKlIVDRAFHLYTLEtenRRLQSALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKE 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 182 TVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINRDDVS-----EPSILEKANGGTILLNDILTLPKSQQLNLLRF 256
Cdd:TIGR02915 177 VLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTgavkqTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRF 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 257 LQEGTIETINGRQE--VDVRILAANSADIEKALIDGDFNEELYHYINVLRINVPSLKERAGDIAILARHFLQEYSKEYNA 334
Cdd:TIGR02915 257 LQERVIERLGGREEipVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKR 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 335 QARSYTEEATRALTRYHWPGNVRELMNQIKRIVLMSETVMLDEQHLDLPKRSDGKR----SLKSIRERSERDALLLVLES 410
Cdd:TIGR02915 337 KTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQITAEDLGLDARERAETplevNLREVRERAEREAVRKAIAR 416
|
330 340
....*....|....*....|....*...
gi 2199944867 411 HSGQVSMAAKELGVSRATMYRLLNKHNL 438
Cdd:TIGR02915 417 VDGNIARAAELLGITRPTLYDLMKKHGI 444
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
145-437 |
4.06e-80 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 259.83 E-value: 4.06e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 145 GLIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINR---- 220
Cdd:COG3284 322 ALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPgaft 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 221 --DDVSEPSILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQE--VDVRILAANSADIEKALIDGDFNEEL 296
Cdd:COG3284 402 gaRRKGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPipVDVRLIAATHRDLRELVAAGRFREDL 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 297 YHYINVLRINVPSLKERAgDIAILARHFLQEYSKEynAQARSYTEEATRALTRYHWPGNVRELMNQIKRIVLMSETVMLD 376
Cdd:COG3284 482 YYRLNGLTLTLPPLRERE-DLPALIEHLLRELAAG--RGPLRLSPEALALLAAYPWPGNVRELRNVLRTALALADGGVIT 558
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2199944867 377 EQHL------DLPKRSDGKRSLKSIRERSERDALLLVLESHSGQVSMAAKELGVSRATMYRLLNKHN 437
Cdd:COG3284 559 VEDLpdelraELAAAAPAAAAPLTSLEEAERDAILRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
146-432 |
1.20e-68 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 226.59 E-value: 1.20e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 146 LIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFG-------- 217
Cdd:PRK05022 189 MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGhvkgaftg 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 218 --INRddvsePSILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQE--VDVRILAANSADIEKALIDGDFN 293
Cdd:PRK05022 269 aiSNR-----SGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSlrVDVRVIAATNRDLREEVRAGRFR 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 294 EELYHYINVLRINVPSLKERAGDIAILARHFLQEYSKEYNAQARSYTEEATRALTRYHWPGNVRELMNQIKRIVLM---- 369
Cdd:PRK05022 344 ADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLarar 423
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2199944867 370 --SETVMLDEQHLDLPKRSD-------------GKRSLKSIRERSERDALLLVLESHSGQVSMAAKELGVSRATMYRL 432
Cdd:PRK05022 424 gaGRIVTLEAQHLDLPAEVAlpppeaaaapaavVSQNLREATEAFQRQLIRQALAQHQGNWAAAARALELDRANLHRL 501
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
145-432 |
5.37e-68 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 223.57 E-value: 5.37e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 145 GLIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINRDDVS 224
Cdd:PRK11361 144 HILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFT 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 225 -----EPSILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQ--EVDVRILAANSADIEKALIDGDFNEELY 297
Cdd:PRK11361 224 gaqtlRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQtiKVDIRIIAATNRDLQAMVKEGTFREDLF 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 298 HYINVLRINVPSLKERAGDIAILARHFLQEYSKEYNAQARSYTEEATRALTRYHWPGNVRELMNQIKRIVLMSE-TVMLD 376
Cdd:PRK11361 304 YRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSgPIIFS 383
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2199944867 377 EqhlDLPKR--------------SDGKRSLKSIRERSERDALLLVLESHSGQVSMAAKELGVS-RATMYRL 432
Cdd:PRK11361 384 E---DLPPQirqpvcnagevktaPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISrRALMYKL 451
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
121-383 |
6.22e-68 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 224.68 E-value: 6.22e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 121 IGHQLGMLklekkvwPHYGSNNDMGLIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFIS 200
Cdd:COG3283 188 LGEQLQAL-------QVNDDSGFDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 201 VNCRAMSERRLESDLFG-----INRDDVSEPSILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQE--VDV 273
Cdd:COG3283 261 LNCAALPDDVAESELFGyapgaFGNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEvkVDV 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 274 RILAANSADIEKALIDGDFNEELYHYINVLRINVPSLKERAGDIAILARHFLQEYSKEYNAQARSYTEEATRALTRYHWP 353
Cdd:COG3283 341 RVICATQKDLAELVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWP 420
|
250 260 270
....*....|....*....|....*....|
gi 2199944867 354 GNVRELMNQIKRIVLMSETVMLDEQHLDLP 383
Cdd:COG3283 421 GNVRQLENALYRAVSLLEGDELTPEDLQLP 450
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
67-435 |
3.30e-67 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 221.06 E-value: 3.30e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 67 LNGIANLvsthKQVRWL-----AFIRESQLSSDTICQFIVNFCIDFFTAPIPDAQLLGTIGHQLGMLKlEKKVWPHYGSN 141
Cdd:PRK10365 62 MDGIATL----KEIKALnpaipVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH-SIDAETPAVTA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 142 NDMGLIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINR- 220
Cdd:PRK10365 137 SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKg 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 221 -----DDVSEPSILEkANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQ--EVDVRILAANSADIEKALIDGDFN 293
Cdd:PRK10365 217 aftgaDKRREGRFVE-ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQtiSVDVRLIAATHRDLAAEVNAGRFR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 294 EELYHYINVLRINVPSLKERAGDIAILARHFLQEYSKEYNAQARSYTEEATRALTRYHWPGNVRELMNQIKRIVLMSETV 373
Cdd:PRK10365 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGE 375
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2199944867 374 MLDEQHLDL-----PKRSDGKRSLKSIRErSERDALLLVLESHSGQVSMAAKELGVSRATMYRLLNK 435
Cdd:PRK10365 376 YISERELPLaiastPIPLGQSQDIQPLVE-VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441
|
|
| VpsR |
pfam20161 |
VpsR domain; VpsR appears superficially to be a response regulator, based on extension of its ... |
4-122 |
1.17e-66 |
|
VpsR domain; VpsR appears superficially to be a response regulator, based on extension of its alignment to response regulators AlgB and NrtC all the way to the N-terminus. Instead of being a response regulator with a histidine kinase partner, the sigma-54-dependent transcription factor VpsR directly binds to cyclic-di-GMP. Its regulon includes genes for the biosynthesis of the biofilm matrix component called Vibrio polysaccharide (VPS).
Pssm-ID: 437993 Cd Length: 121 Bit Score: 208.65 E-value: 1.17e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 4 QFRMDSIPGSLVVVGGTYEPWLSVLEQVGWRCTQCADLRKADALFSETGPCIGIVDLSHDEFSLNGIANLVSTHKQVRWL 83
Cdd:pfam20161 3 QCKADSVPRTLLVVGGPDESWLALLEQAGWQCHRCYDLREAERLLLEIGPCVGLVDLSHDDFSLQGLAALVNRHKQVRWI 82
|
90 100 110
....*....|....*....|....*....|....*....
gi 2199944867 84 AFIRESQLSSDTICQFIVNFCIDFFTAPIPDAQLLGTIG 122
Cdd:pfam20161 83 ALIRPEQLDDDAICQFIVDFCIDYFTSPIPDARLLFTIG 121
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
146-433 |
2.46e-66 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 219.22 E-value: 2.46e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 146 LIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINRDDVSE 225
Cdd:TIGR01818 136 LIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 226 PSI-----LEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGR--QEVDVRILAANSADIEKALIDGDFNEELYH 298
Cdd:TIGR01818 216 ANTrrqgrFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRtpIKVDVRIVAATHQNLEALVRQGKFREDLFH 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 299 YINVLRINVPSLKERAGDIAILARHFLQEYSKEYNAQARSYTEEATRALTRYHWPGNVRELMNQIKRIVLMS--ETVMLD 376
Cdd:TIGR01818 296 RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMAsgDEVLVS 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 377 ----------------------------EQHLDLPKRSDGKRSLKSIRERSERDALLLVLESHSGQVSMAAKELGVSRAT 428
Cdd:TIGR01818 376 dlpaelaltgrpasapdsdgqdswdealEAWAKQALSRGEQGLLDRALPEFERPLLEAALQHTRGHKQEAAALLGWGRNT 455
|
....*
gi 2199944867 429 MYRLL 433
Cdd:TIGR01818 456 LTRKL 460
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
168-438 |
5.45e-66 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 214.71 E-value: 5.45e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 168 VSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESdlfginrddvsepsilekanggtillndiltlpk 247
Cdd:COG3604 116 AAVAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES---------------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 248 sqqlnllrfLQEGTIETINGRQE--VDVRILAANSADIEKALIDGDFNEELYHYINVLRINVPSLKERAGDIAILARHFL 325
Cdd:COG3604 162 ---------LQEGEFERVGGDETikVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLLAEHFL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 326 QEYSKEYNAQARSYTEEATRALTRYHWPGNVRELMNQIKRIVLMSETVMLDEQHLDLPKRSDgkrslksiRERSERDALL 405
Cdd:COG3604 233 EKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAPGSREA--------LEEVEREHIL 304
|
250 260 270
....*....|....*....|....*....|...
gi 2199944867 406 LVLESHSGQVSMAAKELGVSRATMYRLLNKHNL 438
Cdd:COG3604 305 EALERTGGNIAGAARLLGLTPSTLRSRMKKLGI 337
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
146-435 |
2.18e-64 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 215.88 E-value: 2.18e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 146 LIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINRDDVS- 224
Cdd:TIGR02329 214 LLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTg 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 225 -----EPSILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQ--EVDVRILAANSADIEKALIDGDFNEELY 297
Cdd:TIGR02329 294 arrggRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEpvPVDVRVVAATHCALTTAVQQGRFRRDLF 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 298 HYINVLRINVPSLKERAGDIAILARHFLQEYSKEYN----AQARSYTEEATRALTRYHWPGNVRELMNQIKRIVLM---- 369
Cdd:TIGR02329 374 YRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRlpdsEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALElsam 453
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2199944867 370 -SETVMLDEQHLDLPKRSD----GKRSLKSIRERSERDALLL--VLESHSGQVSMAAKELGVSRATMYRLLNK 435
Cdd:TIGR02329 454 pAGALTPDVLRALAPELAEasgkGKTSALSLRERSRVEALAVraALERFGGDRDAAAKALGISRTTLWRRLKA 526
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
146-438 |
3.28e-64 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 213.16 E-value: 3.28e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 146 LIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINRDDV-- 223
Cdd:PRK15115 136 IVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFtg 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 224 ---SEPSILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETI--NGRQEVDVRILAANSADIEKALIDGDFNEELYH 298
Cdd:PRK15115 216 avsNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLgsNRDIDIDVRIISATHRDLPKAMARGEFREDLYY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 299 YINVLRINVPSLKERAGDIAILARHFLQEYSKEYNAQARSYTEEATRALTRYHWPGNVRELMNQIKRIV-LMSETVMLD- 376
Cdd:PRK15115 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVaLTSSPVISDa 375
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2199944867 377 --EQHLD-----LPkrsdgkrSLKSIRERSERDALLLVLESHSGQVSMAAKELGVSRATMYRLLNKHNL 438
Cdd:PRK15115 376 lvEQALEgentaLP-------TFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
146-438 |
2.34e-59 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 203.03 E-value: 2.34e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 146 LIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKT--------SSRAQKEFISVNCRAMSERRLESDLFG 217
Cdd:PRK15424 221 LLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREyfarhdarQGKKSHPFVAVNCGAIAESLLEAELFG 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 218 INRDDVS------EPSILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQ--EVDVRILAANSADIEKALID 289
Cdd:PRK15424 301 YEEGAFTgsrrggRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQpvPVDVRVISATHCDLEEDVRQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 290 GDFNEELYHYINVLRINVPSLKERAGDIAILARHFLQEYSKEYN----AQARSYTEEATRALTRYHWPGNVRELMNQIKR 365
Cdd:PRK15424 381 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSapfsAALRQGLQQCETLLLHYDWPGNVRELRNLMER 460
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2199944867 366 IVLM---SETVMLDEQHLD--LPKRSDGKRSLKSIRERSErdALLLVLESHSGQVSMAAKELGVSRATMYRLLNKHNL 438
Cdd:PRK15424 461 LALFlsvEPTPDLTPQFLQllLPELARESAKTPAPRLLAA--TLQQALERFNGDKTAAANYLGISRTTLWRRLKAEAK 536
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
146-305 |
3.25e-57 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 186.07 E-value: 3.25e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 146 LIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINRD---- 221
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGaftg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 222 -DVSEPSILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQE--VDVRILAANSADIEKALIDGDFNEELYH 298
Cdd:pfam00158 81 aDSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPikVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 2199944867 299 YINVLRI 305
Cdd:pfam00158 161 RLNVIPI 167
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
136-433 |
2.44e-56 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 193.16 E-value: 2.44e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 136 PHYGSNNDMglIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDL 215
Cdd:PRK10923 132 QVNGPTTDI--IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESEL 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 216 FGINRDDVSEPSIL-----EKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQ--EVDVRILAANSADIEKALI 288
Cdd:PRK10923 210 FGHEKGAFTGANTIrqgrfEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYApvKVDVRIIAATHQNLEQRVQ 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 289 DGDFNEELYHYINVLRINVPSLKERAGDIAILARHFLQEYSKEYNAQARSYTEEATRALTRYHWPGNVRELMNQIKRIVL 368
Cdd:PRK10923 290 EGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTV 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 369 MS---------------ETVMLDEQHLDLPKR-------------SDGKRSLKS-IRERSERDALLLVLESHSGQVSMAA 419
Cdd:PRK10923 370 MAagqevliqdlpgelfESTVPESTSQMQPDSwatllaqwadralRSGHQNLLSeAQPELERTLLTTALRHTQGHKQEAA 449
|
330
....*....|....
gi 2199944867 420 KELGVSRATMYRLL 433
Cdd:PRK10923 450 RLLGWGRNTLTRKL 463
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
146-436 |
1.77e-52 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 179.03 E-value: 1.77e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 146 LIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINRDDVS- 224
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 225 ----EPSILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQ--EVDVRILAANSADIEKALIDGDFNEELYH 298
Cdd:TIGR02974 81 aqkrHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQtlQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 299 YINVLRINVPSLKERAGDIAILARHFLQEYSKEYNAQARS-YTEEATRALTRYHWPGNVRELMNQIKRIVLMS------- 370
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPgFTPQAREQLLEYHWPGNVRELKNVVERSVYRHgleeapi 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 371 ETVMLD-------------------EQHLDLPKRSDGK----RSLKSIRERSERDALLLVLESHSGQVSMAAKELGVSRA 427
Cdd:TIGR02974 241 DEIIIDpfaspwrpkqaapavdevnSTPTDLPSPSSIAaafpLDLKQAQQDYEIELLQQALAEAQFNQRKAAELLGLTYH 320
|
....*....
gi 2199944867 428 TMYRLLNKH 436
Cdd:TIGR02974 321 QLRGLLRKH 329
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
121-425 |
8.23e-52 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 182.19 E-value: 8.23e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 121 IGHQLGMLklekkvwphygSNNDMG----LIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQK 196
Cdd:PRK10820 188 MGRQLQNL-----------AVNDDSafsqIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKK 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 197 EFISVNCRAMSERRLESDLFG------INRDDvSEPSILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQE 270
Cdd:PRK10820 257 PFLALNCASIPDDVVESELFGhapgayPNALE-GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 271 --VDVRILAANSADIEKALIDGDFNEELYHYINVLRINVPSLKERAGDIAILARHFLQEYSKEYNAQARSYTEEATRALT 348
Cdd:PRK10820 336 vhVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 349 RYHWPGNVRELMNQIKRIVLMSETVMLDEQHLDLPKRS----------DGkrSLKSIRERSERdALLLVLESHSGQVSMA 418
Cdd:PRK10820 416 RYGWPGNVRQLKNAIYRALTQLEGYELRPQDILLPDYDaavavgedamEG--SLDEITSRFER-SVLTRLYRNYPSTRKL 492
|
....*..
gi 2199944867 419 AKELGVS 425
Cdd:PRK10820 493 AKRLGVS 499
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
146-438 |
3.19e-50 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 180.26 E-value: 3.19e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 146 LIGESIPMKRL----RDQIKRIGPtdvsILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINR- 220
Cdd:PRK11388 327 MPQDSPQMRRLihfgRQAAKSSFP----VLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRt 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 221 -DDVSEPSILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQ--EVDVRILAANSADIEKALIDGDFNEELY 297
Cdd:PRK11388 403 dSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRliPVDVRVIATTTADLAMLVEQNRFSRQLY 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 298 HYINVLRINVPSLKERAGDIAILARHFLQEYSKEYNAQArSYTEEATRALTRYHWPGNVRELMNQIKRIVLMSetvmlDE 377
Cdd:PRK11388 483 YALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSYRWPGNDFELRSVIENLALSS-----DN 556
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2199944867 378 QHL---DLPK---------RSDGKRSLKSIR-ERSERDALLLVLESHSGQVSMAAKELGVSRATMYRLLNKHNL 438
Cdd:PRK11388 557 GRIrlsDLPEhlfteqatdDVSATRLSTSLSlAELEKEAIINAAQVCGGRIQEMAALLGIGRTTLWRKMKQHGI 630
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
139-429 |
8.39e-47 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 171.17 E-value: 8.39e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 139 GSNNDMG-LIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFG 217
Cdd:PRK15429 370 NVDSEFGeIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFG 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 218 INRDDVSEPSI-----LEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQ--EVDVRILAANSADIEKALIDG 290
Cdd:PRK15429 450 HERGAFTGASAqrigrFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKiiQTDVRLIAATNRDLKKMVADR 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 291 DFNEELYHYINVLRINVPSLKERAGDIAILARHFLQEYSKEYNAQARSYTEEATRALTRYHWPGNVRELMNQIKRIVLMS 370
Cdd:PRK15429 530 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2199944867 371 ETVMLdeqHLDLPKRSDGKRSLKSIRE------RSERDALLLVLESHSGQVS---MAAKELGVSRATM 429
Cdd:PRK15429 610 RGNVL---QLSLPDITLPEPETPPAATvvaqegEDEYQLIVRVLKETNGVVAgpkGAAQRLGLKRTTL 674
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
146-438 |
1.06e-43 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 155.98 E-value: 1.06e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 146 LIGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFG-------- 217
Cdd:PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGheagaftg 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 218 -INRddvsEPSILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRQ--EVDVRILAANSADIEKALIDGDFNE 294
Cdd:PRK11608 88 aQKR----HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQplQVNVRLVCATNADLPAMVAEGKFRA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 295 ELYHYINVLRINVPSLKERAGDIAILARHFLQEYSKEYNAQARS-YTEEATRALTRYHWPGNVRELMNQIKRIVLM---S 370
Cdd:PRK11608 164 DLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPgFTERARETLLNYRWPGNIRELKNVVERSVYRhgtS 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 371 ETVmLDEQHLDLPKRSDGKRS---------------LKSIRERSERDALLLVL-ESHSGQvSMAAKELGVSRATMYRLLN 434
Cdd:PRK11608 244 EYP-LDNIIIDPFKRRPAEEAiavsettslptlpldLREWQHQQEKELLQRSLqQAKFNQ-KRAAELLGLTYHQLRALLK 321
|
....
gi 2199944867 435 KHNL 438
Cdd:PRK11608 322 KHQI 325
|
|
| Regu_Geo_Pelo |
NF038230 |
GPMC system transcriptional regulator; Members of this family are family are sigma ... |
169-359 |
1.14e-23 |
|
GPMC system transcriptional regulator; Members of this family are family are sigma 54-interacting transcriptional regulators of the GPMC (Geobacter/Pelobacter Mystery Cassette) system, in which the most distinctive signature is the TIGR04442 protein family.
Pssm-ID: 468419 [Multi-domain] Cd Length: 935 Bit Score: 104.37 E-value: 1.14e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 169 SILIYGESGTGKETVARAVHKTSSRAQKEFIS---------VNCRAMSERRLESDLFGINRDDVSEPS-----ILEKANG 234
Cdd:NF038230 593 SILITGETGSGKEFLFNNLYSRLNEMYREQLNprgelpvkkTNIAAYSGELTYSELFGHKRGAFTGAHadrkgILEEAHG 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 235 GTILLNDILTL-PKSQqLNLLRFLQEGTIETINGRQEVDVRIL--AANSADIEKALIDGDFNEELYHYINVLRINVPSLK 311
Cdd:NF038230 673 GVVFLDEIGDAdPKTQ-VQLLRFLDNGGFVRLGENQTRFSRVLlvAATNKDLRQLIAEGLFREDLYHRLSELTIEVPSLN 751
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2199944867 312 ERAGDIAILARHFL----QEYSK--EYNAQARSYTEEATRALTRYHWPGNVREL 359
Cdd:NF038230 752 ERREDIPDLAVHFLgklyRVYRGpeETEEDPPILSEDAKQLLVQHHYTGNIREL 805
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
147-310 |
7.76e-18 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 79.69 E-value: 7.76e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 147 IGESIPMKRLRDQIKRIGPTDVSILIYGESGTGKETVARAVHKTSSRaqkefisvncramserrlESDLFGINRdDVSEP 226
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTP------------------WVQPFDIEY-LAHAP 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 227 -SILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTIEtingrqevDVRILAANSADIEKALIDGDFNEELYHYINVLRI 305
Cdd:pfam14532 62 lELLEQAKGGTLYLKDIADLSKALQKGLLLLLAKAEGY--------RVRLVCTSSKDLPQLAAAGLFDEQLYFELSALRL 133
|
....*
gi 2199944867 306 NVPSL 310
Cdd:pfam14532 134 HVPPL 138
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
153-309 |
8.25e-16 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 74.49 E-value: 8.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 153 MKRLRDQIKRI--GPTDVSILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINRDDVSEpSILE 230
Cdd:cd00009 3 QEEAIEALREAleLPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLF-ELAE 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2199944867 231 KANGGTILLNDILTLPKSQQLNLLRFLQEGTIETINGRqevDVRILAANSADiekalIDGDFNEELYHYINvLRINVPS 309
Cdd:cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRE---NVRVIGATNRP-----LLGDLDRALYDRLD-IRIVIPL 151
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
170-364 |
7.88e-13 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 70.52 E-value: 7.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 170 ILIYGESGTGKETVARAVHKTSSRAQK-----EFISVNCrA---------MSErrlesdLFGI--------NRDdvsEPS 227
Cdd:COG1221 133 TLILGPTGVGKSFFAELMYEYAIEIGVlpedaPFVVFNC-AdyannpqllMSQ------LFGYvkgaftgaDKD---KEG 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 228 ILEKANGGTILLNDILTLPKSQQLNLLRFLQEGTI----ETINGRqEVDVRILAANSADIEKALIDgDFneelyhyinvL 303
Cdd:COG1221 203 LIEKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYrrlgETEKTR-KANVRIIFATTEDPESSLLK-TF----------L 270
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2199944867 304 R-----INVPSLKERAGD--IAILaRHFLQEYSKEYNAQARsYTEEATRALTRYHWPGNVRELMNQIK 364
Cdd:COG1221 271 RripmvIKLPSLEERSLEerLELI-KHFFKEEAKRLNKPIK-VSKEVLKALLLYDCPGNIGQLKSDIQ 336
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
169-298 |
3.93e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 52.38 E-value: 3.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 169 SILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERRLESDLFGINRDDVSEPS----------ILEKANGGTIL 238
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSgelrlrlalaLARKLKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2199944867 239 LNDILTLPKSQQLNLLRFLQEGTIETINgRQEVDVRILAAN--SADIEKALIDGDFNEELYH 298
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEELRLLLLL-KSEKNLTVILTTndEKDLGPALLRRRFDRRIVL 144
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
396-435 |
1.14e-05 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 42.00 E-value: 1.14e-05
10 20 30 40
....*....|....*....|....*....|....*....|
gi 2199944867 396 RERSERDALLLVLESHSGQVSMAAKELGVSRATMYRLLNK 435
Cdd:pfam02954 1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
169-289 |
4.01e-05 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 43.05 E-value: 4.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 169 SILIYGESGTGKETVARAV-HKTSsraQKEFISVNC-RAMSerrlESDLFGI----NRDDVSEPSILEKA--NGGTILLN 240
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLaAALS---NRPVFYVQLtRDTT----EEDLFGRrnidPGGASWVDGPLVRAarEGEIAVLD 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2199944867 241 DILTLPKSQQLNLLRFLQEGTIETINGRQEVDVR------ILAANSADIEKALID 289
Cdd:pfam07728 74 EINRANPDVLNSLLSLLDERRLLLPDGGELVKAApdgfrlIATMNPLDRGLNELS 128
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
146-262 |
2.99e-03 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 39.68 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 146 LIGESIPMKRLRDQiKRIGptdvSILIYGESGTGKETVARAVhktSSRAQKEFISVNcrAMSerrlesdlFGINrdDVSE 225
Cdd:PRK13342 20 LLGPGKPLRRMIEA-GRLS----SMILWGPPGTGKTTLARII---AGATDAPFEALS--AVT--------SGVK--DLRE 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2199944867 226 psILEKA------NGGTILLND-ILTLPKSQQLNLLRFLQEGTI 262
Cdd:PRK13342 80 --VIEEArqrrsaGRRTILFIDeIHRFNKAQQDALLPHVEDGTI 121
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
146-204 |
3.49e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 38.25 E-value: 3.49e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199944867 146 LIGESIPMKRLRDQIKRIGPTDV-SILIYGESGTGKETVARAVHKTSSRAQKEFISVNCR 204
Cdd:pfam13191 2 LVGREEELEQLLDALDRVRSGRPpSVLLTGEAGTGKTTLLRELLRALERDGGYFLRGKCD 61
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
169-210 |
4.29e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 37.32 E-value: 4.29e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2199944867 169 SILIYGESGTGKETVARAVHKTSSRAQKEFISVNCRAMSERR 210
Cdd:pfam13401 7 ILVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLPSGTSPK 48
|
|
| |
