|
Name |
Accession |
Description |
Interval |
E-value |
| MATE_Wzx_like |
cd13128 |
Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; ... |
18-395 |
8.01e-26 |
|
Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240533 [Multi-domain] Cd Length: 402 Bit Score: 109.17 E-value: 8.01e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 18 LLQGRFISHIIGFIGSILVIRILEPTDYGILSIAMSLPYTVSIFGNLGVNTAVTRFVAKYKEIDLKKaysMIASGIIFDV 97
Cdd:cd13128 8 LFVGNIISKLLGFLVRVYLARYLGPEGFGILSLALAFVGLFSIFADLGLPTALVREIARYRKEKIRE---IISTSLVLKL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 98 IYGLLLSVIGYLLTPYIVtyiYNKPEIIPYSEFASFFTIPYWASSSIFSGILGLELTKHNSEMWIIHYSVQTILSVGLAL 177
Cdd:cd13128 85 ILGILALLLLFLFAFLIA---FYDPELVLLLYILALSLPFSALNSLFRGIFQGFEKMKYIVIARIIESVLSLILALILVL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 178 SFLRVYGVIISYIIGYTAIVIYGIVILKRK---SLLGKPSINTIKELVVFGFPLVLPSLGSSVSGIYTTSLVNRFLSIFE 254
Cdd:cd13128 162 LGGGLIGFALAYLIASVLSAILLLYIYRKKillPKFFSFDLKLAKELLRFSIPLALSGIFSLIYTRIDTIMLGYFLGDAA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 255 ISNLTASSKLGTLFDTILNPLSYALQPTLSKLDKNKHD-ITKVTNELYKLNIILQLPILISVEYLAYQIIYILAGTQYTL 333
Cdd:cd13128 242 VGIYNAAYRIAELLLFIPSAISTALFPRISELYKNDKDeLKKLLKKSFKYLFLISLPIAIGLFLFAEPIITLLFGEEYLP 321
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2205656897 334 APLLLRLSLINPLITTAAGasIINSLLLFQGYSKLVARINLINIIFYVLLLFFLLPNFSYIG 395
Cdd:cd13128 322 AALVLQILAWGFLFIFLNG--IFGSILQAIGKQKLTLKILLIGALLNVILNLLLIPKYGIIG 381
|
|
| RfbX |
COG2244 |
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane ... |
9-412 |
6.54e-20 |
|
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441845 [Multi-domain] Cd Length: 366 Bit Score: 91.16 E-value: 6.54e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 9 KNLTLNYVNLLQGRFISHIIGFIGSILVIRILEPTDYGILSIAMSLPYTVSIFGNLGVNTAVTRFVAKYKEIDLKKaysM 88
Cdd:COG2244 2 KKLLKNTLWLLLGQLLGALLGFLLLPLLARLLGPEEYGLFALALSIVALLSVLADLGLSTALVRFIAEYREEELRR---L 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 89 IASGIIFDVIYGLLLSVIGYLLTPYIVTYiYNKPEIIPYSEFASFFTIPYWASSSIFSGILGLELTKHNSEMWIIHYSVQ 168
Cdd:COG2244 79 LSTALLLRLLLSLLLALLLLLLAPFIAAL-LGEPELALLLLLLALALLLSALSAVLLALLRGLERFKLLALINILSSLLS 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 169 TILSVGLALSFLRVYGVIISYiigytaiviygivilkrksllgkpsintikelvvfGFPLVLPSLGSSVSGIYTTSLVNR 248
Cdd:COG2244 158 LLLALLLALLGLGLWGLVLKY-----------------------------------SLPLLLSGLLGLLLTNLDRLLLGA 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 249 FLSIFEISNLTASSKLGTLFDTILNPLSYALQPTLSKL--DKNKHDITKVTNELYKLNIILQLPILISVEYLAYQIIYIL 326
Cdd:COG2244 203 LLGPAAVGIYSAAYRLASLLLLLITALSQVLFPRLSRLlaEGDREELRRLYRKALRLLLLLGLPLALGLALLAPPLLSLL 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 327 AGTQYTLAPLLLRLSLINPLITTAAGasIINSLLLFQGYSKLVARINLINIIFYVLLLFFLLPNFSYIGYFISNWLGWIP 406
Cdd:COG2244 283 FGPEYAEAAPVLPILALGALFLALSG--VLSNLLLALGRTRLLLIISLIGAVLNLVLNLLLIPRYGLVGAAIATLLSYLV 360
|
....*.
gi 2205656897 407 GYIISL 412
Cdd:COG2244 361 LLLLLL 366
|
|
| Polysacc_synt |
pfam01943 |
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. ... |
18-286 |
7.03e-12 |
|
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Pssm-ID: 426523 [Multi-domain] Cd Length: 274 Bit Score: 65.79 E-value: 7.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 18 LLQGRFISHIIGFIGSILVIRILEPTDYGILSIAMSLPYTVSIFGNLGVNTAVTRFVAKYKEidlkkaYSMIASGIIFDV 97
Cdd:pfam01943 8 LLLSQLITYLLAFVTLPYLARILGPEGFGLYAFALAFVGLLTIFTDFGFNAALVREIAKYRE------KYELVSLYWLNA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 98 IYGLLLSVIGYLLTPYIvTYIYNKPEIIPYSEFASFFTIPYWASSSIFSGIL-GLELTKHNSEMWIIHYSVQTILSVGLA 176
Cdd:pfam01943 82 LLVKLVLVLLFLLLPLI-AAFLGLPELAVLYRILALMFLLLPGVVQFRRGLFqGLERMKYALISQIVESLSRVILVFIAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 177 LSFLRVYGVIISYIIGYTAIVIYGIVILKRK--SLLGKPSINTIKELVVFGFPLVLPSLGSSVSGIYTTSLVNRFLSIFE 254
Cdd:pfam01943 161 FLPGDIVAALLYQVLAALVGGIIALAVLRKIfrPRFVFPSLKLVRKLLSFGAPLFISSLAISLYTYIDSILLGLLLGAGA 240
|
250 260 270
....*....|....*....|....*....|...
gi 2205656897 255 ISNLTASSKLGTLFDTILNP-LSYALQPTLSKL 286
Cdd:pfam01943 241 VGIYNAAYQLLVAIQGLLNPiVTAVLFPVFSKL 273
|
|
| matE |
TIGR00797 |
putative efflux protein, MATE family; The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A. ... |
40-253 |
6.43e-03 |
|
putative efflux protein, MATE family; The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS. [Transport and binding proteins, Other]
Pssm-ID: 273273 [Multi-domain] Cd Length: 342 Bit Score: 38.77 E-value: 6.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 40 LEPTDYGILSIAMSLpYTVSIFGNLGVNTAVTRFVAK-YKEIDLKKAYSMIASGIIFDVIYGLLLSVIGYLLTPYIVTYI 118
Cdd:TIGR00797 23 LGPVDLAAVSLGSSV-FMFLFSILMGLGTATTALVAQaVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLM 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 119 YNKPEII----PYSEFASFFTIPYWASSSIFSGILGLELTKHNSEMWIIHYSVQTILSVGL---ALSFLRVYGVIISYII 191
Cdd:TIGR00797 102 GADGEVAelaqDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILifgKFGFLGIVGAALATVI 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2205656897 192 GYTAIVIYGIVILKRKSLLG-------KPSINTIKELVVFGFPLVLPSLGSSVSGIYTTSLVNRFLSIF 253
Cdd:TIGR00797 182 SYWLMFLLLLYYIKKAKKIGlkwegllKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIA 250
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| MATE_Wzx_like |
cd13128 |
Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; ... |
18-395 |
8.01e-26 |
|
Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240533 [Multi-domain] Cd Length: 402 Bit Score: 109.17 E-value: 8.01e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 18 LLQGRFISHIIGFIGSILVIRILEPTDYGILSIAMSLPYTVSIFGNLGVNTAVTRFVAKYKEIDLKKaysMIASGIIFDV 97
Cdd:cd13128 8 LFVGNIISKLLGFLVRVYLARYLGPEGFGILSLALAFVGLFSIFADLGLPTALVREIARYRKEKIRE---IISTSLVLKL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 98 IYGLLLSVIGYLLTPYIVtyiYNKPEIIPYSEFASFFTIPYWASSSIFSGILGLELTKHNSEMWIIHYSVQTILSVGLAL 177
Cdd:cd13128 85 ILGILALLLLFLFAFLIA---FYDPELVLLLYILALSLPFSALNSLFRGIFQGFEKMKYIVIARIIESVLSLILALILVL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 178 SFLRVYGVIISYIIGYTAIVIYGIVILKRK---SLLGKPSINTIKELVVFGFPLVLPSLGSSVSGIYTTSLVNRFLSIFE 254
Cdd:cd13128 162 LGGGLIGFALAYLIASVLSAILLLYIYRKKillPKFFSFDLKLAKELLRFSIPLALSGIFSLIYTRIDTIMLGYFLGDAA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 255 ISNLTASSKLGTLFDTILNPLSYALQPTLSKLDKNKHD-ITKVTNELYKLNIILQLPILISVEYLAYQIIYILAGTQYTL 333
Cdd:cd13128 242 VGIYNAAYRIAELLLFIPSAISTALFPRISELYKNDKDeLKKLLKKSFKYLFLISLPIAIGLFLFAEPIITLLFGEEYLP 321
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2205656897 334 APLLLRLSLINPLITTAAGasIINSLLLFQGYSKLVARINLINIIFYVLLLFFLLPNFSYIG 395
Cdd:cd13128 322 AALVLQILAWGFLFIFLNG--IFGSILQAIGKQKLTLKILLIGALLNVILNLLLIPKYGIIG 381
|
|
| RfbX |
COG2244 |
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane ... |
9-412 |
6.54e-20 |
|
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441845 [Multi-domain] Cd Length: 366 Bit Score: 91.16 E-value: 6.54e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 9 KNLTLNYVNLLQGRFISHIIGFIGSILVIRILEPTDYGILSIAMSLPYTVSIFGNLGVNTAVTRFVAKYKEIDLKKaysM 88
Cdd:COG2244 2 KKLLKNTLWLLLGQLLGALLGFLLLPLLARLLGPEEYGLFALALSIVALLSVLADLGLSTALVRFIAEYREEELRR---L 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 89 IASGIIFDVIYGLLLSVIGYLLTPYIVTYiYNKPEIIPYSEFASFFTIPYWASSSIFSGILGLELTKHNSEMWIIHYSVQ 168
Cdd:COG2244 79 LSTALLLRLLLSLLLALLLLLLAPFIAAL-LGEPELALLLLLLALALLLSALSAVLLALLRGLERFKLLALINILSSLLS 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 169 TILSVGLALSFLRVYGVIISYiigytaiviygivilkrksllgkpsintikelvvfGFPLVLPSLGSSVSGIYTTSLVNR 248
Cdd:COG2244 158 LLLALLLALLGLGLWGLVLKY-----------------------------------SLPLLLSGLLGLLLTNLDRLLLGA 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 249 FLSIFEISNLTASSKLGTLFDTILNPLSYALQPTLSKL--DKNKHDITKVTNELYKLNIILQLPILISVEYLAYQIIYIL 326
Cdd:COG2244 203 LLGPAAVGIYSAAYRLASLLLLLITALSQVLFPRLSRLlaEGDREELRRLYRKALRLLLLLGLPLALGLALLAPPLLSLL 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 327 AGTQYTLAPLLLRLSLINPLITTAAGasIINSLLLFQGYSKLVARINLINIIFYVLLLFFLLPNFSYIGYFISNWLGWIP 406
Cdd:COG2244 283 FGPEYAEAAPVLPILALGALFLALSG--VLSNLLLALGRTRLLLIISLIGAVLNLVLNLLLIPRYGLVGAAIATLLSYLV 360
|
....*.
gi 2205656897 407 GYIISL 412
Cdd:COG2244 361 LLLLLL 366
|
|
| MATE_tuaB_like |
cd13127 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ... |
21-416 |
2.26e-15 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240532 [Multi-domain] Cd Length: 406 Bit Score: 77.91 E-value: 2.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 21 GRFISHIIGFIGSILVIRILEPTDYGILSIAMSLPYTVSIFGNLGVNTAVTRfvakyKEIDLKKAYSmiaSGIIFDVIYG 100
Cdd:cd13127 11 SQVVVQLLQFVVTIILARLLTPEDFGLVAMATVFIAFAQLFSDLGLSSALIQ-----RKDLTEEDLS---TVFWLNLLLG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 101 LLLSVIGYLLTPYIVTYiYNKPEIIPYSEFASfFTIPYWASSSIFSGILGLELtKHNSEMWI--IHYSVQTILSVGLALS 178
Cdd:cd13127 83 LLLYLLLFLLAPLIAAF-YNEPELIPLLRVLS-LSFLLSGLGSVPRALLQREL-RFKKLAIIelISTLVSGVVAIVLALL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 179 FLRVYGVIISYIIGYTAIVIyGIVILKRKSLLGKPSINTIKELVVFGFPLVLPSLGSSVSGIYTTSLVNRFLSIFEISNL 258
Cdd:cd13127 160 GFGVWALVAQQLVGALVSTV-LLWILSRWRPRLSFSLASLKELLSFGSKLLGSNLLNYFSRNLDNLIIGKFLGAAALGYY 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 259 TASSKLGTLFDTILN-PLSYALQPTLSKLDKNKHDITKVTNELYKLNIILQLPILISVEYLAYQIIYILAGTQYTLAPLL 337
Cdd:cd13127 239 SRAYRLALLPVQNITgPITRVLFPALSRLQDDPERLRRAYLKALRLLALITFPLMVGLALLAEPLVLLLLGEKWLPAVPI 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 338 LRLSLINPLITTAagASIINSLLLFQGYSKLVARINLINIIFYVLLLFFLLPNFSY---IGYFISNWLGWIPGYIISLSF 414
Cdd:cd13127 319 LQILALAGLFQPL--SSLNGSLLLALGRTDLLLKLGLIKAVLTVLALLIGIPYGIIgvaIAYVIASLLSFPLNLYLAGRL 396
|
..
gi 2205656897 415 VK 416
Cdd:cd13127 397 IG 398
|
|
| Polysacc_synt |
pfam01943 |
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. ... |
18-286 |
7.03e-12 |
|
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Pssm-ID: 426523 [Multi-domain] Cd Length: 274 Bit Score: 65.79 E-value: 7.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 18 LLQGRFISHIIGFIGSILVIRILEPTDYGILSIAMSLPYTVSIFGNLGVNTAVTRFVAKYKEidlkkaYSMIASGIIFDV 97
Cdd:pfam01943 8 LLLSQLITYLLAFVTLPYLARILGPEGFGLYAFALAFVGLLTIFTDFGFNAALVREIAKYRE------KYELVSLYWLNA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 98 IYGLLLSVIGYLLTPYIvTYIYNKPEIIPYSEFASFFTIPYWASSSIFSGIL-GLELTKHNSEMWIIHYSVQTILSVGLA 176
Cdd:pfam01943 82 LLVKLVLVLLFLLLPLI-AAFLGLPELAVLYRILALMFLLLPGVVQFRRGLFqGLERMKYALISQIVESLSRVILVFIAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 177 LSFLRVYGVIISYIIGYTAIVIYGIVILKRK--SLLGKPSINTIKELVVFGFPLVLPSLGSSVSGIYTTSLVNRFLSIFE 254
Cdd:pfam01943 161 FLPGDIVAALLYQVLAALVGGIIALAVLRKIfrPRFVFPSLKLVRKLLSFGAPLFISSLAISLYTYIDSILLGLLLGAGA 240
|
250 260 270
....*....|....*....|....*....|...
gi 2205656897 255 ISNLTASSKLGTLFDTILNP-LSYALQPTLSKL 286
Cdd:pfam01943 241 VGIYNAAYQLLVAIQGLLNPiVTAVLFPVFSKL 273
|
|
| SpoVB |
COG5841 |
Stage V sporulation protein SpoVB/SpoIIIF, required for spore cortex synthesis [Cell cycle ... |
23-453 |
3.52e-10 |
|
Stage V sporulation protein SpoVB/SpoIIIF, required for spore cortex synthesis [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444543 [Multi-domain] Cd Length: 532 Bit Score: 62.10 E-value: 3.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 23 FISHIIGFIGSILVIRILEPTDYGILSIAMSLPYTVSIFGNLGVNTAVTRFVAKYKEI-DLKKAYSMIASGIIFDVIYGL 101
Cdd:COG5841 18 LISKILGAIYRIPLQNIIGDEGFGLYQMAYPIYGLFLTLATAGIPVAISKLVAEYNALgDYKGARRIFRVSLLLLLILGL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 102 LLSVIGYLLTPYIVTYIYNKPEIIpYSEFASFFTIPYWASSSIFSGIL-GLELTKHNSEMWIIHYSVQTILSVGLALSFL 180
Cdd:COG5841 98 VFFLLLFFGAPFIARLLLGDPRAY-YSLRALAPALLIVPVMSVLRGYFqGLQNMTPTAVSQVIEQIVRVIFILLLAYLLL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 181 R----------VYGVIISYIIGYTAIVIYGIVILKRKSLLGKPSINT--------IKELVVFGFPLVLPSLGSSVSGIYT 242
Cdd:COG5841 177 PygleyaaagaTFGAVIGALAGLLVLLYYYRKRKKKLKRLLEKSKTKskesskdiLKELLRIAIPITLSSLVLPLFQLID 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 243 TSLVNRFLSIFEISNLTASSKLGTLFD----------TILNPLSYALQPTLSKL--DKNKHDITKVTNELYKLNIILQLP 310
Cdd:COG5841 257 SFTVPRRLQAAGLSASEATSLYGILSGmaqplvnlptVLATALATSLVPAISEAfaKKDRKLVRRRINQALRLTLLIGLP 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 311 ILISVEYLAYQIIYILAGTQYTLAPLLLRLSLINPLITTAAGASIINSLllfqGYSKLVARINLINIIFYVLLLFFLLPN 390
Cdd:COG5841 337 AAVGLAVLAEPINTLLFGNPEGGGILAILAPSAIFLSLQQVTTGILQGL----GKQKIPVINLLIGLLVKIILNYLLVPL 412
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2205656897 391 FSYIGYFISNWLGWIPGYIISLSFVKKNYNYKLPIKD-VMKIYLVTSIFLLPVLFVNNIFGIVL 453
Cdd:COG5841 413 FGIYGAALATVIGYLVAAILNLAALKKYTGFKLDLRRrLLKPLLASLIMGIVVLLLYRLLSLFL 476
|
|
| Polysacc_synt_3 |
pfam13440 |
Polysaccharide biosynthesis protein; |
38-332 |
1.46e-08 |
|
Polysaccharide biosynthesis protein;
Pssm-ID: 404342 [Multi-domain] Cd Length: 293 Bit Score: 56.06 E-value: 1.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 38 RILEPTDYGILSIAMSLPYTVSIFGNLGVNTAVTRfVAKYKEIDLKKAYSmiasgiiFDVIYGLLLSVIGYLLTPYIVTY 117
Cdd:pfam13440 4 RLLSPEDFGVVAIATVVISFANIFVDMGFSSALIQ-KKDITETDYSTVFT-------FNLIFGALIYLILFALAPLIASF 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 118 iYNKPEIIPYSEFASfFTIPYWASSSIFSGILGLELT-KHNSEMWIIHYSVQTILSVGLALSFLRVYGVIISYIIGYTAI 196
Cdd:pfam13440 76 -YNQPELVPVLRVLA-LVLILNGLSSVQTALLRRDLRfKKLFKITLTSSVIGGIVGIVLAYLGFGVWALVIGTLAQQLLS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 197 VIYGIVILKRKSLLgKPSINTIKELVVFGFPLVLPSLGSSVSGIYTTSLVNRFLSIFEISNLTASSKLGTLFDTILN-PL 275
Cdd:pfam13440 154 LVLLWLASDWRPRL-TFSLKVIKELFSFGSWLLLSNLLNYLARNLDNLIIGKVLGTAALGLYSVAYRLALLPTANITsVI 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2205656897 276 SYALQPTLSKLDKNKHDITKVTNELYKLNIILQLPILISVEYLAYQIIYILAGTQYT 332
Cdd:pfam13440 233 TKVLFPALSRIQDDKAKLRELYLRVLRLIAFIVFPIMAGLAVVAEPLVLVLLGSQWL 289
|
|
| MATE_yoeA_like |
cd13138 |
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to ... |
23-418 |
3.38e-07 |
|
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240543 [Multi-domain] Cd Length: 431 Bit Score: 52.46 E-value: 3.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 23 FISHIIGFIGSILVIRILEPTDYGILSIAMSLPYTVSIFGnLGVNTAVTRFVAKYK-EIDLKKAYSMIASGIIFDVIYGL 101
Cdd:cd13138 17 LLQQLYNLVDLLIVGQFLGVAALAAVSNGSPIIFLLTAIG-MGLSMGGTILISQYIgAKDEEKAKKAVGTLLVLFLILGI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 102 LLSVIGYLLTPYIVTYIYNKPEIIPYSE-------FASFFTIPYWASSSIFSGIlgleltkHNSEMWIIHYSVQTILSVG 174
Cdd:cd13138 96 VLTILGLLFAPPILRLMNTPAEILELAVsylricfLGIPFIFGYNAYSAILRGL-------GDSKTPLYFVIIACVLNII 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 175 LALSF-----LRVYGVIISYIIGYTAIVIYGIVILKRKSLLGKPSI-------NTIKELVVFGFPLVLPSLGSSVSGIYT 242
Cdd:cd13138 169 LDLLFiavfhMGVAGAALATVIAQAISVLLALYYLRKKKLPFKLSLkdfrfdkEILKEILKIGLPSALQQSLVSISFLII 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 243 TSLVNRFLSIFeISNLTASSKLGTLfdtILNPLSyALQPTLSKL------DKNKHDITKVTNELYKLNIILQLPILISVE 316
Cdd:cd13138 249 NSIVNSYGVVA-SAAYGIANKINSF---AFLPPS-AIGQAVSTFvaqnigAGKIERAKKGLRTGIIISLIIGLIIILLVF 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 317 YLAYQIIYILAGTQYTLAPLLLRLSLINPLITTAAGASIINSLLLFQGYSKLVARINLINIIFY---VLLLFFLLPNFSY 393
Cdd:cd13138 324 FFAPQLLGLFTSDPEVIEIGAEYLRIYSIDYILFGILFVFNGLFRGLGKTKFPMIISILRLWLVripLAYLLSRLTGLGL 403
|
410 420
....*....|....*....|....*
gi 2205656897 394 IGYFISNWLGWIPGYIISLSFVKKN 418
Cdd:cd13138 404 FGIWLAMPISNILSAIICIIYYRKG 428
|
|
| MATE_like_10 |
cd13125 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ... |
23-326 |
4.60e-07 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides, such as O-antigen. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240530 [Multi-domain] Cd Length: 409 Bit Score: 52.16 E-value: 4.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 23 FISHIIGFIGSILVIRILEPTDYGILSIAMSLPYTVSIFGNLGVNTAVTRFVAKYKEiDLKKAYSMIASGIIFDVIYGLL 102
Cdd:cd13125 11 LIKILAGLIINKVVAVYLGPSGVALLGQLQNFVTILQTIAGGGINNGVVKYTAEYKD-DEEKLARVWSTAFRITLILSIL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 103 LSVIGYLLTPYIVTYIYNKPEiiPYSEFASF-FTIPYWASSSIFSGIL-GLELTKHNSEMWIIHYSVQTILSVGLaLSFL 180
Cdd:cd13125 90 GGLLLLLFSKPLSSLLFGDID--YSWVFILLgLALPLFALNNLLLAILnGLKEIKRYALINIISSLIGLLVSVLL-VYFY 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 181 RVYGVIISYIIGYTAIVIYGIVIL------KRKSLLGKPSINTIKELVVFGFPLVLPSLGSSVSGIYTTSLVNRFLSIFE 254
Cdd:cd13125 167 GLKGALLALVLNQSLIFLVTLIYSrkqpwfKLKYLWGRLDKDIIKKLLKFSLMALVSALSLPLSQIIVRNILIRQLGWEA 246
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2205656897 255 ISNLTASSKLGTLF-DTILNPLSYALQPTLSKLDKNKhDITKVTNELYKLNIILQLPILISVEYLAYQIIYIL 326
Cdd:cd13125 247 AGYWQAVWKISDVYlGFITTALSTYYLPRLSAIKDNK-ELKREVNKQLKVILPLVAIGALLIYLLRDLIIQIL 318
|
|
| MATE_SpoVB_like |
cd13124 |
Stage V sporulation protein B, also known as Stage III sporulation protein F, and related ... |
23-421 |
6.93e-07 |
|
Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins; The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240529 [Multi-domain] Cd Length: 434 Bit Score: 51.70 E-value: 6.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 23 FISHIIGFIGSILVIRILEPTDYGILSIAMSLPYTVSIFGNLGVNTAVTRFVAKYKEI-DLKKAYSMIASGIIFDVIYGL 101
Cdd:cd13124 8 LISKILGAIYRIPLQNIIGDEGMGLYQMAYPIYGIFLTLATAGIPVAISKLVAEYNALgDYKGARRIFRVSLILLLILGL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 102 LLSVIGYLLTPYIVTYIYNKPEIIpYSEFASFFTIPYWASSSIFSGIL-GLELTKHNSEMWIIHYSVQTILSVGLALSFL 180
Cdd:cd13124 88 VFFLLLFFGAPFLAQLLLGDPRLA-PVIRALAPAILIVPLLSVLRGYFqGLQNMTPTAVSQVIEQIVRVIVILVLAYLLL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 181 RV-----YGVIISYI---IGYTAIVIYGIVILKRKSLLGKPSI-----------NTIKELVVFGFPLVLPSLGSSVSGIY 241
Cdd:cd13124 167 PVggglyYAAAGATFgavIGALAGLLVLLYYYRKKRRELKRLLrksprskistkEILKELLSYAIPITLSSLILPLLQLI 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 242 TTSLVNRFLSIFEISNLTASSKLGTLFD----------TILNPLSYALQPTLSKL--DKNKHDITKVTNELYKLNIILQL 309
Cdd:cd13124 247 DSFTVPRRLQAAGLSESEATALYGILTGraqplvqlptVIATALSTSLVPAISEAyaKGDKKELRRRINQALRLTLLIGL 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 310 PILISVEYLAYQIIYILAGTQYTLAPLLLRLSLINPLITTAAGASIINSLllfqGYSKLVARINLINIIFYVLLLFFLLP 389
Cdd:cd13124 327 PAAVGLAVLAEPINTLLFGDSEGGLILQILAPSILFLSLQQVTAAILQGL----GKVKIPVINLLIGLLVKIVLNYVLIP 402
|
410 420 430
....*....|....*....|....*....|..
gi 2205656897 390 NFSYIGYFISNWLGWIPGYIISLSFVKKNYNY 421
Cdd:cd13124 403 IFGIYGAAIATVIGFLVAALLNLRALKKLLGF 434
|
|
| MATE_epsE_like |
cd13129 |
Multidrug and toxic compound extrusion family and similar proteins; This model represents a ... |
19-332 |
9.73e-07 |
|
Multidrug and toxic compound extrusion family and similar proteins; This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins, including Ralstonia solanaceraum GMI1000 epsE, which may be involved in exporting exopolysaccharide EPS I, a virulence factor. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240534 [Multi-domain] Cd Length: 411 Bit Score: 50.95 E-value: 9.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 19 LQGRFISHIIGFIGSILVIRILEPTDYGILSIAMSLPYTVSIFGNLGVNTAVTRFVAKYKEIDLKKAYSMIASGIIFDVI 98
Cdd:cd13129 10 LGGLVASRGAVFLTNIMVARSLGKHVFGEFGVIQVTIGLLGTFAGFGLGLAATKVIAETKDVDPERAGRIIGLSILLAVV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 99 YGLLLSVIGYLLTPYIVTYIYNKPEIIPYSEFASFFTIPYwASSSIFSGIL-GLELTKHNSEMWIIHYSVQTILSVGLAL 177
Cdd:cd13129 90 TGALAATVLFLSATWIAIATLNAPHLAELLRIAAIILILT-AFTGAQTGFLsGFEAFRAIARVNIWAGLLLLPLMWIGVY 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 178 sFLRVYGVIISYIIGYTAIVIYGIVILKRKSLLGKPSINT------IKELVVFGFPLVL-PSLGSSVSGIYTTSLVNRFL 250
Cdd:cd13129 169 -IRGLVGAVVILLASAAGNVASNSLILRRECQNQRGPVRTgltwqeLRVLFKFSLPSVLsGSMGSPVHWIALAILVNQPN 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 251 SIFEISNLTASSKLGTLFDTILNPLSYALQPTLSK-LDKNKHDITKVTNELYKLNIILQLPiLISVEYLAYQIIYILAGT 329
Cdd:cd13129 248 GYAELGLFNAANQWRQFITFLPATLGNVALPFLAEnFGNNEGMFRQTFRSALLFGLGLSLP-LGCVFILASQIFAWLYGK 326
|
...
gi 2205656897 330 QYT 332
Cdd:cd13129 327 EYG 329
|
|
| MATE_NorM_like |
cd13137 |
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to ... |
63-249 |
5.48e-06 |
|
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240542 [Multi-domain] Cd Length: 432 Bit Score: 48.66 E-value: 5.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 63 NLGVNTAVTRFVAKYK-EIDLKKAYSMIASGIIFDVIYGLLLSVIGYLLTPYIVTYIYNKPEIIPYSE---FASFFTIPY 138
Cdd:cd13137 53 NMALGTGTVALVSQSYgAGDYERARRALGQSLLLALLLSLPLALLGLLFAEPLLRLLGADPEVIALALtylRIVLLGIPF 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 139 WASSSIFSGIL-GLELTKhnSEMWIIhySVQTILSVGLALSF---------LRVYGVIISYIIGYTAIVIYGIVILKRKS 208
Cdd:cd13137 133 FFLSLVGNAALrGAGDTK--TPMYIM--IIVNVLNIVLDYVLifglwgfpgLGVAGAALATVISRVVGALLLLFLLLRGR 208
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2205656897 209 LLGKPSI-------NTIKELVVFGFPLVLPSLGSSVSGIYTTSLVNRF 249
Cdd:cd13137 209 LPIKISFkgfrldrKIIKKLLRIGLPAGLEQLLRSLGFLVLLAIVASY 256
|
|
| NorM |
COG0534 |
Na+-driven multidrug efflux pump, DinF/NorM/MATE family [Defense mechanisms]; |
48-249 |
8.25e-06 |
|
Na+-driven multidrug efflux pump, DinF/NorM/MATE family [Defense mechanisms];
Pssm-ID: 440300 [Multi-domain] Cd Length: 427 Bit Score: 48.22 E-value: 8.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 48 LSIAMSLPYTVSIFGNlGVNTAVTRFVAKYK-EIDLKKAYSMIASGIIFDVIYGLLLSVIGYLLTPYIVTYIYNKPEIIP 126
Cdd:COG0534 46 VGLAFPIFFLLIALGI-GLGVGGTALVAQALgAGDREEARRVLGQALLLALLLGLLLTLLGLLFAPPLLRLLGADPEVLA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 127 YSE---FASFFTIPYWASSSIFSGIL-GLELTKHNseMWIIhySVQTILSVGLALSF-----LRVYGVIISYIIGYTAIV 197
Cdd:COG0534 125 LARdylRIILLGLPFLLLFNVLNGILrGLGDTKTP--MIIM--LIGNVLNIVLDPLLifgggLGVAGAALATVISQAVSA 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2205656897 198 IYGIVILKRKSLL-------GKPSINTIKELVVFGFPLVLPSLGSSVSGIYTTSLVNRF 249
Cdd:COG0534 201 LLLLYYLFRKRSLlrlrlrdLRPDRKILKRILRIGLPAGLQQLAESLGFLVLNALVARL 259
|
|
| MATE_like |
cd12082 |
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane ... |
21-327 |
2.69e-05 |
|
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240527 [Multi-domain] Cd Length: 420 Bit Score: 46.55 E-value: 2.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 21 GRFISHIIGFIGSILVIRILEpTDYGILSIAMSLPYTVSIFGNlGVNTAVTRFVAKYK-EIDLKKAYSMIASGIIFDVIY 99
Cdd:cd12082 7 SMLLQTLYNLVDTFFLGRLLG-DALAAVGLAFPLIALLIALGV-GLSVGTSALISQAIgAGDEEKARRVLVQSIVLAILL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 100 GLLLSVIGYLLTPYIVTYIYNKPEIIPYSEFASFFTIPYWASSSIFSGILGLELTKHNSEMWIIHYSVQTILSVGLALSF 179
Cdd:cd12082 85 GLLLAALLLFFSPLILSLLGAEEEVIELAATYLTILILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILLDPLL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 180 LR--------VYGVIISYIIGYTAIVIYGIV-------ILKRKSLLGKPSINTIKELVVFGFPLVLPSLGSSVSGIYTTS 244
Cdd:cd12082 165 IFglgppelgIAGAALATVISYVIGALLLLIylrkgkkILKFKLSLLKPDLELLRRLLRIGLPSAIQNSLLSLGLLIIVA 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 245 LVNRFLSIFEISNLTASSKLGTLFDTILNPLSYALQPTLSKL--DKNKHDITKVTNELYKLNIILQLPILISVEYLAYQI 322
Cdd:cd12082 245 IVAAFGGAAALAAYTVAFRIASLAFMPALGLAQAALPVVGQNlgAGNFDRARRITWVALLIGLLIGAVLGLLILLFPEPI 324
|
....*
gi 2205656897 323 IYILA 327
Cdd:cd12082 325 LSLFT 329
|
|
| matE |
TIGR00797 |
putative efflux protein, MATE family; The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A. ... |
40-253 |
6.43e-03 |
|
putative efflux protein, MATE family; The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS. [Transport and binding proteins, Other]
Pssm-ID: 273273 [Multi-domain] Cd Length: 342 Bit Score: 38.77 E-value: 6.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 40 LEPTDYGILSIAMSLpYTVSIFGNLGVNTAVTRFVAK-YKEIDLKKAYSMIASGIIFDVIYGLLLSVIGYLLTPYIVTYI 118
Cdd:TIGR00797 23 LGPVDLAAVSLGSSV-FMFLFSILMGLGTATTALVAQaVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLM 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656897 119 YNKPEII----PYSEFASFFTIPYWASSSIFSGILGLELTKHNSEMWIIHYSVQTILSVGL---ALSFLRVYGVIISYII 191
Cdd:TIGR00797 102 GADGEVAelaqDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILifgKFGFLGIVGAALATVI 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2205656897 192 GYTAIVIYGIVILKRKSLLG-------KPSINTIKELVVFGFPLVLPSLGSSVSGIYTTSLVNRFLSIF 253
Cdd:TIGR00797 182 SYWLMFLLLLYYIKKAKKIGlkwegllKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIA 250
|
|
| |
