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Conserved domains on  [gi|2205656994|ref|WP_240781923|]
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MULTISPECIES: PaREP1 family protein [Saccharolobus]

Protein Classification

PaREP1 family protein( domain architecture ID 10531866)

PaREP1 family protein is an alpha helical protein that may be related to HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domains

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PaREP1 pfam05942
Archaeal PaREP1/PaREP8 family; This family consists of several archaeal PaREP1 and PaREP8 ...
 9-112 1.67e-24

Archaeal PaREP1/PaREP8 family; This family consists of several archaeal PaREP1 and PaREP8 proteins the function of this family is unknown.


:

Pssm-ID: 377572  Cd Length: 115  Bit Score: 89.63  E-value: 1.67e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656994   9 REWIREADEVLEKGDIVQASEKYYKAVEEAIKSLSRKSNLNVL-KRLRYGRWSSELLFDAV----YELGVNEIKEIWYIA 83
Cdd:pfam05942   7 EKELREAEELLEKGDLRQASEKAYKAAEAAVKALAEKNNLKLAeKARGKGRWSHRLLLKAVarllEELGDEEVRDLWSLA 86

                          90       100
                  ....*....|....*....|....*....
gi 2205656994  84 WELHIDGFHEMKLTEERLRLVKDKIKKII 112
Cdd:pfam05942  87 LDLHVYGFHEAKLDPSDVESREEAVEDLV 115
 
Name Accession Description Interval E-value
PaREP1 pfam05942
Archaeal PaREP1/PaREP8 family; This family consists of several archaeal PaREP1 and PaREP8 ...
 9-112 1.67e-24

Archaeal PaREP1/PaREP8 family; This family consists of several archaeal PaREP1 and PaREP8 proteins the function of this family is unknown.


Pssm-ID: 377572  Cd Length: 115  Bit Score: 89.63  E-value: 1.67e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656994   9 REWIREADEVLEKGDIVQASEKYYKAVEEAIKSLSRKSNLNVL-KRLRYGRWSSELLFDAV----YELGVNEIKEIWYIA 83
Cdd:pfam05942   7 EKELREAEELLEKGDLRQASEKAYKAAEAAVKALAEKNNLKLAeKARGKGRWSHRLLLKAVarllEELGDEEVRDLWSLA 86

                          90       100
                  ....*....|....*....|....*....
gi 2205656994  84 WELHIDGFHEMKLTEERLRLVKDKIKKII 112
Cdd:pfam05942  87 LDLHVYGFHEAKLDPSDVESREEAVEDLV 115
 
Name Accession Description Interval E-value
PaREP1 pfam05942
Archaeal PaREP1/PaREP8 family; This family consists of several archaeal PaREP1 and PaREP8 ...
 9-112 1.67e-24

Archaeal PaREP1/PaREP8 family; This family consists of several archaeal PaREP1 and PaREP8 proteins the function of this family is unknown.


Pssm-ID: 377572  Cd Length: 115  Bit Score: 89.63  E-value: 1.67e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2205656994   9 REWIREADEVLEKGDIVQASEKYYKAVEEAIKSLSRKSNLNVL-KRLRYGRWSSELLFDAV----YELGVNEIKEIWYIA 83
Cdd:pfam05942   7 EKELREAEELLEKGDLRQASEKAYKAAEAAVKALAEKNNLKLAeKARGKGRWSHRLLLKAVarllEELGDEEVRDLWSLA 86

                          90       100
                  ....*....|....*....|....*....
gi 2205656994  84 WELHIDGFHEMKLTEERLRLVKDKIKKII 112
Cdd:pfam05942  87 LDLHVYGFHEAKLDPSDVESREEAVEDLV 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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