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Conserved domains on  [gi|2209803072|ref|WP_241760823|]
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MULTISPECIES: iron ABC transporter permease [Corynebacterium]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
15-315 1.62e-65

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 208.39  E-value: 1.62e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  15 SLALGARSIPFSDVLAALRGQPG--IASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFGINVGASLAA 92
Cdd:COG0609     1 SLSLGAVPISLSDVLRALLGPDGdpTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  93 AIALGWWGWQSPFAFSLAAIIGAAVTMLVVTAVGRgRAGDVDPLRLILAGVAIGAVCEGLSSALILI-DPHSFARIRAWV 171
Cdd:COG0609    81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLAR-RGGGLSPLRLVLAGVAVSALFSALTSLLLLLaDPEQLRSIVFWL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 172 TGSVDVASWTPVAITSGGLAVGVVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAAAGVIVFVGL 251
Cdd:COG0609   160 MGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGL 239
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2209803072 252 VIPHVVRLCGIYEERAQLAASAVVGPLFLLGADIVGRFLIA-AELPAGVAVSLIGAPVLIALSHR 315
Cdd:COG0609   240 VVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILApAELPVGIVTALIGAPFFLYLLRR 304
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
15-315 1.62e-65

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 208.39  E-value: 1.62e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  15 SLALGARSIPFSDVLAALRGQPG--IASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFGINVGASLAA 92
Cdd:COG0609     1 SLSLGAVPISLSDVLRALLGPDGdpTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  93 AIALGWWGWQSPFAFSLAAIIGAAVTMLVVTAVGRgRAGDVDPLRLILAGVAIGAVCEGLSSALILI-DPHSFARIRAWV 171
Cdd:COG0609    81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLAR-RGGGLSPLRLVLAGVAVSALFSALTSLLLLLaDPEQLRSIVFWL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 172 TGSVDVASWTPVAITSGGLAVGVVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAAAGVIVFVGL 251
Cdd:COG0609   160 MGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGL 239
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2209803072 252 VIPHVVRLCGIYEERAQLAASAVVGPLFLLGADIVGRFLIA-AELPAGVAVSLIGAPVLIALSHR 315
Cdd:COG0609   240 VVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILApAELPVGIVTALIGAPFFLYLLRR 304
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
7-315 2.20e-54

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 179.65  E-value: 2.20e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072   7 ILGIGVALSLALGARSIPFSDVLAALRGQPG-IASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFGIN 85
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLGGDDsLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  86 VGASLAAAIALGWWGWQSPFAFSLAAIIGAAVTMLVVTAVGRGRAGdVDPLRLILAGVAIGAVCEGLSSALI-LIDPHSF 164
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRGG-ASPLRLILAGIAVSALLSALTSLLLlLLNPEAL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 165 ARIRAWVTGSVDVASWTPVAITSGGLAVGVVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAAAG 244
Cdd:pfam01032 160 QSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVG 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2209803072 245 VIVFVGLVIPHVVRLCGIYEERAQLAASAVVGPLFLLGADIVGRFLIA-AELPAGVAVSLIGAPVLIALSHR 315
Cdd:pfam01032 240 PIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSpYELPVGIVTALIGAPFFIYLLLR 311
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
5-318 6.28e-54

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 179.52  E-value: 6.28e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072   5 IAILGIGVALSLALGARSIPFSDVLAALRGQPGIA-SSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFG 83
Cdd:PRK10441   17 LLLLIIATALSLLIGAKSLPASVVLEALSGTCQSAdCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLG 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  84 INVGASLAAAIALGWWGWQSPFAFSLAAIIGAAVTMLVVTAVGRGRAGDVDPLRLILAGVAIGAVCEGLSSALILIDPHS 163
Cdd:PRK10441   97 VNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAAVLEGLTSGIALLNPDV 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 164 FARIRAWVTGSVDVASWTPVAITSGGLAVGVVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAAA 243
Cdd:PRK10441  177 YDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAVV 256
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2209803072 244 GVIVFVGLVIPHVVRLCGIYEERAQLAASAVVGPLFLLGADIVGRFLIAAELPAGVAVSLIGAPVLIALSHRAGR 318
Cdd:PRK10441  257 GPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLVPGELRVSVVSAFIGAPVLIFLVRRKTR 331
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
51-312 2.53e-32

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 120.74  E-value: 2.53e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  51 TLVAVCAGCALALAGAVLQIMTRNPLADTGVFGINVGASLAAAIALGWWGWQSPFAFSLAAIIGAAVTMLVVtaVGRGRA 130
Cdd:cd06550     1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLV--LLLASR 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 131 GDVDPLRLILAGVAIGAVCEGLSSALILIDPHSFARIRAWVTGSVDVASWTPVAITSGGLAVGVVLLIVFARHLPPLALG 210
Cdd:cd06550    79 GGLSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFD 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 211 DEAAASLGINLKMTRLGLIAAVTVLAATATAAAGVIVFVGLVIPHVVRLCGIYEERAQLAASAVVGPLFLLGADIVGRFL 290
Cdd:cd06550   159 EDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTL 238
                         250       260
                  ....*....|....*....|..
gi 2209803072 291 IAAELPAGVAVSLIGAPVLIAL 312
Cdd:cd06550   239 LPSELPVGPVTALLGAPYFLYL 260
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
36-318 9.34e-30

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 115.34  E-value: 9.34e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  36 PGIASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFGINVGASLAAAIALgwwGWQSPFAFSLAAIIGa 115
Cdd:TIGR03869  42 SRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVL---VLGVAVLLPVAAFAG- 117
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 116 AVTMLVVTAVGRGRAGDVDPLRLILAGVAIGAVCEGLSSALILIDPH--SFARIRAWVTGSVDVASWTPVAITSGGLAVG 193
Cdd:TIGR03869 118 ALLALAATLGLARTLGTLTPTRTILAGLAVSQLCAAVTSFVIFWSATgdSYREILSWLMGSLAGATWGSVAIAGGALLVV 197
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 194 VVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAAAGVIVFVGLVIPHVVRLCGIYEERAQLAASA 273
Cdd:TIGR03869 198 GLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSA 277
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 2209803072 274 VVGPLFLLGADIVGRFLIAA-ELPAGVAVSLIGAPVLIALSHRAGR 318
Cdd:TIGR03869 278 LAGAVFLVWADTLARTVFAPrELPVGIITALIGAPVFAVLLYRSRS 323
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
15-315 1.62e-65

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 208.39  E-value: 1.62e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  15 SLALGARSIPFSDVLAALRGQPG--IASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFGINVGASLAA 92
Cdd:COG0609     1 SLSLGAVPISLSDVLRALLGPDGdpTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  93 AIALGWWGWQSPFAFSLAAIIGAAVTMLVVTAVGRgRAGDVDPLRLILAGVAIGAVCEGLSSALILI-DPHSFARIRAWV 171
Cdd:COG0609    81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLAR-RGGGLSPLRLVLAGVAVSALFSALTSLLLLLaDPEQLRSIVFWL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 172 TGSVDVASWTPVAITSGGLAVGVVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAAAGVIVFVGL 251
Cdd:COG0609   160 MGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGL 239
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2209803072 252 VIPHVVRLCGIYEERAQLAASAVVGPLFLLGADIVGRFLIA-AELPAGVAVSLIGAPVLIALSHR 315
Cdd:COG0609   240 VVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILApAELPVGIVTALIGAPFFLYLLRR 304
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
7-315 2.20e-54

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 179.65  E-value: 2.20e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072   7 ILGIGVALSLALGARSIPFSDVLAALRGQPG-IASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFGIN 85
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLGGDDsLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  86 VGASLAAAIALGWWGWQSPFAFSLAAIIGAAVTMLVVTAVGRGRAGdVDPLRLILAGVAIGAVCEGLSSALI-LIDPHSF 164
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRGG-ASPLRLILAGIAVSALLSALTSLLLlLLNPEAL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 165 ARIRAWVTGSVDVASWTPVAITSGGLAVGVVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAAAG 244
Cdd:pfam01032 160 QSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVG 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2209803072 245 VIVFVGLVIPHVVRLCGIYEERAQLAASAVVGPLFLLGADIVGRFLIA-AELPAGVAVSLIGAPVLIALSHR 315
Cdd:pfam01032 240 PIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSpYELPVGIVTALIGAPFFIYLLLR 311
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
5-318 6.28e-54

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 179.52  E-value: 6.28e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072   5 IAILGIGVALSLALGARSIPFSDVLAALRGQPGIA-SSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFG 83
Cdd:PRK10441   17 LLLLIIATALSLLIGAKSLPASVVLEALSGTCQSAdCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLG 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  84 INVGASLAAAIALGWWGWQSPFAFSLAAIIGAAVTMLVVTAVGRGRAGDVDPLRLILAGVAIGAVCEGLSSALILIDPHS 163
Cdd:PRK10441   97 VNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAAVLEGLTSGIALLNPDV 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 164 FARIRAWVTGSVDVASWTPVAITSGGLAVGVVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAAA 243
Cdd:PRK10441  177 YDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAVV 256
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2209803072 244 GVIVFVGLVIPHVVRLCGIYEERAQLAASAVVGPLFLLGADIVGRFLIAAELPAGVAVSLIGAPVLIALSHRAGR 318
Cdd:PRK10441  257 GPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLVPGELRVSVVSAFIGAPVLIFLVRRKTR 331
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
2-319 7.70e-46

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 158.36  E-value: 7.70e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072   2 VAGIAILGIGVALSLALGARSIPFSDVLAALRGQ-PGIASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTG 80
Cdd:COG4779    27 LVLLLLLLALAVLALTLGDYPLSPGDVLRALLGEgDPGASFVVLELRLPRALAALLVGAALGLSGAIFQSLTRNPLASPD 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  81 VFGINVGASLAAAIALGWWGWqSPFAFSLAAIIGAAVTMLVVTAVGRGRAgdVDPLRLILAGVAIGAVCEGLSSALILI- 159
Cdd:COG4779   107 IIGITAGASAGAVAAIVVLGG-SGLAVALGALAGGLATALLVYLLAWRGG--VSGYRLILVGIGVSAMLTAVNSYLLTRa 183
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 160 DPHSFARIRAWVTGSVDVASWTPVAITSGGLAVGVVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATA 239
Cdd:COG4779   184 DLEDAQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLLLVAVALAAVA 263
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 240 TAAAGVIVFVGLVIPHVV-RLCGiyEERAQLAASAVVGPLFLLGADIVGRFLIA-AELPAGVAVSLIGAPVLIALSHRAG 317
Cdd:COG4779   264 TAAAGPIAFVALAAPQIArRLTR--SPGPPLLPSALVGALLLLAADLVAQHLLApVQLPVGVVTGALGGPYLLWLLIREN 341

                  ..
gi 2209803072 318 RR 319
Cdd:COG4779   342 RR 343
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
5-312 2.28e-40

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 143.84  E-value: 2.28e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072   5 IAILGIGVALSLALGARSIPFSDVLAALrgqpgiASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFGI 84
Cdd:COG4139    19 LLLLLLLFVLSLCAGEVWIPPTQWLSEA------WQLFVWQLRLPRTLAAVLVGASLAVSGAVMQALFENPLAEPGLLGI 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  85 NVGASLAAAIALGWWGWQSPF-AFSLAAIIGAAVTMLVVTAVGRGRagdVDPLRLILAGVAIGAVCEGLSS-ALILIDPH 162
Cdd:COG4139    93 SNGAGVGLVLVVLLGGGLLPPwLLSLAAIAGALLVTLLLLAFARRR---LSNARLLLIGVALGIICSAIMTwAVYFSSSL 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 163 SFARIRAWVTGSVDVASWTPVAITSGGLAVgVVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAA 242
Cdd:COG4139   170 DLRQLMYWMMGSFGGVDWRQLWLLLALLPV-LLWLCLQGKPLNLLLLGENQARQLGLSVHRWRNLLVLATGLLVGVSVAL 248
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2209803072 243 AGVIVFVGLVIPHVVRLCGIYEERAQLAASAVVGPLFLLGADIVGRFLI-AAELPAGVAVSLIGAPVLIAL 312
Cdd:COG4139   249 AGPIGFVGLVVPHLLRLLGTTDHRFLLPACALAGAALLLLADIIARLALsSAELPIGVVTATLGAPVFIWL 319
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
3-315 3.20e-40

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 148.83  E-value: 3.20e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072   3 AGIAILGIGVALSLALGARSIPFSDVLAALRGQ--PGIASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTG 80
Cdd:PRK10577   16 LLALLLLLALALTLTQLSAALPLSQWLQALWGPdaDDLEQLLLHYSRLPRLAIALLVGAALGLAGALLQQVLRNPLASPT 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  81 VFGINVGASLAAAIALGWWGWQSPFAFSLAAIIGAAVTMLVVTAVGRGRAGDvdPLRLILAGVAIGAVCEGLSSALILID 160
Cdd:PRK10577   96 TLGVAAGAQLALVLATLFAPALLALASQLAAFAGGLLAAALVFALAGGKRLS--PLRLVLAGMVVSLYLGALTTLLLLFN 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 161 PHSFARIRAWVTGSVDVASWTPVAITSGGLAVGVVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATAT 240
Cdd:PRK10577  174 EQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALALAVLLSAAVV 253
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2209803072 241 AAAGVIVFVGLVIPHVVRLCGIYEERAQLAASAVVGPLFLLGADIVGRFL---IAAELPAGVAVSLIGAPVLIALSHR 315
Cdd:PRK10577  254 SAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLagvGGELLPTGAVTALIGAPLLLWLLPR 331
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
6-319 6.52e-40

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 148.06  E-value: 6.52e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072   6 AILGIGVALSLALGARSIPFSDVLAALRGQPGIASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFGIN 85
Cdd:PRK10577  356 AWLLALGLLLLLALVVALSFGRDAHGWNWLSGQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGIS 435
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  86 VGASLAAAIALGWWGWQSPFAFSLAAIIGAAVTMLVVTAVGRGraGDVDPLRLILAGVAIGAVCEGLSSALILIDPHSFA 165
Cdd:PRK10577  436 SGAGLGVVLALFLVPGAGFGWLLAAALLGALAALALILLLARR--GGFAPERLLLTGIALSALFTALIQLLLASGDPRAA 513
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 166 RIRAWVTGSVDVASWTPVAITSGGLAVGVVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAAAGV 245
Cdd:PRK10577  514 QLLTWLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVGP 593
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2209803072 246 IVFVGLVIPHVVRLCGIYEERAQLAASAVVGPLFLLGADIVGRFLIA-AELPAGVAVSLIGAPVLIALSHRAGRR 319
Cdd:PRK10577  594 LSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFpYQIPAGLLAALIGAPYFLWLLRRSRRR 668
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
36-317 1.41e-36

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 133.67  E-value: 1.41e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  36 PGIASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFGINVGASLAAAIALGWW-GWQSPFAFSLAAIIG 114
Cdd:PRK11228   40 PTLPEALVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMALTSALSpTPFAGYSLAFIAACG 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 115 AAVTMLVVTAVGRGRAGDVDPLRLILAGVAIGAVCEGLSSALILIDPHSFARIRAWVTGSVDVASWTPVAITSGGLAVGV 194
Cdd:PRK11228  120 GGLSWLLVMTAGGGWRHTHDRNRLILAGIALSALCMALTRITLLLAEDHAYGIFYWLAGGVSHARWQEVWQLLPFVVTAV 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 195 VLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAAAGVIVFVGLVIPHVVRLCGIYEERAQLAASAV 274
Cdd:PRK11228  200 PVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMSML 279
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 2209803072 275 VGPLFLLGADIVGRFL-IAAELPAGVAVSLIGAPVLIALSHRAG 317
Cdd:PRK11228  280 LGATLMLLADLLARALaFPGELPAGAVLALIGAPCFVWLARRRG 323
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
6-319 1.19e-35

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 131.23  E-value: 1.19e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072   6 AILGIGVALSLALGARSIPFSDVLAALrgqpgiASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFGIN 85
Cdd:PRK03784   23 VLLLLALLLSLCAGEQWISPGDWLSPR------GELFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVS 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  86 VGASLAAAIA-LGWWGWQSPFAFSLAAIIGA-AVTMLVVtavGRGRAGDVDPLRLILAGVAIGAVCEGLSS-ALILIDPH 162
Cdd:PRK03784   97 NGAGVALVAAvLLGQGLLPPWALSLCAIAGAlLITLILL---RFARRHRLSTSRLLLAGVALGIICSALMTwAVYFSTSL 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 163 SFARIRAWVTGSVDVASWTPVAITSGGLAVgVVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAA 242
Cdd:PRK03784  174 DLRQLMYWMMGGFGGVDWRQSWLMLALLPV-LIWLCCQGRPLNMLALGEISARQLGLPLWFWRNLLVLATGWLVGVSVAL 252
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2209803072 243 AGVIVFVGLVIPHVVRLCGIYEERAQLAASAVVGPLFLLGADIVGRF-LIAAELPAGVAVSLIGAPVLIALSHRAGRR 319
Cdd:PRK03784  253 AGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLaLASAELPIGVVTATLGAPVFIWLLLRSHRA 330
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
51-312 2.53e-32

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 120.74  E-value: 2.53e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  51 TLVAVCAGCALALAGAVLQIMTRNPLADTGVFGINVGASLAAAIALGWWGWQSPFAFSLAAIIGAAVTMLVVtaVGRGRA 130
Cdd:cd06550     1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLV--LLLASR 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 131 GDVDPLRLILAGVAIGAVCEGLSSALILIDPHSFARIRAWVTGSVDVASWTPVAITSGGLAVGVVLLIVFARHLPPLALG 210
Cdd:cd06550    79 GGLSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFD 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 211 DEAAASLGINLKMTRLGLIAAVTVLAATATAAAGVIVFVGLVIPHVVRLCGIYEERAQLAASAVVGPLFLLGADIVGRFL 290
Cdd:cd06550   159 EDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTL 238
                         250       260
                  ....*....|....*....|..
gi 2209803072 291 IAAELPAGVAVSLIGAPVLIAL 312
Cdd:cd06550   239 LPSELPVGPVTALLGAPYFLYL 260
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
14-315 5.00e-30

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 115.91  E-value: 5.00e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  14 LSLALGARSIPFSDVLAALrgQPGIASSIVW-ERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFGINVGASLAA 92
Cdd:PRK09777   19 LSLRMGVIPLPWRALLTDW--QAGDEHYYVLmEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASLAS 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  93 AIALGWWGWQSPFAFSLAAIIGAAVTMLVVTAVgrgrAGDVDPLRLILAGVAIGAVCEGLSSALILIDPHSFARIRAWVT 172
Cdd:PRK09777   97 VGALLLFPSLPVMWLPLLAFIGGMAGLILLKML----AGTHQPMKLALTGVALSALWASLTDYLMLSRPQDINNALLWLT 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 173 GSVDVASWTPVAITSGGLAVGVVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAAAGVIVFVGLV 252
Cdd:PRK09777  173 GSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTATGVAACGPISFIGLV 252
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2209803072 253 IPHVVRLCGIYEERAQLAASAVVGPLFLLGADIVGRFL-IAAELPAGVAVSLIGAPVLIALSHR 315
Cdd:PRK09777  253 VPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIhPPLELPAGVLTAIIGAPWFFWLLVR 316
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
36-318 9.34e-30

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 115.34  E-value: 9.34e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  36 PGIASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFGINVGASLAAAIALgwwGWQSPFAFSLAAIIGa 115
Cdd:TIGR03869  42 SRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVL---VLGVAVLLPVAAFAG- 117
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 116 AVTMLVVTAVGRGRAGDVDPLRLILAGVAIGAVCEGLSSALILIDPH--SFARIRAWVTGSVDVASWTPVAITSGGLAVG 193
Cdd:TIGR03869 118 ALLALAATLGLARTLGTLTPTRTILAGLAVSQLCAAVTSFVIFWSATgdSYREILSWLMGSLAGATWGSVAIAGGALLVV 197
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 194 VVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAAAGVIVFVGLVIPHVVRLCGIYEERAQLAASA 273
Cdd:TIGR03869 198 GLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSA 277
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 2209803072 274 VVGPLFLLGADIVGRFLIAA-ELPAGVAVSLIGAPVLIALSHRAGR 318
Cdd:TIGR03869 278 LAGAVFLVWADTLARTVFAPrELPVGIITALIGAPVFAVLLYRSRS 323
btuC PRK09535
cobalamin ABC transporter permease BtuC;
36-312 3.61e-28

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 111.77  E-value: 3.61e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  36 PGIASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFGINVGASLAAAIALGWwGWQSPFAFSLAAIIGA 115
Cdd:PRK09535   84 PETAQTIVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVL-PLAVPFGLQAAAFAGA 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 116 AVTMLVVTAVGRgRAGDVDPLRLILAGVAIGAVCEGLSSALILIDPHSFARIRAWVTGSVDVASWTPVAITSGGLAVGVV 195
Cdd:PRK09535  163 LVAAFGVYAIAT-ENGRTPVATLLLAGVAVQTFLGAVISYLLLHSGESLRRAVYWLMGHLHGSTWSDVEVALPVVVVGFV 241
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 196 LLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAAAGVIVFVGLVIPHVVRLCGIYEERAQLAASAVV 275
Cdd:PRK09535  242 VLLAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSALA 321
                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 2209803072 276 GPLFLLGADIVGRfLIAAELPAGVAVSLIGAPVLIAL 312
Cdd:PRK09535  322 GASFLVATDTVAR-SGPAEVPVGIVTAALGAPFFLYL 357
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
5-319 4.18e-23

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 97.47  E-value: 4.18e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072   5 IAILGIGVaLSLALGARSIPFSDVLAALRGQ-PGIASSIVWERRLPRTLVAVCAGCALALAGAVLQIMTRNPLADTGVFG 83
Cdd:PRK10440   17 AACVAAGL-WGLRSGAVTLETSQVFAALMGDaPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMG 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072  84 INVGASLAAAIALGWWGwQSPFAFSLAAIIGAAVTMLVVTAVGRGRAgdVDPLRLILAGVAIGAVCEGLSSALILIDPHS 163
Cdd:PRK10440   96 FNTGAWSGVLVAMVLFG-QDLTAIALAAMAGGIVTSLLVWLLAWRNG--IDTFRLIIIGIGVRAMLVAFNTWLLLKASLE 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2209803072 164 FARIRA-WVTGSVDVASWTPVAITSGGLAVGVVLLIVFARHLPPLALGDEAAASLGINLKMTRLGLIAAVTVLAATATAA 242
Cdd:PRK10440  173 TALTAGlWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLMLVAVVLTAAATAL 252
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2209803072 243 AGVIVFVGLVIPHVV-RLCGiyEERAQLAASAVVGPLFLLGADIVGRFLIAA-ELPAGVAVSLIGAPVLIALSHRAGRR 319
Cdd:PRK10440  253 AGPISFIALVAPHIArRLSG--TARWGLTQAALCGALLLLAADLCAQQLFMPyQLPVGVVTVSLGGIYLIVLLIQESRK 329
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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