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Conserved domains on  [gi|2211962340|ref|WP_242256458|]
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MULTISPECIES: iron ABC transporter permease [Bacillus]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 36-336 9.65e-106

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 312.00  E-value: 9.65e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  36 GLFAGSLSFSLRDILTGI--QDEGSTVHRIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNPLADPGIIGVSSGAGLVA 113
Cdd:COG0609     1 SLSLGAVPISLSDVLRALlgPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 114 IVIMILFPQHMAF-LPLGAFLGAFITAMVIYALSW-QKGAPPSRIVLVGVSINALIGAATSALMLL-HSDKVQSVLPWLA 190
Cdd:COG0609    81 VLAIVLGGGLSALgLPLAAFLGALLAALLVYLLARrGGGLSPLRLVLAGVAVSALFSALTSLLLLLaDPEQLRSIVFWLM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 191 GGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLAGIAVSVSGLIGFVGLV 270
Cdd:COG0609   161 GSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLV 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2211962340 271 VPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIARSWFDPIELPVGILLSFLGGPFFLYLIHRGG 336
Cdd:COG0609   241 VPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 36-336 9.65e-106

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 312.00  E-value: 9.65e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  36 GLFAGSLSFSLRDILTGI--QDEGSTVHRIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNPLADPGIIGVSSGAGLVA 113
Cdd:COG0609     1 SLSLGAVPISLSDVLRALlgPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 114 IVIMILFPQHMAF-LPLGAFLGAFITAMVIYALSW-QKGAPPSRIVLVGVSINALIGAATSALMLL-HSDKVQSVLPWLA 190
Cdd:COG0609    81 VLAIVLGGGLSALgLPLAAFLGALLAALLVYLLARrGGGLSPLRLVLAGVAVSALFSALTSLLLLLaDPEQLRSIVFWLM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 191 GGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLAGIAVSVSGLIGFVGLV 270
Cdd:COG0609   161 GSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLV 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2211962340 271 VPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIARSWFDPIELPVGILLSFLGGPFFLYLIHRGG 336
Cdd:COG0609   241 VPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 28-334 4.71e-91

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 274.79  E-value: 4.71e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  28 LTILGLFYGLFAGSLSFSLRDILTGIQ-DEGSTVHRIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNPLADPGIIGVS 106
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLgGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 107 SGAGLVAIVIMILFP-QHMAFLPLGAFLGAFITAMVIYALS-WQKGAPPSRIVLVGVSINALIGAATSALMLL-HSDKVQ 183
Cdd:pfam01032  81 SGAALGAVLAILLGGsLSLFALPLAAFIGALLAALLVYFLSrGRGGASPLRLILAGIAVSALLSALTSLLLLLlNPEALQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 184 SVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLAGIAVSVSGL 263
Cdd:pfam01032 161 SILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGP 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2211962340 264 IGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIARSWFDPIELPVGILLSFLGGPFFLYLIHR 334
Cdd:pfam01032 241 IGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
16-337 8.68e-70

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 229.73  E-value: 8.68e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  16 KKRWIIAVSLVVLTILGLFYGLFAGSLSFSLRdILTGIQDEgstvhrIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRN 95
Cdd:PRK10577  352 RRVLAWLLALGLLLLLALVVALSFGRDAHGWN-WLSGQLLD------ALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRN 424

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  96 PLADPGIIGVSSGAGLVAIVIMILFPQH-MAFLPLGAFLGAFITAMVIYALSWQKGAPPSRIVLVGVSINALIGAATSAL 174
Cdd:PRK10577  425 PLASPEVLGISSGAGLGVVLALFLVPGAgFGWLLAAALLGALAALALILLLARRGGFAPERLLLTGIALSALFTALIQLL 504

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 175 MLLHSDKVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLA 254
Cdd:PRK10577  505 LASGDPRAAQLLTWLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLT 584

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 255 GIAVSVSGLIGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIARSWFDPIELPVGILLSFLGGPFFLYLIHR 334
Cdd:PRK10577  585 AAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRR 664


                  ...
gi 2211962340 335 GGK 337
Cdd:PRK10577  665 SRR 667
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 61-335 4.38e-58

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 190.45  E-value: 4.38e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  61 HRIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNPLADPGIIGVSSGAGLVAIVIMILfpQHMAFLPLGAFLGAFITAM 140
Cdd:TIGR03869  46 DAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVL--GVAVLLPVAAFAGALLALA 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 141 VIYALSWQKGA-PPSRIVLVGVSINALIGAATSALMLLHS--DKVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFF 217
Cdd:TIGR03869 124 ATLGLARTLGTlTPTRTILAGLAVSQLCAAVTSFVIFWSAtgDSYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLA 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 218 GIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLAGIAVSVSGLIGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGGIL 297
Cdd:TIGR03869 204 SGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVF 283

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 2211962340 298 LVFADAIARSWFDPIELPVGILLSFLGGPFFLYLIHRG 335
Cdd:TIGR03869 284 LVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRS 321
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 72-332 4.92e-56

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 183.14  E-value: 4.92e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  72 VLVGFIVGTCLATSGALLQGVMRNPLADPGIIGVSSGAGL-VAIVIMILFPQHMAFLPLGAFLGAFITAMVIYALSWQKG 150
Cdd:cd06550     1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLgVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 151 APPSRIVLVGVSINALIGAATSALMLLHSDKVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDE 230
Cdd:cd06550    81 LSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDED 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 231 MAKLLGHNVERSRFYLIVVSTLLAGIAVSVSGLIGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIARsWFD 310
Cdd:cd06550   161 LAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSR-TLL 239

                         250       260
                  ....*....|....*....|..
gi 2211962340 311 PIELPVGILLSFLGGPFFLYLI 332
Cdd:cd06550   240 PSELPVGPVTALLGAPYFLYLL 261
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 36-336 9.65e-106

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 312.00  E-value: 9.65e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  36 GLFAGSLSFSLRDILTGI--QDEGSTVHRIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNPLADPGIIGVSSGAGLVA 113
Cdd:COG0609     1 SLSLGAVPISLSDVLRALlgPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 114 IVIMILFPQHMAF-LPLGAFLGAFITAMVIYALSW-QKGAPPSRIVLVGVSINALIGAATSALMLL-HSDKVQSVLPWLA 190
Cdd:COG0609    81 VLAIVLGGGLSALgLPLAAFLGALLAALLVYLLARrGGGLSPLRLVLAGVAVSALFSALTSLLLLLaDPEQLRSIVFWLM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 191 GGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLAGIAVSVSGLIGFVGLV 270
Cdd:COG0609   161 GSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLV 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2211962340 271 VPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIARSWFDPIELPVGILLSFLGGPFFLYLIHRGG 336
Cdd:COG0609   241 VPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 28-334 4.71e-91

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 274.79  E-value: 4.71e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  28 LTILGLFYGLFAGSLSFSLRDILTGIQ-DEGSTVHRIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNPLADPGIIGVS 106
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLgGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 107 SGAGLVAIVIMILFP-QHMAFLPLGAFLGAFITAMVIYALS-WQKGAPPSRIVLVGVSINALIGAATSALMLL-HSDKVQ 183
Cdd:pfam01032  81 SGAALGAVLAILLGGsLSLFALPLAAFIGALLAALLVYFLSrGRGGASPLRLILAGIAVSALLSALTSLLLLLlNPEALQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 184 SVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLAGIAVSVSGL 263
Cdd:pfam01032 161 SILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGP 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2211962340 264 IGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIARSWFDPIELPVGILLSFLGGPFFLYLIHR 334
Cdd:pfam01032 241 IGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 18-339 2.81e-76

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 238.10  E-value: 2.81e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  18 RWIIAVSLVVLTILGLFYGLFAGSLSFSLRDILTGIQDEGSTVHR-IVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNP 96
Cdd:COG4779    22 ALLVTLVLLLLLLALAVLALTLGDYPLSPGDVLRALLGEGDPGASfVVLELRLPRALAALLVGAALGLSGAIFQSLTRNP 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  97 LADPGIIGVSSGAGLVAIVIMILFPQHMAFLPLGAFLGAFITAMVIYALSWQKGAPPSRIVLVGVSINALIGAATSALML 176
Cdd:COG4779   102 LASPDIIGITAGASAGAVAAIVVLGGSGLAVALGALAGGLATALLVYLLAWRGGVSGYRLILVGIGVSAMLTAVNSYLLT 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 177 LHS-DKVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLAG 255
Cdd:COG4779   182 RADlEDAQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLLLVAVALAA 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 256 IAVSVSGLIGFVGLVVPHMLRLLVGNDYKYLLPlSCLGGGILLVFADAIARSWFDPIELPVGILLSFLGGPFFLYLIHRG 335
Cdd:COG4779   262 VATAAAGPIAFVALAAPQIARRLTRSPGPPLLP-SALVGALLLLAADLVAQHLLAPVQLPVGVVTGALGGPYLLWLLIRE 340


                  ....
gi 2211962340 336 GKQR 339
Cdd:COG4779   341 NRRG 344
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
16-337 8.68e-70

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 229.73  E-value: 8.68e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  16 KKRWIIAVSLVVLTILGLFYGLFAGSLSFSLRdILTGIQDEgstvhrIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRN 95
Cdd:PRK10577  352 RRVLAWLLALGLLLLLALVVALSFGRDAHGWN-WLSGQLLD------ALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRN 424

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  96 PLADPGIIGVSSGAGLVAIVIMILFPQH-MAFLPLGAFLGAFITAMVIYALSWQKGAPPSRIVLVGVSINALIGAATSAL 174
Cdd:PRK10577  425 PLASPEVLGISSGAGLGVVLALFLVPGAgFGWLLAAALLGALAALALILLLARRGGFAPERLLLTGIALSALFTALIQLL 504

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 175 MLLHSDKVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLA 254
Cdd:PRK10577  505 LASGDPRAAQLLTWLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLT 584

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 255 GIAVSVSGLIGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIARSWFDPIELPVGILLSFLGGPFFLYLIHR 334
Cdd:PRK10577  585 AAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRR 664


                  ...
gi 2211962340 335 GGK 337
Cdd:PRK10577  665 SRR 667
btuC PRK09535
cobalamin ABC transporter permease BtuC;
58-334 5.06e-68

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 217.31  E-value: 5.06e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  58 STVHRIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNPLADPGIIGVSSGAGLVAiVIMILFPQHMAF-LPLGAFLGAF 136
Cdd:PRK09535   85 ETAQTIVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGA-VAAIVLPLAVPFgLQAAAFAGAL 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 137 ITAMVIYALSWQKG-APPSRIVLVGVSINALIGAATSALMLLHSDKVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILA 215
Cdd:PRK09535  164 VAAFGVYAIATENGrTPVATLLLAGVAVQTFLGAVISYLLLHSGESLRRAVYWLMGHLHGSTWSDVEVALPVVVVGFVVL 243

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 216 FFGIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLAGIAVSVSGLIGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGG 295
Cdd:PRK09535  244 LAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSALAGA 323

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2211962340 296 ILLVFADAIARSwfDPIELPVGILLSFLGGPFFLYLIHR 334
Cdd:PRK09535  324 SFLVATDTVARS--GPAEVPVGIVTAALGAPFFLYLLRT 360
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 17-339 1.20e-62

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 202.39  E-value: 1.20e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  17 KRWIIAvsLVVLTILGLFYGLFAGSLSFSLRDILTGIQDegstvhRIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNP 96
Cdd:COG4139    12 RRWLLL--LLLLLLLLFVLSLCAGEVWIPPTQWLSEAWQ------LFVWQLRLPRTLAAVLVGASLAVSGAVMQALFENP 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  97 LADPGIIGVSSGAGLVAIVIMILFPQHMAF--LPLGAFLGAFITAMVIYALSwQKGAPPSRIVLVGVSINALIGAATSAL 174
Cdd:COG4139    84 LAEPGLLGISNGAGVGLVLVVLLGGGLLPPwlLSLAAIAGALLVTLLLLAFA-RRRLSNARLLLIGVALGIICSAIMTWA 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 175 MLLHSD-KVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFFGiKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLL 253
Cdd:COG4139   163 VYFSSSlDLRQLMYWMMGSFGGVDWRQLWLLLALLPVLLWLCLQG-KPLNLLLLGENQARQLGLSVHRWRNLLVLATGLL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 254 AGIAVSVSGLIGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIARSWFDPIELPVGILLSFLGGPFFLYLIH 333
Cdd:COG4139   242 VGVSVALAGPIGFVGLVVPHLLRLLGTTDHRFLLPACALAGAALLLLADIIARLALSSAELPIGVVTATLGAPVFIWLLL 321


                  ....*.
gi 2211962340 334 RGGKQR 339
Cdd:COG4139   322 RRRKIR 327
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 17-339 2.94e-60

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 196.33  E-value: 2.94e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  17 KRWIIAvsLVVLTILGLFYGLFAGSLSFSLRDILTGIQdegstvHRIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNP 96
Cdd:PRK03784   15 RRWLLG--LSVLLLLALLLSLCAGEQWISPGDWLSPRG------ELFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENP 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  97 LADPGIIGVSSGAGLVAIVIMILFPQHMAF--LPLGAFLGAFITAMVIYALSWQKGAPPSRIVLVGVSINALIGAATSAL 174
Cdd:PRK03784   87 LAEPGLLGVSNGAGVALVAAVLLGQGLLPPwaLSLCAIAGALLITLILLRFARRHRLSTSRLLLAGVALGIICSALMTWA 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 175 MLLHSD-KVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFFGiKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLL 253
Cdd:PRK03784  167 VYFSTSlDLRQLMYWMMGGFGGVDWRQSWLMLALLPVLIWLCCQG-RPLNMLALGEISARQLGLPLWFWRNLLVLATGWL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 254 AGIAVSVSGLIGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIARSWFDPIELPVGILLSFLGGPFFLYLIH 333
Cdd:PRK03784  246 VGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLALASAELPIGVVTATLGAPVFIWLLL 325


                  ....*.
gi 2211962340 334 RGGKQR 339
Cdd:PRK03784  326 RSHRAR 331
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
20-334 4.27e-58

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 190.26  E-value: 4.27e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  20 IIAVSLVVLTILGLFYGlfagSLSFSLRDILTGIQdEGSTVHRIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNPLAD 99
Cdd:PRK09777    8 FITLALAGCALLSLRMG----VIPLPWRALLTDWQ-AGDEHYYVLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLAS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 100 PGIIGVSSGAGLVAIVIMILFPQ-HMAFLPLGAFLGAFITAMVIYALSWQkgAPPSRIVLVGVSINALIGAATSALMLLH 178
Cdd:PRK09777   83 PDILGVNHAASLASVGALLLFPSlPVMWLPLLAFIGGMAGLILLKMLAGT--HQPMKLALTGVALSALWASLTDYLMLSR 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 179 SDKVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLAGIAV 258
Cdd:PRK09777  161 PQDINNALLWLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTATGV 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2211962340 259 SVSGLIGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIARSWFDPIELPVGILLSFLGGPFFLYLIHR 334
Cdd:PRK09777  241 AACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVR 316
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 61-335 4.38e-58

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 190.45  E-value: 4.38e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  61 HRIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNPLADPGIIGVSSGAGLVAIVIMILfpQHMAFLPLGAFLGAFITAM 140
Cdd:TIGR03869  46 DAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVL--GVAVLLPVAAFAGALLALA 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 141 VIYALSWQKGA-PPSRIVLVGVSINALIGAATSALMLLHS--DKVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFF 217
Cdd:TIGR03869 124 ATLGLARTLGTlTPTRTILAGLAVSQLCAAVTSFVIFWSAtgDSYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLA 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 218 GIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLAGIAVSVSGLIGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGGIL 297
Cdd:TIGR03869 204 SGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVF 283

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 2211962340 298 LVFADAIARSWFDPIELPVGILLSFLGGPFFLYLIHRG 335
Cdd:TIGR03869 284 LVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRS 321
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
22-340 9.64e-57

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 195.06  E-value: 9.64e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  22 AVSLVVLTILGLFYGLFAGSLSFSLRDILTGI--QDEGSTVHRIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNPLAD 99
Cdd:PRK10577   14 ALLLALLLLLALALTLTQLSAALPLSQWLQALwgPDADDLEQLLLHYSRLPRLAIALLVGAALGLAGALLQQVLRNPLAS 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 100 PGIIGVSSGAGLVAIVIMILFPQHMAFLPLG-AFLGAFITAMVIYALSWQKGAPPSRIVLVGVSINALIGAATSALMLLH 178
Cdd:PRK10577   94 PTTLGVAAGAQLALVLATLFAPALLALASQLaAFAGGLLAAALVFALAGGKRLSPLRLVLAGMVVSLYLGALTTLLLLFN 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 179 SDKVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLAGIAV 258
Cdd:PRK10577  174 EQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALALAVLLSAAVV 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 259 SVSGLIGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIAR--SWFDPIELPVGILLSFLGGPFFLYLIHRGG 336
Cdd:PRK10577  254 SAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRllAGVGGELLPTGAVTALIGAPLLLWLLPRLR 333


                  ....
gi 2211962340 337 KQRD 340
Cdd:PRK10577  334 SAQS 337
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 72-332 4.92e-56

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 183.14  E-value: 4.92e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  72 VLVGFIVGTCLATSGALLQGVMRNPLADPGIIGVSSGAGL-VAIVIMILFPQHMAFLPLGAFLGAFITAMVIYALSWQKG 150
Cdd:cd06550     1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLgVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 151 APPSRIVLVGVSINALIGAATSALMLLHSDKVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDE 230
Cdd:cd06550    81 LSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDED 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 231 MAKLLGHNVERSRFYLIVVSTLLAGIAVSVSGLIGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIARsWFD 310
Cdd:cd06550   161 LAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSR-TLL 239

                         250       260
                  ....*....|....*....|..
gi 2211962340 311 PIELPVGILLSFLGGPFFLYLI 332
Cdd:cd06550   240 PSELPVGPVTALLGAPYFLYLL 261
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
24-336 2.38e-55

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 183.36  E-value: 2.38e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  24 SLVVLTILGLFYG-LFAGS-LSFSLRDILTGI--QDEGSTVHRIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNPLAD 99
Cdd:PRK11228    3 GLPVAALIGLFWLsLFCYSaIPISAADALNALlpGHTPTLPEALVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLAS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 100 PGIIGVSSGAGLVAIVIMILFPQHMA--FLPLGAFLGAFITAMVIYALS--WQKGAPPSRIVLVGVSINALIGAATSALM 175
Cdd:PRK11228   83 PSLLGINSGAALAMALTSALSPTPFAgySLAFIAACGGGLSWLLVMTAGggWRHTHDRNRLILAGIALSALCMALTRITL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 176 LLHSDKVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLAG 255
Cdd:PRK11228  163 LLAEDHAYGIFYWLAGGVSHARWQEVWQLLPFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVG 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 256 IAVSVSGLIGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIARSWFDPIELPVGILLSFLGGPFFLYLIHRG 335
Cdd:PRK11228  243 ACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMSMLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCFVWLARRR 322


                  .
gi 2211962340 336 G 336
Cdd:PRK11228  323 G 323
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
14-332 4.25e-47

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 162.19  E-value: 4.25e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  14 FAKKRWIIAVSLVVLTILGL-FYGLFAGSLSFSLRDILTGIQDEGS-TVHRIVWDLRIPRVLVGFIVGTCLATSGALLQG 91
Cdd:PRK10440    3 YVSRRLLITCLLLLAACVAAgLWGLRSGAVTLETSQVFAALMGDAPrSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  92 VMRNPLADPGIIGVSSGAGLVAIVIMILFPQHMAFLPLGAFLGAFITAMVIYALSWQKGAPPSRIVLVGVSINALIGAAT 171
Cdd:PRK10440   83 LMRNPLGSPDVMGFNTGAWSGVLVAMVLFGQDLTAIALAAMAGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVAFN 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 172 SALMLLHS-DKVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVS 250
Cdd:PRK10440  163 TWLLLKASlETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLMLVA 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 251 TLLAGIAVSVSGLIGFVGLVVPHMLRLLVGNDyKYLLPLSCLGGGILLVFADAIARSWFDPIELPVGILLSFLGGPFFLY 330
Cdd:PRK10440  243 VVLTAAATALAGPISFIALVAPHIARRLSGTA-RWGLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIV 321


                  ..
gi 2211962340 331 LI 332
Cdd:PRK10440  322 LL 323
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
25-334 4.83e-42

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 149.09  E-value: 4.83e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340  25 LVVLTILGLFYGlfAGSLSFSL-RDILTGIQDEGSTVhrIVWDLRIPRVLVGFIVGTCLATSGALLQGVMRNPLADPGII 103
Cdd:PRK10441   20 LIIATALSLLIG--AKSLPASVvLEALSGTCQSADCT--IVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 104 GVSSGAGLvAIVIMILF------PQHMAFlplgAFLGAFITAMVIYALSWQKG--APPSRIVLVGVSINALIGAATSALM 175
Cdd:PRK10441   96 GVNAGASF-AIVLGAALfgyssaQEQLAM----AFAGALVASLIVAFTGSQGGgqLSPVRLTLAGVALAAVLEGLTSGIA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2211962340 176 LLHSDKVQSVLPWLAGGIGGVSWAHLNMIIYYAIFAIILAFFGIKHIRVLMLGDEMAKLLGHNVERSRFYLIVVSTLLAG 255
Cdd:PRK10441  171 LLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCG 250

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2211962340 256 IAVSVSGLIGFVGLVVPHMLRLLVGNDYKYLLPLSCLGGGILLVFADAIARsWFDPIELPVGILLSFLGGPFFLYLIHR 334
Cdd:PRK10441  251 SATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGR-LLVPGELRVSVVSAFIGAPVLIFLVRR 328
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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