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Conserved domains on  [gi|2219747684|ref|WP_243787432|]
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P-type conjugative transfer protein VirB9 [Pseudomonas amygdali]

Protein Classification

P-type conjugative transfer protein VirB9( domain architecture ID 10798625)

P-type conjugative transfer protein VirB9 is a component of the type IV secretion system, which is employed by pathogenic bacteria to export virulence proteins directly from the bacterial cytoplasm into the host cell

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
VirB9 TIGR02781
P-type conjugative transfer protein VirB9; The VirB9 protein is found in the vir locus of ...
9-246 7.55e-82

P-type conjugative transfer protein VirB9; The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system . VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein. [Cellular processes, Conjugation]


:

Pssm-ID: 274296 [Multi-domain]  Cd Length: 243  Bit Score: 246.08  E-value: 7.55e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684   9 LTALLALTCVVPALAESMGTGSSLDRRVQTAVYSPDNVYRIQAAVGRTSLVQLPANETINeasgLMVSGDPKAWSIGPNk 88
Cdd:TIGR02781   3 LIALLLLTLAIPAYALNTPRGSSYDSRIRTVVYNPDDVVRVVTSYGYSTTIEFADDETIK----TVAVGDSKAWEVTPN- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684  89 aGNLVAIKPiTDQEPNTNLVINTNRHTYLLELKLVT----RAADMTYALRFTYPEP-PKKTGAVRRDPGNPCDGPVQNGP 163
Cdd:TIGR02781  78 -GNKLFIKP-TEKDWKTNMTVVTNKRSYVFDLTSRDgldsEVQDLAYSVRFRYPAEeAEADADLAKLAEAKQSQPIANGL 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684 164 YQKRSN-----AESKSIGPYEGWDNGMLTCFRFTGNGPRPVLYQVLPDGTETVADMHNEQNVVVVHGVSRLFRFRLNSLV 238
Cdd:TIGR02781 156 GPEDVNwnytfSGSASIAPIEAFDDGRFTYFKFPNNKEIPAIFIVDEDGKESLVNYRVEGNYVVVQGVAKKLVLRYGDKV 235

                  ....*...
gi 2219747684 239 VEVRPTAQ 246
Cdd:TIGR02781 236 VGVFNTAF 243
 
Name Accession Description Interval E-value
VirB9 TIGR02781
P-type conjugative transfer protein VirB9; The VirB9 protein is found in the vir locus of ...
9-246 7.55e-82

P-type conjugative transfer protein VirB9; The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system . VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein. [Cellular processes, Conjugation]


Pssm-ID: 274296 [Multi-domain]  Cd Length: 243  Bit Score: 246.08  E-value: 7.55e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684   9 LTALLALTCVVPALAESMGTGSSLDRRVQTAVYSPDNVYRIQAAVGRTSLVQLPANETINeasgLMVSGDPKAWSIGPNk 88
Cdd:TIGR02781   3 LIALLLLTLAIPAYALNTPRGSSYDSRIRTVVYNPDDVVRVVTSYGYSTTIEFADDETIK----TVAVGDSKAWEVTPN- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684  89 aGNLVAIKPiTDQEPNTNLVINTNRHTYLLELKLVT----RAADMTYALRFTYPEP-PKKTGAVRRDPGNPCDGPVQNGP 163
Cdd:TIGR02781  78 -GNKLFIKP-TEKDWKTNMTVVTNKRSYVFDLTSRDgldsEVQDLAYSVRFRYPAEeAEADADLAKLAEAKQSQPIANGL 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684 164 YQKRSN-----AESKSIGPYEGWDNGMLTCFRFTGNGPRPVLYQVLPDGTETVADMHNEQNVVVVHGVSRLFRFRLNSLV 238
Cdd:TIGR02781 156 GPEDVNwnytfSGSASIAPIEAFDDGRFTYFKFPNNKEIPAIFIVDEDGKESLVNYRVEGNYVVVQGVAKKLVLRYGDKV 235

                  ....*...
gi 2219747684 239 VEVRPTAQ 246
Cdd:TIGR02781 236 VGVFNTAF 243
VirB9 COG3504
Type IV secretory pathway, VirB9 components [Intracellular trafficking, secretion, and ...
23-252 8.61e-57

Type IV secretory pathway, VirB9 components [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442727 [Multi-domain]  Cd Length: 229  Bit Score: 181.66  E-value: 8.61e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684  23 AESMGTGSSLDRRVQTAVYSPDNVYRIQAAVGRTSLVQLPANETINEASglmvSGDPKAWSIGPNKaGNLVAIKPiTDQE 102
Cdd:COG3504     1 ALVTPRPGAYDNRIRVVPYNPGAVYRVYTAPGYVTDIELEPGEEIESVA----AGDTVRWQVGPTK-GNHLFVKP-TEPG 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684 103 PNTNLVINTNRHTYLLELKLVTRAADMTYALRFTYPEPP-KKTGAVRRDPGNPCDGPVQNGPYQKRSN-----AESKSIG 176
Cdd:COG3504    75 LDTNLTVVTNRRTYHFELRSTADRATYMYRVRFRYPDDEaAALAAAAAAAAAAAAAPVAPGVDPEPLNfnytiSGDAALR 154
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2219747684 177 PYEGWDNGMLTCFRF-TGNGPRPVLYQVLPDGTETVADMHNEQNVVVVHGVSRLFRFRLNSLVVEVRptaqvNTGYN 252
Cdd:COG3504   155 PVRVFDDGRFTYIRFpAGNGELPAIFVVGPDGEESLVNYRVRGNYVVVDRVFPAAVLRLGDEVVCIE-----NTGFG 226
CagX pfam03524
Conjugal transfer protein; This family includes type IV secretion system CagX conjugation ...
35-242 1.87e-52

Conjugal transfer protein; This family includes type IV secretion system CagX conjugation protein. Other members of this family are involved in conjugal transfer to plant cells of T-DNA.


Pssm-ID: 427348 [Multi-domain]  Cd Length: 216  Bit Score: 170.15  E-value: 1.87e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684  35 RVQTAVYSPDNVYRIQAAVGRTSLVQLPANETINEASGlmvsGDPKAWSIGPNkaGNLVAIKPiTDQEPNTNLVINTNRH 114
Cdd:pfam03524   1 RIRVVPYSPGAVYRVYTAPGYVTDIELEPGETIVAVAL----GDTVRWEVGPR--GNHLFVKP-TEAGLDTNLVVVTDRR 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684 115 TYLLELKLVTR-AADMTYALRFTYPEPP--------KKTGAVRRDPGNPCDGPVQNGPYQKRSN----AESKSIGPYEGW 181
Cdd:pfam03524  74 TYHFELRSTSRdNATYMYVVRFRYPDDEaaaaaaaaAAAAAASLAAAEAAAPAAEGVAPGALNFryaiSGDAAIAPVRVF 153
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2219747684 182 DNGMLTCFRFTGNGPRPVLYQVLPDGTETVADMHNEQNVVVVHGVSRLFRFRLNSLVVEVR 242
Cdd:pfam03524 154 DDGRFTYIRFPANGELPALFVVGPDGKESLVNYRVEGNYVVVDRVARRFVLRLGQEVVRIE 214
PRK13861 PRK13861
type IV secretion system protein VirB9; Provisional
1-262 1.80e-23

type IV secretion system protein VirB9; Provisional


Pssm-ID: 172382 [Multi-domain]  Cd Length: 292  Bit Score: 96.47  E-value: 1.80e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684   1 MGNKAASGLTALLALTcvVPALAESMGTGSSLDRRVQTAVYSPDNVYRIQAAVGRTSLVQLPANETIneaSGLMVSgDPK 80
Cdd:PRK13861    1 MIKKLFLTLACLLFAA--IGALAEDTPAAGKLDPRMRYLAYNPDQVVRLSTAVGATLVVTFGANETV---TAVAVS-NSK 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684  81 AWSIGPNkaGNLVAIKPITDQEPNTNLVINTN-----RHTYLLELKLVTR----AADMTYALRFTYP---------EPPK 142
Cdd:PRK13861   75 DLAALPR--GNYLFFKASKVLPPQPVIVLTASdagmrRYVFSISSKTLSHldkeQPDLYYSVQFTYPaddaaarrkEAEQ 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684 143 KTGAVR--------RDPGNPCDGPVQNGpYQKRSNAE-----SKSIGPYEGWDNGMLTCFRFTGNGPRPVLYQVLPDGTE 209
Cdd:PRK13861  153 KAVADRlraeaqyqRRAEDLLDQPATDG-GAGDKNWHyvaqgDRSLLPLEVFDNGFSTVFRFPGNVRIPSIYTINPDGKE 231
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2219747684 210 TVADMHNEQNVVVVHGVSRLFRFRLNSLVVEVrptaqVNTGYNFNGTT--TGEIR 262
Cdd:PRK13861  232 ATANYSVKGSYVEVSSVSREWRLRDGHTVLCI-----WNTAYDPVGRRpgTGTVR 281
VirB9_CagX_TrbG cd06911
VirB9/CagX/TrbG, a component of the type IV secretion system; VirB9 is a component of the type ...
161-242 2.35e-20

VirB9/CagX/TrbG, a component of the type IV secretion system; VirB9 is a component of the type IV secretion system, which is employed by pathogenic bacteria to export virulence proteins directly from the bacterial cytoplasm into the host cell. Unlike the more common type III secretion system, type IV systems evolved from the conjugative apparatus, which is used to transfer DNA between cells. VirB9 was initially identified as an essential virulence gene on the Agrobacterium tumefaciens Ti plasmid. In the pilin-like conjugative structure, VirB9 appears to form a stabilizing complex in the outer membrane, by interacting with the lipoprotein VirB7. The heterodimer has been shown to stabilize other components of the type IV system. This alignment model spans the C-terminal domain of VirB9. CagX is a component of the Helicobacter pylori cag PAI-encoded type IV secretion system. Some other members of this family are involved in conjugal transfer to T-DNA of plant cells.


Pssm-ID: 132874 [Multi-domain]  Cd Length: 86  Bit Score: 82.63  E-value: 2.35e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684 161 NGPYQKRSnaeSKSIGPYEGWDNGMLTCFRFTGNGPRPVLYQVLPDGTETVADMHNEQNVVVVHGVSRLFRFRLNSLVVE 240
Cdd:cd06911     5 NFDYSISG---SAAIKPVRVFDDGRFTYFQFPPNAELPAIFVVDPDGKESLVNYRVEGNYIVVDGVAPKLVLRLGDEVVR 81

                  ..
gi 2219747684 241 VR 242
Cdd:cd06911    82 IV 83
 
Name Accession Description Interval E-value
VirB9 TIGR02781
P-type conjugative transfer protein VirB9; The VirB9 protein is found in the vir locus of ...
9-246 7.55e-82

P-type conjugative transfer protein VirB9; The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system . VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein. [Cellular processes, Conjugation]


Pssm-ID: 274296 [Multi-domain]  Cd Length: 243  Bit Score: 246.08  E-value: 7.55e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684   9 LTALLALTCVVPALAESMGTGSSLDRRVQTAVYSPDNVYRIQAAVGRTSLVQLPANETINeasgLMVSGDPKAWSIGPNk 88
Cdd:TIGR02781   3 LIALLLLTLAIPAYALNTPRGSSYDSRIRTVVYNPDDVVRVVTSYGYSTTIEFADDETIK----TVAVGDSKAWEVTPN- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684  89 aGNLVAIKPiTDQEPNTNLVINTNRHTYLLELKLVT----RAADMTYALRFTYPEP-PKKTGAVRRDPGNPCDGPVQNGP 163
Cdd:TIGR02781  78 -GNKLFIKP-TEKDWKTNMTVVTNKRSYVFDLTSRDgldsEVQDLAYSVRFRYPAEeAEADADLAKLAEAKQSQPIANGL 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684 164 YQKRSN-----AESKSIGPYEGWDNGMLTCFRFTGNGPRPVLYQVLPDGTETVADMHNEQNVVVVHGVSRLFRFRLNSLV 238
Cdd:TIGR02781 156 GPEDVNwnytfSGSASIAPIEAFDDGRFTYFKFPNNKEIPAIFIVDEDGKESLVNYRVEGNYVVVQGVAKKLVLRYGDKV 235

                  ....*...
gi 2219747684 239 VEVRPTAQ 246
Cdd:TIGR02781 236 VGVFNTAF 243
VirB9 COG3504
Type IV secretory pathway, VirB9 components [Intracellular trafficking, secretion, and ...
23-252 8.61e-57

Type IV secretory pathway, VirB9 components [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442727 [Multi-domain]  Cd Length: 229  Bit Score: 181.66  E-value: 8.61e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684  23 AESMGTGSSLDRRVQTAVYSPDNVYRIQAAVGRTSLVQLPANETINEASglmvSGDPKAWSIGPNKaGNLVAIKPiTDQE 102
Cdd:COG3504     1 ALVTPRPGAYDNRIRVVPYNPGAVYRVYTAPGYVTDIELEPGEEIESVA----AGDTVRWQVGPTK-GNHLFVKP-TEPG 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684 103 PNTNLVINTNRHTYLLELKLVTRAADMTYALRFTYPEPP-KKTGAVRRDPGNPCDGPVQNGPYQKRSN-----AESKSIG 176
Cdd:COG3504    75 LDTNLTVVTNRRTYHFELRSTADRATYMYRVRFRYPDDEaAALAAAAAAAAAAAAAPVAPGVDPEPLNfnytiSGDAALR 154
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2219747684 177 PYEGWDNGMLTCFRF-TGNGPRPVLYQVLPDGTETVADMHNEQNVVVVHGVSRLFRFRLNSLVVEVRptaqvNTGYN 252
Cdd:COG3504   155 PVRVFDDGRFTYIRFpAGNGELPAIFVVGPDGEESLVNYRVRGNYVVVDRVFPAAVLRLGDEVVCIE-----NTGFG 226
CagX pfam03524
Conjugal transfer protein; This family includes type IV secretion system CagX conjugation ...
35-242 1.87e-52

Conjugal transfer protein; This family includes type IV secretion system CagX conjugation protein. Other members of this family are involved in conjugal transfer to plant cells of T-DNA.


Pssm-ID: 427348 [Multi-domain]  Cd Length: 216  Bit Score: 170.15  E-value: 1.87e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684  35 RVQTAVYSPDNVYRIQAAVGRTSLVQLPANETINEASGlmvsGDPKAWSIGPNkaGNLVAIKPiTDQEPNTNLVINTNRH 114
Cdd:pfam03524   1 RIRVVPYSPGAVYRVYTAPGYVTDIELEPGETIVAVAL----GDTVRWEVGPR--GNHLFVKP-TEAGLDTNLVVVTDRR 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684 115 TYLLELKLVTR-AADMTYALRFTYPEPP--------KKTGAVRRDPGNPCDGPVQNGPYQKRSN----AESKSIGPYEGW 181
Cdd:pfam03524  74 TYHFELRSTSRdNATYMYVVRFRYPDDEaaaaaaaaAAAAAASLAAAEAAAPAAEGVAPGALNFryaiSGDAAIAPVRVF 153
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2219747684 182 DNGMLTCFRFTGNGPRPVLYQVLPDGTETVADMHNEQNVVVVHGVSRLFRFRLNSLVVEVR 242
Cdd:pfam03524 154 DDGRFTYIRFPANGELPALFVVGPDGKESLVNYRVEGNYVVVDRVARRFVLRLGQEVVRIE 214
PRK13861 PRK13861
type IV secretion system protein VirB9; Provisional
1-262 1.80e-23

type IV secretion system protein VirB9; Provisional


Pssm-ID: 172382 [Multi-domain]  Cd Length: 292  Bit Score: 96.47  E-value: 1.80e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684   1 MGNKAASGLTALLALTcvVPALAESMGTGSSLDRRVQTAVYSPDNVYRIQAAVGRTSLVQLPANETIneaSGLMVSgDPK 80
Cdd:PRK13861    1 MIKKLFLTLACLLFAA--IGALAEDTPAAGKLDPRMRYLAYNPDQVVRLSTAVGATLVVTFGANETV---TAVAVS-NSK 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684  81 AWSIGPNkaGNLVAIKPITDQEPNTNLVINTN-----RHTYLLELKLVTR----AADMTYALRFTYP---------EPPK 142
Cdd:PRK13861   75 DLAALPR--GNYLFFKASKVLPPQPVIVLTASdagmrRYVFSISSKTLSHldkeQPDLYYSVQFTYPaddaaarrkEAEQ 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684 143 KTGAVR--------RDPGNPCDGPVQNGpYQKRSNAE-----SKSIGPYEGWDNGMLTCFRFTGNGPRPVLYQVLPDGTE 209
Cdd:PRK13861  153 KAVADRlraeaqyqRRAEDLLDQPATDG-GAGDKNWHyvaqgDRSLLPLEVFDNGFSTVFRFPGNVRIPSIYTINPDGKE 231
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2219747684 210 TVADMHNEQNVVVVHGVSRLFRFRLNSLVVEVrptaqVNTGYNFNGTT--TGEIR 262
Cdd:PRK13861  232 ATANYSVKGSYVEVSSVSREWRLRDGHTVLCI-----WNTAYDPVGRRpgTGTVR 281
VirB9_CagX_TrbG cd06911
VirB9/CagX/TrbG, a component of the type IV secretion system; VirB9 is a component of the type ...
161-242 2.35e-20

VirB9/CagX/TrbG, a component of the type IV secretion system; VirB9 is a component of the type IV secretion system, which is employed by pathogenic bacteria to export virulence proteins directly from the bacterial cytoplasm into the host cell. Unlike the more common type III secretion system, type IV systems evolved from the conjugative apparatus, which is used to transfer DNA between cells. VirB9 was initially identified as an essential virulence gene on the Agrobacterium tumefaciens Ti plasmid. In the pilin-like conjugative structure, VirB9 appears to form a stabilizing complex in the outer membrane, by interacting with the lipoprotein VirB7. The heterodimer has been shown to stabilize other components of the type IV system. This alignment model spans the C-terminal domain of VirB9. CagX is a component of the Helicobacter pylori cag PAI-encoded type IV secretion system. Some other members of this family are involved in conjugal transfer to T-DNA of plant cells.


Pssm-ID: 132874 [Multi-domain]  Cd Length: 86  Bit Score: 82.63  E-value: 2.35e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684 161 NGPYQKRSnaeSKSIGPYEGWDNGMLTCFRFTGNGPRPVLYQVLPDGTETVADMHNEQNVVVVHGVSRLFRFRLNSLVVE 240
Cdd:cd06911     5 NFDYSISG---SAAIKPVRVFDDGRFTYFQFPPNAELPAIFVVDPDGKESLVNYRVEGNYIVVDGVAPKLVLRLGDEVVR 81

                  ..
gi 2219747684 241 VR 242
Cdd:cd06911    82 IV 83
PRK13885 PRK13885
conjugal transfer protein TrbG; Provisional
47-214 8.17e-04

conjugal transfer protein TrbG; Provisional


Pssm-ID: 237543  Cd Length: 299  Bit Score: 40.11  E-value: 8.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684  47 YRIQAAVGRTSLVQLPANETINEasglMVSGDPKAWSI-------GPNKAGNLVaIKPItDQEPNTNLVINTNRHTYLLE 119
Cdd:PRK13885   81 PSIVCAVLQVCDIALQPGEQVNS----INLGDTARWTVepaitgsGANEVQHLI-IKPM-DVGLETSLVVTTDRRTYHFR 154
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2219747684 120 LKlVTRAADMTYaLRFTYPEPPK-KTGAVRRdpgnpcdgpvqngpyQKRSNAESKSIgPYEGWDNGMLTC-FRFTGNGP- 196
Cdd:PRK13885  155 LR-SHRTEYMPQ-VSFTYPEDALaKWDAIQR---------------REAQERTDNTL-PQTGEYLGDLSFdYEISGSASw 216
                         170
                  ....*....|....*...
gi 2219747684 197 RPVlyQVLPDGTETVADM 214
Cdd:PRK13885  217 KPV--RVYNDGRKTIIEM 232
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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