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Conserved domains on  [gi|2222706701|ref|WP_244589756|]
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recombination protein NinB, partial [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NinB super family cl21658
NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and ...
 2-79 1.01e-31

NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.


The actual alignment was detected with superfamily member pfam05772:

Pssm-ID: 451348  Cd Length: 117  Bit Score: 107.46  E-value: 1.01e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2222706701   2 RMWPMLNDVSRQVLWHGQRLAPEDWKDLFTALWLKTkkleQRSVPGIDGGVVMLGVRTSKMRKASMTELIEIMFWFGS 79
Cdd:pfam05772  44 KLWALLGDIARQVEWHGEKLDAEDWKDLLTAALKQA----QKVVPGLDGGFVVLGQSTSKMSVKEMAELIELITAFGA 117
 
Name Accession Description Interval E-value
NinB pfam05772
NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and ...
 2-79 1.01e-31

NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.


Pssm-ID: 428623  Cd Length: 117  Bit Score: 107.46  E-value: 1.01e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2222706701   2 RMWPMLNDVSRQVLWHGQRLAPEDWKDLFTALWLKTkkleQRSVPGIDGGVVMLGVRTSKMRKASMTELIEIMFWFGS 79
Cdd:pfam05772  44 KLWALLGDIARQVEWHGEKLDAEDWKDLLTAALKQA----QKVVPGLDGGFVVLGQSTSKMSVKEMAELIELITAFGA 117
 
Name Accession Description Interval E-value
NinB pfam05772
NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and ...
 2-79 1.01e-31

NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.


Pssm-ID: 428623  Cd Length: 117  Bit Score: 107.46  E-value: 1.01e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2222706701   2 RMWPMLNDVSRQVLWHGQRLAPEDWKDLFTALWLKTkkleQRSVPGIDGGVVMLGVRTSKMRKASMTELIEIMFWFGS 79
Cdd:pfam05772  44 KLWALLGDIARQVEWHGEKLDAEDWKDLLTAALKQA----QKVVPGLDGGFVVLGQSTSKMSVKEMAELIELITAFGA 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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