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Conserved domains on  [gi|2225546360|ref|WP_245558792|]
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transposase [Kushneria aurantia]

Protein Classification

transposase family protein( domain architecture ID 1750059)

transposase family protein might bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0003677|GO:0006313
PubMed:  11774877

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS3 super family cl41295
IS3 family transposase;
46-139 3.18e-06

IS3 family transposase;


The actual alignment was detected with superfamily member NF033516:

Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 45.25  E-value: 3.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2225546360  46 QEKFQIVLEtAPMNEAEVSAYCRERGLYPEQVEAWRNACMNANDEAAAQAGQHRQAR-KAEHKRLRKLERELHRKDKALA 124
Cdd:NF033516    1 EFKLEAVRE-VLEGGKSVAEVARELGISPSTLYRWRKKYRGGGEAADAGRLKELLTPeEEENRRLKRELAELRLENEILK 79

                          90
                  ....*....|....*
gi 2225546360 125 ETAALLTLSKKAEAI 139
Cdd:NF033516   80 KARKLLRPAVKYALI 94
transpos_IS3 super family cl41295
IS3 family transposase;
3-48 3.51e-04

IS3 family transposase;


The actual alignment was detected with superfamily member NF033516:

Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 39.47  E-value: 3.51e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2225546360   3 MTIPELAEQEGITATTLYNWRKQARARGQVlPSRSNQPDQWTSQEK 48
Cdd:NF033516   15 KSVAEVARELGISPSTLYRWRKKYRGGGEA-ADAGRLKELLTPEEE 59
 
Name Accession Description Interval E-value
transpos_IS3 NF033516
IS3 family transposase;
46-139 3.18e-06

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 45.25  E-value: 3.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2225546360  46 QEKFQIVLEtAPMNEAEVSAYCRERGLYPEQVEAWRNACMNANDEAAAQAGQHRQAR-KAEHKRLRKLERELHRKDKALA 124
Cdd:NF033516    1 EFKLEAVRE-VLEGGKSVAEVARELGISPSTLYRWRKKYRGGGEAADAGRLKELLTPeEEENRRLKRELAELRLENEILK 79

                          90
                  ....*....|....*
gi 2225546360 125 ETAALLTLSKKAEAI 139
Cdd:NF033516   80 KARKLLRPAVKYALI 94
transpos_IS3 NF033516
IS3 family transposase;
3-48 3.51e-04

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 39.47  E-value: 3.51e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2225546360   3 MTIPELAEQEGITATTLYNWRKQARARGQVlPSRSNQPDQWTSQEK 48
Cdd:NF033516   15 KSVAEVARELGISPSTLYRWRKKYRGGGEA-ADAGRLKELLTPEEE 59
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
3-40 7.11e-04

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 36.83  E-value: 7.11e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2225546360   3 MTIPELAEQEGITATTLYNWRKQARARGQVLPSRSNQP 40
Cdd:COG2963    25 ASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRT 62
 
Name Accession Description Interval E-value
transpos_IS3 NF033516
IS3 family transposase;
46-139 3.18e-06

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 45.25  E-value: 3.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2225546360  46 QEKFQIVLEtAPMNEAEVSAYCRERGLYPEQVEAWRNACMNANDEAAAQAGQHRQAR-KAEHKRLRKLERELHRKDKALA 124
Cdd:NF033516    1 EFKLEAVRE-VLEGGKSVAEVARELGISPSTLYRWRKKYRGGGEAADAGRLKELLTPeEEENRRLKRELAELRLENEILK 79

                          90
                  ....*....|....*
gi 2225546360 125 ETAALLTLSKKAEAI 139
Cdd:NF033516   80 KARKLLRPAVKYALI 94
transpos_IS3 NF033516
IS3 family transposase;
3-48 3.51e-04

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 39.47  E-value: 3.51e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2225546360   3 MTIPELAEQEGITATTLYNWRKQARARGQVlPSRSNQPDQWTSQEK 48
Cdd:NF033516   15 KSVAEVARELGISPSTLYRWRKKYRGGGEA-ADAGRLKELLTPEEE 59
InsE COG2963
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
3-40 7.11e-04

Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442203 [Multi-domain]  Cd Length: 93  Bit Score: 36.83  E-value: 7.11e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2225546360   3 MTIPELAEQEGITATTLYNWRKQARARGQVLPSRSNQP 40
Cdd:COG2963    25 ASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRT 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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