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Conserved domains on  [gi|2254477256|ref|WP_251647564|]
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YhgE/Pip domain-containing protein [Rummeliibacillus stabekisii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
pip_yhgE_Cterm TIGR03062
YhgE/Pip C-terminal domain; This family contains the C-terminal domain of a family of multiple ...
 720-925 3.95e-76

YhgE/Pip C-terminal domain; This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.


:

Pssm-ID: 274414 [Multi-domain]  Cd Length: 208  Bit Score: 247.49  E-value: 3.95e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 720 YDMVGEPVEVEKQEVNKVPTYGTGFAPFMLSLGLFVGALMLSIIYPFVDAAIRPKNGFSW--FLSKVSVLAVVGLVQSTL 797
Cdd:TIGR03062   1 AKMVAEPVKLKHSDYDDVPNYGTGLAPYFLSLALFVGALVLNLIFPPLSRRALPKSARSWriALAKLLPGGLIGVIQAII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 798 VVIIALFFLKIEVVNVPAFIFMTVLASYTFLALIQMLVSILDNPGRFIAIIILVLQLTTSAGTFPLELVSKPLQVFNKFL 877
Cdd:TIGR03062  81 LYGVLILALGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGSVGRFLALVLLVLQLGSSGGTFPIELLPAFFQAIHPFL 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2254477256 878 PMTYSIQGFRAAISTGDMSFFAFNAVVLISCMVVFLIITCGYFVLRYK 925
Cdd:TIGR03062 161 PMTYSVNGLRQLISGGDDSTLWQAVAVLLLILVIFLALSLLSARRKRR 208
pip_yhgE_Nterm TIGR03061
YhgE/Pip N-terminal domain; This family contains the N-terminal domain of a family of multiple ...
 4-167 2.02e-66

YhgE/Pip N-terminal domain; This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.


:

Pssm-ID: 274413 [Multi-domain]  Cd Length: 164  Bit Score: 219.38  E-value: 2.02e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256   4 AEWSAIFHSKKVLVAIIAILFVPIIYAGTYLWAYWDPYSHLDELPVAIVNDDTGAKLDGKKQNLGNDLVERLIDSNKFKF 83
Cdd:TIGR03061   1 SELKRLRKNKLLRIALIAIMLIPLLYGGLFLWAFWDPYGNLDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  84 KEVSDSAGKDGLKNRDYYLEILIPKDFTKNAGSLLEDDPEQMKIIYRPNEGYNFLGSQIGNSAIELVRKEVNKQVSATYA 163
Cdd:TIGR03061  81 HFVSAKEAEKGLADGKYYMVITIPEDFSENATSLLDDQPKKAQLIYKTNDANNYIASQIAESAAEKVKTSVSKSITETYA 160


                  ....
gi 2254477256 164 KTLF 167
Cdd:TIGR03061 161 ETIF 164
auto_Ata super family cl41274
trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an ...
 171-701 1.73e-06

trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an architecture that consists of a long signal peptide, a repetitive passenger domain that varies in length from strain to strain, and a C-terminal domain of four transmembrane beta stands that forms one third of the pore for autotransporter activity and anchoring in the outer membrane.


The actual alignment was detected with superfamily member NF033481:

Pssm-ID: 411124 [Multi-domain]  Cd Length: 1862  Bit Score: 52.17  E-value: 1.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  171 KKMGNGFGDAA--DGAGKLATGAGKLDKGANQLNEGVQSAKE---------------------GSTKLNNGAQSAKNGAY 227
Cdd:NF033481   136 KGLGTAIGSYAttQGISGVAIGTGALSSGNTALAVGRQSAATadfsqaignvaaatgkgslaiGHSATAEGYRSIAIGSP 215

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  228 DLKNGVDSAANGANKLNDGASSAATGAKDLENGINSAADGANKLNDGANSATTGAKDLENGINSAA--DGANKVNDGAQS 305
Cdd:NF033481   216 DIENADPVAGQAGAAYQPKMATKATGKDSIAFGGGAVATEENALAIGAFSESKGKKSVAIGTGAKAqkDNAVVIGDQAEA 295

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  306 AINGSKDLQNGINSAKSGSTQLQTGSSDLKKGTESLVSGLEGNTANIKALNDGAQKvnngvatlsgGLSQLAPGAADVSN 385
Cdd:NF033481   296 SFEGGVAIGKGARSEAENSIALGKDSKASQATGESFLTKQSAPTGVLSIGDIGTER----------RIQNVADGAADSDA 365

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  386 GVTKlvdglgeipnQIQSLKTGVANLNGGAADLTNGTQTLSAGTKKLIQQINAMDIPEEqKQALLQTANVVNQGASEVDS 465
Cdd:NF033481   366 ATVR----------QLKAARTHYVSINDNGQQGGNFENDGATGRNAIAVGVNASAAGRE-AMAIGGSAQAIGSGAIAMGS 434

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  466 GAKKLSAGTSVLNQSVSginapttgelsklKQGAAKVSTsldqmNQSVS---NELAPGTKDLADGTSQLADKWNSSIEGA 542
Cdd:NF033481   435 SSQTVGRGDVAIGRNAS-------------TQGAEGVNS-----NQSVAigdQTKAIGDQSVAIGADVIAKGNSSVAIGG 496

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  543 KKLDAGAGQLNTGISSLDNGLGQLQTGSGKLT------SGLGTLSNGTNSLANGMGKLQNGSTQLTTGLGTLSNGTKSLV 616
Cdd:NF033481   497 DDVDKIARDTELSNTYTEITGGTLQAGKYPTTeanhgsTAVGVQAVGTGAFSSAFGMTSKATGDASSAFGVMSNASGKGA 576

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  617 GGIGQL--QAGSGQLSTGLGTLSNGTKSLVGGMGQlQTGSGQLATGldtlsNGTKSLVSGSAQLSDGSSQLASGAGELQD 694
Cdd:NF033481   577 AAFGAVaqATGDGASAMGINSLASGTNSTAIGSGN-KPGEGAKATG-----NSSAAIGSGAQATGDNSAAIGKGAEATNE 650


                   ....*..
gi 2254477256  695 GAGKLQG 701
Cdd:NF033481   651 NAAAVGG 657
 
Name Accession Description Interval E-value
pip_yhgE_Cterm TIGR03062
YhgE/Pip C-terminal domain; This family contains the C-terminal domain of a family of multiple ...
 720-925 3.95e-76

YhgE/Pip C-terminal domain; This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.


Pssm-ID: 274414 [Multi-domain]  Cd Length: 208  Bit Score: 247.49  E-value: 3.95e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 720 YDMVGEPVEVEKQEVNKVPTYGTGFAPFMLSLGLFVGALMLSIIYPFVDAAIRPKNGFSW--FLSKVSVLAVVGLVQSTL 797
Cdd:TIGR03062   1 AKMVAEPVKLKHSDYDDVPNYGTGLAPYFLSLALFVGALVLNLIFPPLSRRALPKSARSWriALAKLLPGGLIGVIQAII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 798 VVIIALFFLKIEVVNVPAFIFMTVLASYTFLALIQMLVSILDNPGRFIAIIILVLQLTTSAGTFPLELVSKPLQVFNKFL 877
Cdd:TIGR03062  81 LYGVLILALGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGSVGRFLALVLLVLQLGSSGGTFPIELLPAFFQAIHPFL 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2254477256 878 PMTYSIQGFRAAISTGDMSFFAFNAVVLISCMVVFLIITCGYFVLRYK 925
Cdd:TIGR03062 161 PMTYSVNGLRQLISGGDDSTLWQAVAVLLLILVIFLALSLLSARRKRR 208
pip_yhgE_Nterm TIGR03061
YhgE/Pip N-terminal domain; This family contains the N-terminal domain of a family of multiple ...
 4-167 2.02e-66

YhgE/Pip N-terminal domain; This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.


Pssm-ID: 274413 [Multi-domain]  Cd Length: 164  Bit Score: 219.38  E-value: 2.02e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256   4 AEWSAIFHSKKVLVAIIAILFVPIIYAGTYLWAYWDPYSHLDELPVAIVNDDTGAKLDGKKQNLGNDLVERLIDSNKFKF 83
Cdd:TIGR03061   1 SELKRLRKNKLLRIALIAIMLIPLLYGGLFLWAFWDPYGNLDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  84 KEVSDSAGKDGLKNRDYYLEILIPKDFTKNAGSLLEDDPEQMKIIYRPNEGYNFLGSQIGNSAIELVRKEVNKQVSATYA 163
Cdd:TIGR03061  81 HFVSAKEAEKGLADGKYYMVITIPEDFSENATSLLDDQPKKAQLIYKTNDANNYIASQIAESAAEKVKTSVSKSITETYA 160


                  ....
gi 2254477256 164 KTLF 167
Cdd:TIGR03061 161 ETIF 164
YhgE COG1511
Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown]; ...
 2-166 1.08e-64

Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown];


Pssm-ID: 441120  Cd Length: 225  Bit Score: 217.12  E-value: 1.08e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256   2 IKAEWSAIFHSKKVLVAIIAILFVPIIYAGTYLWAYWDPYSHLDELPVAIVNDDTGAKLDGKKQNLGNDLVERLIDSNKF 81
Cdd:COG1511     1 FKRELKRLFKNKLALIALIALILVPLLYAGLYLWAFWDPYGNLDNLPVAVVNEDKGATVDGKTVNLGDELVDELKDNDSF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  82 KFKEVSDSAGKDGLKNRDYYLEILIPKDFTKNAGSLLEDDPEQMKIIYRPNEGYNFLGSQIGNSAIELVRKEVNKQVSAT 161
Cdd:COG1511    81 DWQFVSEEEAEKGLKDGKYYAVIVIPEDFSANLASLLSDDPEKATITYYTNEANNYLASKITDTAATTVVDQVNSQVTET 160


                  ....*
gi 2254477256 162 YAKTL 166
Cdd:COG1511   161 YAETV 165
YadH COG0842
ABC-type multidrug transport system, permease component [Defense mechanisms];
740-930 8.04e-19

ABC-type multidrug transport system, permease component [Defense mechanisms];


Pssm-ID: 440604 [Multi-domain]  Cd Length: 200  Bit Score: 85.64  E-value: 8.04e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 740 YGTGFAPFMLSLGLFVGALM---LSIIYPFVDAAIR-----PKNGFSWFLSKVSVLAVVGLVQSTLVVIIALFFLKIEV- 810
Cdd:COG0842     1 YLAFLVPGLLAMSLLFTALMltaLSIAREREQGTLErllvtPVSRLEILLGKVLAYLLRGLLQALLVLLVALLFFGVPLr 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 811 -VNVPAFIFMTVLASYTFLALIQMLVSILDNPGRFIAIIILVLQLTT--SAGTFPLELVSKPLQVFNKFLPMTYSIQGFR 887
Cdd:COG0842    81 gLSLLLLLLVLLLFALAFSGLGLLISTLARSQEQASAISNLVILPLTflSGAFFPIESLPGWLQAIAYLNPLTYFVEALR 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2254477256 888 AAISTG-DMSFFAFNAVVLISCMVVFLIITcgyfVLRYKKRFSR 930
Cdd:COG0842   161 ALFLGGaGLADVWPSLLVLLAFAVVLLALA----LRLFRRRLRG 200
ABC2_membrane_3 pfam12698
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 735-916 1.32e-15

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.


Pssm-ID: 463674 [Multi-domain]  Cd Length: 345  Bit Score: 79.36  E-value: 1.32e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 735 NKVPTYGTGFAPFMLSLGLFVGAL--MLSIIYPFVDAAIR-----PKNGFSWFLSKVSVLAVVGLVQSTLVVIIAlFFLK 807
Cdd:pfam12698 154 NPQSGYAYYLVGLILMIIILIGAAiiAVSIVEEKESRIKErllvsGVSPLQYWLGKILGDFLVGLLQLLIILLLL-FGIG 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 808 IEVVNVPAFIFMTVLASYTFLALIQMLVSILDNPGRFIAIIILVLQLTT--SAGTFPLELVSKPLQVFNKFLPMTYSIQG 885
Cdd:pfam12698 233 IPFGNLGLLLLLFLLYGLAYIALGYLLGSLFKNSEDAQSIIGIVILLLSgfFGGLFPLEDPPSFLQWIFSIIPFFSPIDG 312

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2254477256 886 FRAAISTGDMSFFAFNAVVLISCMVVFLIIT 916
Cdd:pfam12698 313 LLRLIYGDSLWEIAPSLIILLLFAVVLLLLA 343
auto_Ata NF033481
trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an ...
 171-701 1.73e-06

trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an architecture that consists of a long signal peptide, a repetitive passenger domain that varies in length from strain to strain, and a C-terminal domain of four transmembrane beta stands that forms one third of the pore for autotransporter activity and anchoring in the outer membrane.


Pssm-ID: 411124 [Multi-domain]  Cd Length: 1862  Bit Score: 52.17  E-value: 1.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  171 KKMGNGFGDAA--DGAGKLATGAGKLDKGANQLNEGVQSAKE---------------------GSTKLNNGAQSAKNGAY 227
Cdd:NF033481   136 KGLGTAIGSYAttQGISGVAIGTGALSSGNTALAVGRQSAATadfsqaignvaaatgkgslaiGHSATAEGYRSIAIGSP 215

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  228 DLKNGVDSAANGANKLNDGASSAATGAKDLENGINSAADGANKLNDGANSATTGAKDLENGINSAA--DGANKVNDGAQS 305
Cdd:NF033481   216 DIENADPVAGQAGAAYQPKMATKATGKDSIAFGGGAVATEENALAIGAFSESKGKKSVAIGTGAKAqkDNAVVIGDQAEA 295

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  306 AINGSKDLQNGINSAKSGSTQLQTGSSDLKKGTESLVSGLEGNTANIKALNDGAQKvnngvatlsgGLSQLAPGAADVSN 385
Cdd:NF033481   296 SFEGGVAIGKGARSEAENSIALGKDSKASQATGESFLTKQSAPTGVLSIGDIGTER----------RIQNVADGAADSDA 365

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  386 GVTKlvdglgeipnQIQSLKTGVANLNGGAADLTNGTQTLSAGTKKLIQQINAMDIPEEqKQALLQTANVVNQGASEVDS 465
Cdd:NF033481   366 ATVR----------QLKAARTHYVSINDNGQQGGNFENDGATGRNAIAVGVNASAAGRE-AMAIGGSAQAIGSGAIAMGS 434

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  466 GAKKLSAGTSVLNQSVSginapttgelsklKQGAAKVSTsldqmNQSVS---NELAPGTKDLADGTSQLADKWNSSIEGA 542
Cdd:NF033481   435 SSQTVGRGDVAIGRNAS-------------TQGAEGVNS-----NQSVAigdQTKAIGDQSVAIGADVIAKGNSSVAIGG 496

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  543 KKLDAGAGQLNTGISSLDNGLGQLQTGSGKLT------SGLGTLSNGTNSLANGMGKLQNGSTQLTTGLGTLSNGTKSLV 616
Cdd:NF033481   497 DDVDKIARDTELSNTYTEITGGTLQAGKYPTTeanhgsTAVGVQAVGTGAFSSAFGMTSKATGDASSAFGVMSNASGKGA 576

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  617 GGIGQL--QAGSGQLSTGLGTLSNGTKSLVGGMGQlQTGSGQLATGldtlsNGTKSLVSGSAQLSDGSSQLASGAGELQD 694
Cdd:NF033481   577 AAFGAVaqATGDGASAMGINSLASGTNSTAIGSGN-KPGEGAKATG-----NSSAAIGSGAQATGDNSAAIGKGAEATNE 650


                   ....*..
gi 2254477256  695 GAGKLQG 701
Cdd:NF033481   651 NAAAVGG 657
ABC2_membrane_3 pfam12698
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 19-171 4.95e-06

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.


Pssm-ID: 463674 [Multi-domain]  Cd Length: 345  Bit Score: 49.70  E-value: 4.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  19 IIAILFVPIIYAGTYLWAYWDPYSHLDELPVAIVNDDtgakldgkKQNLGNDLVERLIDSNKFKFKEVSDS--AGKDGLK 96
Cdd:pfam12698   4 LIITLLLPILLILLLGLIFSNAVNDPEELPVAVVDED--------NSSLSRQLVRALEASPTVNLVQYVDSeeEAKEALK 75

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2254477256  97 NRDYYLEILIPKDFTKNagsLLEDDPEQMKIIYrpnEGYNFLGSQIGNSAIELVRKEVNKQVSATYAKTLFANIK 171
Cdd:pfam12698  76 NGKIDGLLVIPKGFSKD---LLKGESATVTVYI---NSSNLLVSKLILNALQSLLQQLNASALVLLLEALSTSAP 144
Hia COG5295
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, ...
 158-696 6.45e-06

Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444098 [Multi-domain]  Cd Length: 785  Bit Score: 50.15  E-value: 6.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 158 VSATYAKTLFANIKKMGNGFGDAADGAGKLATGAGKLDKGANQLNEGV--QSAKEGSTKLNNGAQSAKNGAYDLKNGVDS 235
Cdd:COG5295    83 VASGGASAATAASTGTGNTAGTAATVAGAASSGSATNAGASAGASAAAaaGSTAAAGGAAASTGGSSAAGGSNTATATGS 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 236 AANGANKLNDGASSAATGAKDLENGINSAADGANKLNDGANSATTGAKDLENGINSAADGANKVNDGAQSAINGSKDLQN 315
Cdd:COG5295   163 STANAATAAAGATSTSASGSSSGASGAAAASAATGASAGGTASAAASASSSATGTSASVGVNAGAATGSAASAGGSASAG 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 316 GINSAKSGSTQLQTGSSDLKKGTESlvsGLEGNTANIKALNDGAQKVNNGVATLSGGLSQLAPGAADVSNGVTKLVDGLG 395
Cdd:COG5295   243 AASGNATTASASSVSGSAVAAGTAS---TATTASTTAASGAAGTATAAAGGDAAAAGSASSTGAANATAGGGNAGSGGGG 319

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 396 EIPNQIQSLKTGVANLNGGAADLTNGTQTLSAGTKKLIQQINAmdipeEQKQALLQTANVVNQGASEVDSGAKKLSAGTS 475
Cdd:COG5295   320 AAALGSAGGSSGVGTASGASAAAATNDGTANGAGTSAAADATS-----GGGAGGGGAAATSSSGGSATAAGNAAGAAGAG 394

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 476 VLNQSVSGINAPTTGELSKLKQGAAKVSTSLDQMNQSVSNELAPGTKDLADGTSQLADKWNSSIEGAKKLDAGAGQLNTG 555
Cdd:COG5295   395 SAGSGGSSTGASAGGGASAAGGAAAGSAAAGTSSNTSAVGASNGASGTSSSASSAGAAGGGTAGAGGAANVGAATTAASA 474

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 556 ISSLDNGLGQLQTGSGKLTSGLGTLSNGTNSLANGMGKLQNGSTQLTTGLGTLSNGTKSLVGGIGQLQAGSGQLSTGLGT 635
Cdd:COG5295   475 AATAAAATSSAAIAGATATGAGAAAGGAGAGAAGGAGSAAAGGAANAAAASGATATAGSAGGGAAAAAGGGSTTAATGTN 554

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2254477256 636 LSNGTKSLVGGMGQLQTGSGQLATGLDTLSNGTKSLVSGSAQLSDGSSQLASGAGELQDGA 696
Cdd:COG5295   555 SVAVGNNTATGANSVALGAGSVASGANSVSVGAAGAENVAAGATDTDAVNGGGAVATGDNS 615
PRK15319 PRK15319
fibronectin-binding autotransporter adhesin ShdA;
207-721 1.22e-05

fibronectin-binding autotransporter adhesin ShdA;


Pssm-ID: 185219 [Multi-domain]  Cd Length: 2039  Bit Score: 49.31  E-value: 1.22e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  207 SAKEGSTKLNNGAQSAKNGAYDLKNGVD--------SAANGANKLNDGASSAATGAKDlENGINSAADGA--NKLNDG-- 274
Cdd:PRK15319   555 SAMPDYLTINAGVDANDNTNYELSTGLSwyagansaRAAHGTFTVDAGSTFTVTSELD-ETTATSNWNGSklTKQGDGtl 633

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  275 --ANSATT-GAKDLENGINSAADGANKVNDGAQSAINGSKDLQNG-INSAKSGSTQLqtgssdLKKGTESLVSGLEGNTA 350
Cdd:PRK15319   634 ilSNTGNDyGDTEIDGGILAAKDAAALGTGDVTIAESATLALSQGtLDNNVTGEGQI------VKSGSDELIVTGDNNYS 707

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  351 nikalndGAQKVNNGVATLSGGLSqLAPGAADvSNGVTKLvdGLGEIPNQI----QSLKTGVANLNGGAADLTNGTQTLS 426
Cdd:PRK15319   708 -------GGTTISGGTLTADHADS-LGSGDVD-NSGVLKV--GEGELENILsgsgSLVKTGTGELTLSGDNTYSGGTTIT 776

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  427 AGTKKL----------IQQINAMDIPE-EQKQALLQTANVVNQGASEVD-SGAKKLSAGTSVLNQSVSGINAPTTGelsk 494
Cdd:PRK15319   777 GGTLTAdhadslgsgdIDNSGVLKVGEgDLENTLSGSGSLVKTGTGELTlSGGNDYSGGTTIIGGTLTADHADSLG---- 852

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  495 lkQGAAKVSTSLDQMNQSVSNELAPGTKDLADGTSQLADKWNSSIEGAKKLDAG---AGQLNT-GISSLDNGlGQLQTGS 570
Cdd:PRK15319   853 --SGDIDNSGVLQVGEGELKNTLFGSGSLVKTGTGELTLNGDNDYSGGTTIDDGvliADHADSlGTGAVANS-GVLQVGE 929

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  571 GKLTSglgTLSNGTNSLANGMGKLQNGSTQLTTGLGTLSNGTKSLVG----GIGQLqAGSGQLSTGLGTLSNgtkSLVGG 646
Cdd:PRK15319   930 GELKN---TLSGSGSLVKTGTGELTLSGDNSYSGGTTIIGGTLIADHadslGTGAV-ANSGVLQVGEGELEN---TLSGS 1002

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2254477256  647 MGQLQTGSGQLATGLDTLSNGTKSLVSGSAQLSD----GSSQLASGAGELQDGAGKLQGKLADAHDQASKIKANQKTYD 721
Cdd:PRK15319  1003 GSLVKTGTGELTLGGDNSYSGDTTIADGTLIAANvnalGSGNIDNSGTLMLDANGAFELANITTHSGATTALAAGSTLD 1081
xxxLxxG_by_4 TIGR03057
X-X-X-Leu-X-X-Gly heptad repeats; This model represents a 28-column alignment, comprising four ...
 675-700 5.01e-03

X-X-X-Leu-X-X-Gly heptad repeats; This model represents a 28-column alignment, comprising four tandem sets of seven residues each, in which the fourth residue tends to be Leu and the seventh tends to be Gly in each set. This heptad periodicity, corresponding to two turns of an alpha helix, suggests alpha-helical structure; in many proteins this 28-region model hits many times in tandem. Arrangement of these sequences on a helical wheel would show a strict alternation of Leu and Gly residues on one side of the helix, that is, an extremely bulky side chain alternating with the virtual absence of one. This suggests an extended zippering of one alpha helix to another, analogous to the shorter leucine zippers found in many dimerizing transcription factors. Proteins in which these heptad repeats occur often have higher order repeats of a unit comprised of several heptads.


Pssm-ID: 274412  Cd Length: 28  Bit Score: 35.39  E-value: 5.01e-03
                          10        20
                  ....*....|....*....|....*.
gi 2254477256 675 SAQLSDGSSQLASGAGELQDGAGKLQ 700
Cdd:TIGR03057   1 SGQLADGAGQLASGAGQLASGANQLA 26
auto_Ata NF033481
trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an ...
 170-437 8.58e-03

trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an architecture that consists of a long signal peptide, a repetitive passenger domain that varies in length from strain to strain, and a C-terminal domain of four transmembrane beta stands that forms one third of the pore for autotransporter activity and anchoring in the outer membrane.


Pssm-ID: 411124 [Multi-domain]  Cd Length: 1862  Bit Score: 40.23  E-value: 8.58e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  170 IKKMGNGFGDAADGAGKLATGAGKLDKGANQLNEGVQSAKEGSTKLNNGAQSAKNGAYDLKNGVDSAANGA-NKLNDGA- 247
Cdd:NF033481   539 VQAVGTGAFSSAFGMTSKATGDASSAFGVMSNASGKGAAAFGAVAQATGDGASAMGINSLASGTNSTAIGSgNKPGEGAk 618

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  248 ----SSAATGAKDLENGINSAADGANKLNDGANSATTGAKDLENGINSAADGANKVND---------GAQSAINGSKDL- 313
Cdd:NF033481   619 atgnSSAAIGSGAQATGDNSAAIGKGAEATNENAAAVGGGAKATGKNAAAIGGGAIADqenavavgqGAQSLVEGGVALg 698

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  314 -------QNGINSAKSGSTQLQTGSS-----DLKKGTESLVSGLEGNTANIKALNDGA--------QKVNNGVATLSGGL 373
Cdd:NF033481   699 arskveaKNSVALGQDAVATEATGTSfltnrDASQSNGVISVGSAGKERRITNVEDGSadsdavtvRQLKNVDSRVNQNT 778

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2254477256  374 SQLAPGAADVSNGVTKLVDGLGEIPNQIQSLKTGVANLNGGAADLTNGTQTLSAGTK-KLIQQIN 437
Cdd:NF033481   779 SNIGKNTQNITNLNQKLDDTKTNLGNQITDTNKNLNDAKKDLGNQITDTNTKLNTTKdQLTTQIN 843
 
Name Accession Description Interval E-value
pip_yhgE_Cterm TIGR03062
YhgE/Pip C-terminal domain; This family contains the C-terminal domain of a family of multiple ...
 720-925 3.95e-76

YhgE/Pip C-terminal domain; This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.


Pssm-ID: 274414 [Multi-domain]  Cd Length: 208  Bit Score: 247.49  E-value: 3.95e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 720 YDMVGEPVEVEKQEVNKVPTYGTGFAPFMLSLGLFVGALMLSIIYPFVDAAIRPKNGFSW--FLSKVSVLAVVGLVQSTL 797
Cdd:TIGR03062   1 AKMVAEPVKLKHSDYDDVPNYGTGLAPYFLSLALFVGALVLNLIFPPLSRRALPKSARSWriALAKLLPGGLIGVIQAII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 798 VVIIALFFLKIEVVNVPAFIFMTVLASYTFLALIQMLVSILDNPGRFIAIIILVLQLTTSAGTFPLELVSKPLQVFNKFL 877
Cdd:TIGR03062  81 LYGVLILALGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGSVGRFLALVLLVLQLGSSGGTFPIELLPAFFQAIHPFL 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2254477256 878 PMTYSIQGFRAAISTGDMSFFAFNAVVLISCMVVFLIITCGYFVLRYK 925
Cdd:TIGR03062 161 PMTYSVNGLRQLISGGDDSTLWQAVAVLLLILVIFLALSLLSARRKRR 208
pip_yhgE_Nterm TIGR03061
YhgE/Pip N-terminal domain; This family contains the N-terminal domain of a family of multiple ...
 4-167 2.02e-66

YhgE/Pip N-terminal domain; This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.


Pssm-ID: 274413 [Multi-domain]  Cd Length: 164  Bit Score: 219.38  E-value: 2.02e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256   4 AEWSAIFHSKKVLVAIIAILFVPIIYAGTYLWAYWDPYSHLDELPVAIVNDDTGAKLDGKKQNLGNDLVERLIDSNKFKF 83
Cdd:TIGR03061   1 SELKRLRKNKLLRIALIAIMLIPLLYGGLFLWAFWDPYGNLDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  84 KEVSDSAGKDGLKNRDYYLEILIPKDFTKNAGSLLEDDPEQMKIIYRPNEGYNFLGSQIGNSAIELVRKEVNKQVSATYA 163
Cdd:TIGR03061  81 HFVSAKEAEKGLADGKYYMVITIPEDFSENATSLLDDQPKKAQLIYKTNDANNYIASQIAESAAEKVKTSVSKSITETYA 160


                  ....
gi 2254477256 164 KTLF 167
Cdd:TIGR03061 161 ETIF 164
YhgE COG1511
Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown]; ...
 2-166 1.08e-64

Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown];


Pssm-ID: 441120  Cd Length: 225  Bit Score: 217.12  E-value: 1.08e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256   2 IKAEWSAIFHSKKVLVAIIAILFVPIIYAGTYLWAYWDPYSHLDELPVAIVNDDTGAKLDGKKQNLGNDLVERLIDSNKF 81
Cdd:COG1511     1 FKRELKRLFKNKLALIALIALILVPLLYAGLYLWAFWDPYGNLDNLPVAVVNEDKGATVDGKTVNLGDELVDELKDNDSF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  82 KFKEVSDSAGKDGLKNRDYYLEILIPKDFTKNAGSLLEDDPEQMKIIYRPNEGYNFLGSQIGNSAIELVRKEVNKQVSAT 161
Cdd:COG1511    81 DWQFVSEEEAEKGLKDGKYYAVIVIPEDFSANLASLLSDDPEKATITYYTNEANNYLASKITDTAATTVVDQVNSQVTET 160


                  ....*
gi 2254477256 162 YAKTL 166
Cdd:COG1511   161 YAETV 165
YadH COG0842
ABC-type multidrug transport system, permease component [Defense mechanisms];
740-930 8.04e-19

ABC-type multidrug transport system, permease component [Defense mechanisms];


Pssm-ID: 440604 [Multi-domain]  Cd Length: 200  Bit Score: 85.64  E-value: 8.04e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 740 YGTGFAPFMLSLGLFVGALM---LSIIYPFVDAAIR-----PKNGFSWFLSKVSVLAVVGLVQSTLVVIIALFFLKIEV- 810
Cdd:COG0842     1 YLAFLVPGLLAMSLLFTALMltaLSIAREREQGTLErllvtPVSRLEILLGKVLAYLLRGLLQALLVLLVALLFFGVPLr 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 811 -VNVPAFIFMTVLASYTFLALIQMLVSILDNPGRFIAIIILVLQLTT--SAGTFPLELVSKPLQVFNKFLPMTYSIQGFR 887
Cdd:COG0842    81 gLSLLLLLLVLLLFALAFSGLGLLISTLARSQEQASAISNLVILPLTflSGAFFPIESLPGWLQAIAYLNPLTYFVEALR 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2254477256 888 AAISTG-DMSFFAFNAVVLISCMVVFLIITcgyfVLRYKKRFSR 930
Cdd:COG0842   161 ALFLGGaGLADVWPSLLVLLAFAVVLLALA----LRLFRRRLRG 200
ABC2_membrane_3 pfam12698
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 735-916 1.32e-15

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.


Pssm-ID: 463674 [Multi-domain]  Cd Length: 345  Bit Score: 79.36  E-value: 1.32e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 735 NKVPTYGTGFAPFMLSLGLFVGAL--MLSIIYPFVDAAIR-----PKNGFSWFLSKVSVLAVVGLVQSTLVVIIAlFFLK 807
Cdd:pfam12698 154 NPQSGYAYYLVGLILMIIILIGAAiiAVSIVEEKESRIKErllvsGVSPLQYWLGKILGDFLVGLLQLLIILLLL-FGIG 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 808 IEVVNVPAFIFMTVLASYTFLALIQMLVSILDNPGRFIAIIILVLQLTT--SAGTFPLELVSKPLQVFNKFLPMTYSIQG 885
Cdd:pfam12698 233 IPFGNLGLLLLLFLLYGLAYIALGYLLGSLFKNSEDAQSIIGIVILLLSgfFGGLFPLEDPPSFLQWIFSIIPFFSPIDG 312

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2254477256 886 FRAAISTGDMSFFAFNAVVLISCMVVFLIIT 916
Cdd:pfam12698 313 LLRLIYGDSLWEIAPSLIILLLFAVVLLLLA 343
YhgE COG1511
Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown]; ...
 718-779 3.90e-11

Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown];


Pssm-ID: 441120  Cd Length: 225  Bit Score: 63.81  E-value: 3.90e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2254477256 718 KTYDMVGEPVEVEKQEVNKVPTYGTGFAPFMLSLGLFVGALMLSIIYPFVDAAiRPKNGFSW 779
Cdd:COG1511   159 ETYAETVSPVALKTEALNPVPNYGSGLAPFFLSLALWVGALLLFLLLRPLVDR-AGASLDRL 219
TagG COG1682
ABC-type polysaccharide/teichoic acid/polyol phosphate export permease [Carbohydrate transport ...
 736-931 7.23e-11

ABC-type polysaccharide/teichoic acid/polyol phosphate export permease [Carbohydrate transport and metabolism];


Pssm-ID: 441288 [Multi-domain]  Cd Length: 258  Bit Score: 63.67  E-value: 7.23e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 736 KVPTYGTGFAPFMLSlGLFVgalmlsiIYPFVDAAIRPKNGFSW---FLSKVSV------LAVVG------LVQSTLVVI 800
Cdd:COG1682    55 RAPSGGVPYALFLLA-GLLP-------WNFFSEALNRGSGSIVAnagLIKKVYFpreilpLARVLsalvnfLISLVVLLV 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 801 IALFF---LKIEVVNVPAFIFMTVLasytFLALIQMLVSILdNP-----GRFIAIIILVLQLTTSAGtFPLELVSKPLQV 872
Cdd:COG1682   127 VLLLFgvpPSWTLLLLPLALLLLLL----FGLGLGLLLAAL-NVffrdvQQIVGLLLQLLFFLSPVF-YPLSTLPEPLRW 200

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 873 FNKFLPMTYSIQGFRAAISTGDMSFFAFNAVVLISCMVVFLIitcGYFVL-RYKKRFSRE 931
Cdd:COG1682   201 LLLLNPLTHIIELFRAALLGGYLPDWLSLLYALLVSLVLLLL---GLLLFrRLRRRFADV 257
ABC2_membrane pfam01061
ABC-2 type transporter;
777-889 2.11e-10

ABC-2 type transporter;


Pssm-ID: 426023 [Multi-domain]  Cd Length: 204  Bit Score: 61.14  E-value: 2.11e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 777 FSWFLSKVSVLAVVGLVQSTLVVIIALFF--LKIEVVNVPAFIFMTVLASYTFLALIQMLVSILDNP--GRFIAIIILVL 852
Cdd:pfam01061  88 SAYVLAKILSELPLSLLQSLIFLLIVYFMvgLPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFedASQLGPLVLLP 167

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2254477256 853 QLTTSAGTFPLELVSKPLQVFNKFLPMTYSIQGFRAA 889
Cdd:pfam01061 168 LLLLSGFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN 204
COG4587 COG4587
ABC-type uncharacterized transport system, permease component [General function prediction ...
 771-929 4.55e-07

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443644 [Multi-domain]  Cd Length: 266  Bit Score: 52.12  E-value: 4.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 771 IRPKN-GFSWFLSKVSVLAVVGLVQSTLVVIIALFFLKIEV----VNVPAFIFMTVLAsYTFLALIQMLVSIL-----DN 840
Cdd:COG4587    97 LRPVDyLLYWLARDLGERLFRLLFRLLPVLLVALLLFGLALpaslLAWLLFLLSLLLA-FLINFLIQYLIGLLafwteEI 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 841 PG--RFIAIIILVLqlttSAGTFPLELVSKPLQVFNKFLPMTYSIQgFRAAISTGDMSFFAFNAVVLISCM-VVFLIITC 917
Cdd:COG4587   176 SGilRLKNVLVLFL----SGLLIPLDLFPEWLQTILLWLPFPYIVY-FPASILLGRLSGAEALRGLLIQLFwLVVLLLLG 250

                         170
                  ....*....|..
gi 2254477256 918 GYFVLRYKKRFS 929
Cdd:COG4587   251 RLLWRRGLRRYV 262
auto_Ata NF033481
trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an ...
 171-701 1.73e-06

trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an architecture that consists of a long signal peptide, a repetitive passenger domain that varies in length from strain to strain, and a C-terminal domain of four transmembrane beta stands that forms one third of the pore for autotransporter activity and anchoring in the outer membrane.


Pssm-ID: 411124 [Multi-domain]  Cd Length: 1862  Bit Score: 52.17  E-value: 1.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  171 KKMGNGFGDAA--DGAGKLATGAGKLDKGANQLNEGVQSAKE---------------------GSTKLNNGAQSAKNGAY 227
Cdd:NF033481   136 KGLGTAIGSYAttQGISGVAIGTGALSSGNTALAVGRQSAATadfsqaignvaaatgkgslaiGHSATAEGYRSIAIGSP 215

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  228 DLKNGVDSAANGANKLNDGASSAATGAKDLENGINSAADGANKLNDGANSATTGAKDLENGINSAA--DGANKVNDGAQS 305
Cdd:NF033481   216 DIENADPVAGQAGAAYQPKMATKATGKDSIAFGGGAVATEENALAIGAFSESKGKKSVAIGTGAKAqkDNAVVIGDQAEA 295

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  306 AINGSKDLQNGINSAKSGSTQLQTGSSDLKKGTESLVSGLEGNTANIKALNDGAQKvnngvatlsgGLSQLAPGAADVSN 385
Cdd:NF033481   296 SFEGGVAIGKGARSEAENSIALGKDSKASQATGESFLTKQSAPTGVLSIGDIGTER----------RIQNVADGAADSDA 365

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  386 GVTKlvdglgeipnQIQSLKTGVANLNGGAADLTNGTQTLSAGTKKLIQQINAMDIPEEqKQALLQTANVVNQGASEVDS 465
Cdd:NF033481   366 ATVR----------QLKAARTHYVSINDNGQQGGNFENDGATGRNAIAVGVNASAAGRE-AMAIGGSAQAIGSGAIAMGS 434

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  466 GAKKLSAGTSVLNQSVSginapttgelsklKQGAAKVSTsldqmNQSVS---NELAPGTKDLADGTSQLADKWNSSIEGA 542
Cdd:NF033481   435 SSQTVGRGDVAIGRNAS-------------TQGAEGVNS-----NQSVAigdQTKAIGDQSVAIGADVIAKGNSSVAIGG 496

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  543 KKLDAGAGQLNTGISSLDNGLGQLQTGSGKLT------SGLGTLSNGTNSLANGMGKLQNGSTQLTTGLGTLSNGTKSLV 616
Cdd:NF033481   497 DDVDKIARDTELSNTYTEITGGTLQAGKYPTTeanhgsTAVGVQAVGTGAFSSAFGMTSKATGDASSAFGVMSNASGKGA 576

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  617 GGIGQL--QAGSGQLSTGLGTLSNGTKSLVGGMGQlQTGSGQLATGldtlsNGTKSLVSGSAQLSDGSSQLASGAGELQD 694
Cdd:NF033481   577 AAFGAVaqATGDGASAMGINSLASGTNSTAIGSGN-KPGEGAKATG-----NSSAAIGSGAQATGDNSAAIGKGAEATNE 650


                   ....*..
gi 2254477256  695 GAGKLQG 701
Cdd:NF033481   651 NAAAVGG 657
ABC2_membrane_3 pfam12698
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 19-171 4.95e-06

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.


Pssm-ID: 463674 [Multi-domain]  Cd Length: 345  Bit Score: 49.70  E-value: 4.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  19 IIAILFVPIIYAGTYLWAYWDPYSHLDELPVAIVNDDtgakldgkKQNLGNDLVERLIDSNKFKFKEVSDS--AGKDGLK 96
Cdd:pfam12698   4 LIITLLLPILLILLLGLIFSNAVNDPEELPVAVVDED--------NSSLSRQLVRALEASPTVNLVQYVDSeeEAKEALK 75

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2254477256  97 NRDYYLEILIPKDFTKNagsLLEDDPEQMKIIYrpnEGYNFLGSQIGNSAIELVRKEVNKQVSATYAKTLFANIK 171
Cdd:pfam12698  76 NGKIDGLLVIPKGFSKD---LLKGESATVTVYI---NSSNLLVSKLILNALQSLLQQLNASALVLLLEALSTSAP 144
Hia COG5295
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, ...
 158-696 6.45e-06

Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444098 [Multi-domain]  Cd Length: 785  Bit Score: 50.15  E-value: 6.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 158 VSATYAKTLFANIKKMGNGFGDAADGAGKLATGAGKLDKGANQLNEGV--QSAKEGSTKLNNGAQSAKNGAYDLKNGVDS 235
Cdd:COG5295    83 VASGGASAATAASTGTGNTAGTAATVAGAASSGSATNAGASAGASAAAaaGSTAAAGGAAASTGGSSAAGGSNTATATGS 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 236 AANGANKLNDGASSAATGAKDLENGINSAADGANKLNDGANSATTGAKDLENGINSAADGANKVNDGAQSAINGSKDLQN 315
Cdd:COG5295   163 STANAATAAAGATSTSASGSSSGASGAAAASAATGASAGGTASAAASASSSATGTSASVGVNAGAATGSAASAGGSASAG 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 316 GINSAKSGSTQLQTGSSDLKKGTESlvsGLEGNTANIKALNDGAQKVNNGVATLSGGLSQLAPGAADVSNGVTKLVDGLG 395
Cdd:COG5295   243 AASGNATTASASSVSGSAVAAGTAS---TATTASTTAASGAAGTATAAAGGDAAAAGSASSTGAANATAGGGNAGSGGGG 319

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 396 EIPNQIQSLKTGVANLNGGAADLTNGTQTLSAGTKKLIQQINAmdipeEQKQALLQTANVVNQGASEVDSGAKKLSAGTS 475
Cdd:COG5295   320 AAALGSAGGSSGVGTASGASAAAATNDGTANGAGTSAAADATS-----GGGAGGGGAAATSSSGGSATAAGNAAGAAGAG 394

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 476 VLNQSVSGINAPTTGELSKLKQGAAKVSTSLDQMNQSVSNELAPGTKDLADGTSQLADKWNSSIEGAKKLDAGAGQLNTG 555
Cdd:COG5295   395 SAGSGGSSTGASAGGGASAAGGAAAGSAAAGTSSNTSAVGASNGASGTSSSASSAGAAGGGTAGAGGAANVGAATTAASA 474

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 556 ISSLDNGLGQLQTGSGKLTSGLGTLSNGTNSLANGMGKLQNGSTQLTTGLGTLSNGTKSLVGGIGQLQAGSGQLSTGLGT 635
Cdd:COG5295   475 AATAAAATSSAAIAGATATGAGAAAGGAGAGAAGGAGSAAAGGAANAAAASGATATAGSAGGGAAAAAGGGSTTAATGTN 554

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2254477256 636 LSNGTKSLVGGMGQLQTGSGQLATGLDTLSNGTKSLVSGSAQLSDGSSQLASGAGELQDGA 696
Cdd:COG5295   555 SVAVGNNTATGANSVALGAGSVASGANSVSVGAAGAENVAAGATDTDAVNGGGAVATGDNS 615
Hia COG5295
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, ...
 174-654 8.70e-06

Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444098 [Multi-domain]  Cd Length: 785  Bit Score: 49.77  E-value: 8.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 174 GNGFGDAADGAGKLATGAGKLDKGANQLNEGVQSAKEGSTKLNNGAQSAKNGAYDLKNGVDSAANGANKLNDGASSAATG 253
Cdd:COG5295   182 SSSGASGAAAASAATGASAGGTASAAASASSSATGTSASVGVNAGAATGSAASAGGSASAGAASGNATTASASSVSGSAV 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 254 AKDLENGINSAADGANKLNDGANSATTGAKDLENGINSAADGANKVNDGAQSAINGSKDLQNGINSAKSGSTQLQTGSSD 333
Cdd:COG5295   262 AAGTASTATTASTTAASGAAGTATAAAGGDAAAAGSASSTGAANATAGGGNAGSGGGGAAALGSAGGSSGVGTASGASAA 341

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 334 LKKGTESLVSGLEGNTANIKALNDGAQKVNNGVATLSGGLSQLAPGAADVSNGVTKLVDGLGEIPNQIQSLKTGVANLNG 413
Cdd:COG5295   342 AATNDGTANGAGTSAAADATSGGGAGGGGAAATSSSGGSATAAGNAAGAAGAGSAGSGGSSTGASAGGGASAAGGAAAGS 421

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 414 GAADLTNGTQTLSAGTKKLIQQINAMDIPEEQKQALLQTANVVNQGASEVDSGAKKLSAGTSVLNQSVSGINAPTTGELS 493
Cdd:COG5295   422 AAAGTSSNTSAVGASNGASGTSSSASSAGAAGGGTAGAGGAANVGAATTAASAAATAAAATSSAAIAGATATGAGAAAGG 501

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 494 KLKQGAAKVSTSLDQMNQSVSNELAPGTKDLADGTSQLADKWNSSIEGAKKLDAGAGQLNTGISSLDNGLGQLQTGSGKL 573
Cdd:COG5295   502 AGAGAAGGAGSAAAGGAANAAAASGATATAGSAGGGAAAAAGGGSTTAATGTNSVAVGNNTATGANSVALGAGSVASGAN 581

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 574 TSGLGTLSNGTNSLANGMGKLQNGSTQLTTGLGTLSNGTKSLVGGIGQLQAGSGQLSTGLGTLSNGTKSLVGGMGQLQTG 653
Cdd:COG5295   582 SVSVGAAGAENVAAGATDTDAVNGGGAVATGDNSVAVGNNAQASGANSVALGAGATATANNSVALGAGSVADRANTVSVG 661


                  .
gi 2254477256 654 S 654
Cdd:COG5295   662 S 662
PRK15319 PRK15319
fibronectin-binding autotransporter adhesin ShdA;
207-721 1.22e-05

fibronectin-binding autotransporter adhesin ShdA;


Pssm-ID: 185219 [Multi-domain]  Cd Length: 2039  Bit Score: 49.31  E-value: 1.22e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  207 SAKEGSTKLNNGAQSAKNGAYDLKNGVD--------SAANGANKLNDGASSAATGAKDlENGINSAADGA--NKLNDG-- 274
Cdd:PRK15319   555 SAMPDYLTINAGVDANDNTNYELSTGLSwyagansaRAAHGTFTVDAGSTFTVTSELD-ETTATSNWNGSklTKQGDGtl 633

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  275 --ANSATT-GAKDLENGINSAADGANKVNDGAQSAINGSKDLQNG-INSAKSGSTQLqtgssdLKKGTESLVSGLEGNTA 350
Cdd:PRK15319   634 ilSNTGNDyGDTEIDGGILAAKDAAALGTGDVTIAESATLALSQGtLDNNVTGEGQI------VKSGSDELIVTGDNNYS 707

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  351 nikalndGAQKVNNGVATLSGGLSqLAPGAADvSNGVTKLvdGLGEIPNQI----QSLKTGVANLNGGAADLTNGTQTLS 426
Cdd:PRK15319   708 -------GGTTISGGTLTADHADS-LGSGDVD-NSGVLKV--GEGELENILsgsgSLVKTGTGELTLSGDNTYSGGTTIT 776

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  427 AGTKKL----------IQQINAMDIPE-EQKQALLQTANVVNQGASEVD-SGAKKLSAGTSVLNQSVSGINAPTTGelsk 494
Cdd:PRK15319   777 GGTLTAdhadslgsgdIDNSGVLKVGEgDLENTLSGSGSLVKTGTGELTlSGGNDYSGGTTIIGGTLTADHADSLG---- 852

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  495 lkQGAAKVSTSLDQMNQSVSNELAPGTKDLADGTSQLADKWNSSIEGAKKLDAG---AGQLNT-GISSLDNGlGQLQTGS 570
Cdd:PRK15319   853 --SGDIDNSGVLQVGEGELKNTLFGSGSLVKTGTGELTLNGDNDYSGGTTIDDGvliADHADSlGTGAVANS-GVLQVGE 929

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  571 GKLTSglgTLSNGTNSLANGMGKLQNGSTQLTTGLGTLSNGTKSLVG----GIGQLqAGSGQLSTGLGTLSNgtkSLVGG 646
Cdd:PRK15319   930 GELKN---TLSGSGSLVKTGTGELTLSGDNSYSGGTTIIGGTLIADHadslGTGAV-ANSGVLQVGEGELEN---TLSGS 1002

                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2254477256  647 MGQLQTGSGQLATGLDTLSNGTKSLVSGSAQLSD----GSSQLASGAGELQDGAGKLQGKLADAHDQASKIKANQKTYD 721
Cdd:PRK15319  1003 GSLVKTGTGELTLGGDNSYSGDTTIADGTLIAANvnalGSGNIDNSGTLMLDANGAFELANITTHSGATTALAAGSTLD 1081
AidA COG3468
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ...
 211-650 4.12e-05

Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442691 [Multi-domain]  Cd Length: 846  Bit Score: 47.63  E-value: 4.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 211 GSTKLNNGAQSAKNGAYDLKNGVDSAANGANKLNDGASSAATGAKDLENGINSAADGANKLNDGANSATTGAKDLENGIN 290
Cdd:COG3468     8 GATGLGGGGTGGGGGLGGTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAGSGGTGGN 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 291 SAADGANKVNDGAQSAINGSKDLQNGINSAKSGSTQLQTGSSDLKKGTESLVSGLEGNTANIKALNDGAQKVNNGVATLS 370
Cdd:COG3468    88 STGGGGGNSGTGGTGGGGGGGGSGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGGTGSGGGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 371 GGLSQLAPGAADVSNGVTKLVDGLGEIPNQIQSLKTGVANLNGGAADLTNGTQTLSAGTKKLIQQINAMDIpeeqkqall 450
Cdd:COG3468   168 SGGGGGAGGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGV--------- 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 451 qTANVVNQGASEVDSGAKKLSAGTSVLNQSVSGINAPTTGELSKLKQGAAKVSTSLDQMNQSVSNELAPGTKDLADGTSQ 530
Cdd:COG3468   239 -GGGGGSAGGTGGGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGGGGGNGGGGG 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 531 LADKWNSSIEGAKKLDAGAGQLNTGISSLDNGLGqLQTGSGKLTSGLGTLSNGTNSLANGMGKLQNGSTQLTTGLGTLSN 610
Cdd:COG3468   318 GGSNAGGGSGGGGGGGGGGGGGGTTLNGAGSAGG-GTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLT 396

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|
gi 2254477256 611 GTKSLVGGIGQLQAGSGQLSTGLGTLSNGTKSLVGGMGQL 650
Cdd:COG3468   397 TGGTGNNGGGGVGGGGGGGLTLTGGTLTVNGNYTGNNGTL 436
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 180-697 6.28e-05

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 47.07  E-value: 6.28e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  180 AADGAGKLATGAGKLDKGANQLNEGVQSAKEGSTKLNNGAQSAKNGAYDLKNGVDSAANGANKLNDGASSAATGAKDLEN 259
Cdd:COG3210    250 SLSVAAGAGTGGAGGTGNAGNTTIGTTVTGTNATGSNTAGASSGDTTTNGTSSVTGAGGTGVLGGGTAAGITTTNTVGGN 329

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  260 GINSAADGANKLNDGANSATTGAKDLENGINSAADGANKVNDGAQSAINGSKDLQNGINSAKSGSTQLQTGSSDLKKGTE 339
Cdd:COG3210    330 GDGNNTTANSGAGLVSGGTGGNNGTTGTGAGSGLTGTGNGGGLTTAGAGTVASTVGTATASTGNASSTTVLGSGSLATGN 409

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  340 SLVSGLEGNTANIKALNDGAQKVNNGVATLSGGLSQLAPGAADVSNGVTKLVDGLGEIPNQIQSLKTGVANLNGGAADLT 419
Cdd:COG3210    410 TGTTIAGNGGSANAGGFTTTGGVLGITGNGTVTGGTIGGLTGSGTTNGAGLSGNTDVSGTGTVTNSAGNTTSATTLAGGG 489

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  420 NGTQTLSAGTKKLIQQINAMDIPEEQKQALLQTANVVNQGASEVDSGAKKLSAGTSVLNQSVSGINAPTTGELSKLKQGA 499
Cdd:COG3210    490 IGTVTTNATISNNAGGDANGIATGLTGITAGGGGGGNATSGGTGGDGTTLSGSGLTTTVSGGASGTTAASGSNTANTLGV 569

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  500 AKVSTSLDQMNQSVSNELAPGTKDLADGTSQLADKWNSSIEGAKKLDAGAGQLNTGISSLDNGLGQLQTGSGKLTSGLGT 579
Cdd:COG3210    570 LAATGGTSNATTAGNSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGSAVGAALSGTGSG 649

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  580 LSNGTNSLANGMGKLQNGSTQLTTGLGTLSNGTKSLVGGIGQLQAGSGQLSTGLGTL--SNGTKSLVGGMGQLQTGSGQL 657
Cdd:COG3210    650 TTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLtiSTGSITVTGQIGALANANGDT 729

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|
gi 2254477256  658 ATGLDTLSNGTKSLVSGSAQLSDGSSQLASGAGELQDGAG 697
Cdd:COG3210    730 VTFGNLGTGATLTLNAGVTITSGNAGTLSIGLTANTTASG 769
PRK15048 PRK15048
methyl-accepting chemotaxis protein II; Provisional
 287-411 2.29e-03

methyl-accepting chemotaxis protein II; Provisional


Pssm-ID: 185008 [Multi-domain]  Cd Length: 553  Bit Score: 41.53  E-value: 2.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 287 NGINSAADGANKVNDGAQSAINGSKDLQNGINSAKSGSTQLQTGSSDLKKGTESLVSGLEGNTANIKALNDGA-QKVNNG 365
Cdd:PRK15048  242 DGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVkQNADNA 321

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2254477256 366 VATlsgglSQLAPGAADVSNGVTKLVDGLGEIPNQIQSLKTGVANL 411
Cdd:PRK15048  322 RQA-----SQLAQSASDTAQHGGKVVDGVVKTMHEIADSSKKIADI 362
xxxLxxG_by_4 TIGR03057
X-X-X-Leu-X-X-Gly heptad repeats; This model represents a 28-column alignment, comprising four ...
 675-700 5.01e-03

X-X-X-Leu-X-X-Gly heptad repeats; This model represents a 28-column alignment, comprising four tandem sets of seven residues each, in which the fourth residue tends to be Leu and the seventh tends to be Gly in each set. This heptad periodicity, corresponding to two turns of an alpha helix, suggests alpha-helical structure; in many proteins this 28-region model hits many times in tandem. Arrangement of these sequences on a helical wheel would show a strict alternation of Leu and Gly residues on one side of the helix, that is, an extremely bulky side chain alternating with the virtual absence of one. This suggests an extended zippering of one alpha helix to another, analogous to the shorter leucine zippers found in many dimerizing transcription factors. Proteins in which these heptad repeats occur often have higher order repeats of a unit comprised of several heptads.


Pssm-ID: 274412  Cd Length: 28  Bit Score: 35.39  E-value: 5.01e-03
                          10        20
                  ....*....|....*....|....*.
gi 2254477256 675 SAQLSDGSSQLASGAGELQDGAGKLQ 700
Cdd:TIGR03057   1 SGQLADGAGQLASGAGQLASGANQLA 26
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 158-697 5.60e-03

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 40.91  E-value: 5.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  158 VSATYAKTLFANIKKMGNGFGDAADGAGKLATGAGKLDKGANQLNEGVQSAKEGSTKLNNGAQSAKNGAYDLKNGVDSAA 237
Cdd:COG3210    620 TSGAGANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTL 699

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  238 NGANKLNDGASSAATGAKDLENGINSAADGANKLNDGANSATTGAKDLEngINSAADGANKVNDGAQSAINGSKDLQNGI 317
Cdd:COG3210    700 NNAGNTLTISTGSITVTGQIGALANANGDTVTFGNLGTGATLTLNAGVT--ITSGNAGTLSIGLTANTTASGTTLTLANA 777

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  318 NSAKSGSTQLQTGSSDLKKGTESLVSGLEGNTANIKALNDGAQKVNNGVATLSGGLSQLAPGAADVSNGVTKLVDGLGEI 397
Cdd:COG3210    778 NGNTSAGATLDNAGAEISIDITADGTITAAGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGA 857

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  398 PNQIQSLKTGVANLNGGAADLTNGTQTLSAGTKKLIQQINAMDIPEEQKQALLQTANVVNQGASEVDSGAKKLSAGTSVL 477
Cdd:COG3210    858 SGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTG 937

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  478 NQSVSGINAPTTGELSKLKQGAAKVSTSLDQMNQSVSNELAPGTKDLADGTSQLADKWNSSIEGAKKLDAGAGQLNTGIS 557
Cdd:COG3210    938 AGNGTTALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVA 1017

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  558 SLDNGLGQLQTGSGKLTSGLGTLSNGTNSLANGMGKLQNGSTQLTTGLGTLSNGTKSLVGGIGQLQAGSGQLSTGLGTLS 637
Cdd:COG3210   1018 GGNGVTGTTGTASATGTGTAATAGGQNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGI 1097

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  638 NGTKSLVGGMGQLQTGSGQLATGLDTLSNGTKSLVSGSAQLSDGSSQLASGAGELQDGAG 697
Cdd:COG3210   1098 TNGGATGTSGGTTTSTGGVTASKVGGTTTVGATGTSTASTEAAGAGTLTGLVAVSAVAGG 1157
PRK15041 PRK15041
methyl-accepting chemotaxis protein;
210-482 6.41e-03

methyl-accepting chemotaxis protein;


Pssm-ID: 185001 [Multi-domain]  Cd Length: 554  Bit Score: 40.32  E-value: 6.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 210 EGSTKLNNGAQSAKNGAYDLKNGVDSAANGANKLNDGASSAATGAKDLenginsaadgANKLNDGANSATTGAKDLENGI 289
Cdd:PRK15041  244 DGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDL----------SSRTEQQAASLEETAASMEQLT 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 290 NSAADGANKVNDGAQSAINGSKDLQNGinsAKSGSTQLQT-----GSSDLKKGTESLVSGLEGNTaNIKALNDG-----A 359
Cdd:PRK15041  314 ATVKQNAENARQASHLALSASETAQRG---GKVVDNVVQTmrdisTSSQKIADIISVIDGIAFQT-NILALNAAveaarA 389

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256 360 QKVNNGVATLSGGLSQLAPGAADVSNGV--------------TKLVDGLGEIPNQIQSLKTGVANLNGgaaDLTNGTQTL 425
Cdd:PRK15041  390 GEQGRGFAVVAGEVRNLAQRSAQAAREIksliedsvgkvdvgSTLVESAGETMAEIVSAVTRVTDIMG---EIASASDEQ 466

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2254477256 426 SAGTKKLIQQINAMDIPEEQKQALLQtanvvnqgasEVDSGAKKLSAGTSVLNQSVS 482
Cdd:PRK15041  467 SRGIDQVGLAVAEMDRVTQQNAALVE----------ESAAAAAALEEQASRLTEAVA 513
auto_Ata NF033481
trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an ...
 170-437 8.58e-03

trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an architecture that consists of a long signal peptide, a repetitive passenger domain that varies in length from strain to strain, and a C-terminal domain of four transmembrane beta stands that forms one third of the pore for autotransporter activity and anchoring in the outer membrane.


Pssm-ID: 411124 [Multi-domain]  Cd Length: 1862  Bit Score: 40.23  E-value: 8.58e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  170 IKKMGNGFGDAADGAGKLATGAGKLDKGANQLNEGVQSAKEGSTKLNNGAQSAKNGAYDLKNGVDSAANGA-NKLNDGA- 247
Cdd:NF033481   539 VQAVGTGAFSSAFGMTSKATGDASSAFGVMSNASGKGAAAFGAVAQATGDGASAMGINSLASGTNSTAIGSgNKPGEGAk 618

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  248 ----SSAATGAKDLENGINSAADGANKLNDGANSATTGAKDLENGINSAADGANKVND---------GAQSAINGSKDL- 313
Cdd:NF033481   619 atgnSSAAIGSGAQATGDNSAAIGKGAEATNENAAAVGGGAKATGKNAAAIGGGAIADqenavavgqGAQSLVEGGVALg 698

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254477256  314 -------QNGINSAKSGSTQLQTGSS-----DLKKGTESLVSGLEGNTANIKALNDGA--------QKVNNGVATLSGGL 373
Cdd:NF033481   699 arskveaKNSVALGQDAVATEATGTSfltnrDASQSNGVISVGSAGKERRITNVEDGSadsdavtvRQLKNVDSRVNQNT 778

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2254477256  374 SQLAPGAADVSNGVTKLVDGLGEIPNQIQSLKTGVANLNGGAADLTNGTQTLSAGTK-KLIQQIN 437
Cdd:NF033481   779 SNIGKNTQNITNLNQKLDDTKTNLGNQITDTNKNLNDAKKDLGNQITDTNTKLNTTKdQLTTQIN 843
xxxLxxG_by_4 TIGR03057
X-X-X-Leu-X-X-Gly heptad repeats; This model represents a 28-column alignment, comprising four ...
 570-597 8.86e-03

X-X-X-Leu-X-X-Gly heptad repeats; This model represents a 28-column alignment, comprising four tandem sets of seven residues each, in which the fourth residue tends to be Leu and the seventh tends to be Gly in each set. This heptad periodicity, corresponding to two turns of an alpha helix, suggests alpha-helical structure; in many proteins this 28-region model hits many times in tandem. Arrangement of these sequences on a helical wheel would show a strict alternation of Leu and Gly residues on one side of the helix, that is, an extremely bulky side chain alternating with the virtual absence of one. This suggests an extended zippering of one alpha helix to another, analogous to the shorter leucine zippers found in many dimerizing transcription factors. Proteins in which these heptad repeats occur often have higher order repeats of a unit comprised of several heptads.


Pssm-ID: 274412  Cd Length: 28  Bit Score: 34.62  E-value: 8.86e-03
                          10        20
                  ....*....|....*....|....*...
gi 2254477256 570 SGKLTSGLGTLSNGTNSLANGMGKLQNG 597
Cdd:TIGR03057   1 SGQLADGAGQLASGAGQLASGANQLADG 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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