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Conserved domains on  [gi|2260415310|ref|WP_252509102|]
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Ig-like domain-containing protein, partial [Acinetobacter baumannii]

Protein Classification

Ig-like domain-containing protein( domain architecture ID 1562905)

bacterial immunoglobulin (Ig)-like domain-containing protein may be a cell surface protein and may play an essential role in cell-to-cell recognition, adhesion, biofilm formation, and conjugative transfer

CATH:  2.60.40.10
PubMed:  9417933|10436082|33355339|34986320
SCOP:  3000070

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Big_6 super family cl39386
Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial ...
 5-72 2.94e-05

Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.


The actual alignment was detected with superfamily member pfam17936:

Pssm-ID: 465576 [Multi-domain]  Cd Length: 83  Bit Score: 37.99  E-value: 2.94e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2260415310  5 APNAPVLDPINATD-PVSGQAEPGSTVTVTYPDGTT-ATVVAGTDGSWSVPNPGNLVDGDTVTATATDPA 72
Cdd:pfam17936  1 APAAPTNLAVSDDGtTLTGTGEAGATVTVKDADGNVlGTGTVDADGTFSVTLDPAQANGETLSVTATDAA 70
 
Name Accession Description Interval E-value
Big_6 pfam17936
Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial ...
 5-72 2.94e-05

Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.


Pssm-ID: 465576 [Multi-domain]  Cd Length: 83  Bit Score: 37.99  E-value: 2.94e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2260415310  5 APNAPVLDPINATD-PVSGQAEPGSTVTVTYPDGTT-ATVVAGTDGSWSVPNPGNLVDGDTVTATATDPA 72
Cdd:pfam17936  1 APAAPTNLAVSDDGtTLTGTGEAGATVTVKDADGNVlGTGTVDADGTFSVTLDPAQANGETLSVTATDAA 70
 
Name Accession Description Interval E-value
Big_6 pfam17936
Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial ...
 5-72 2.94e-05

Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.


Pssm-ID: 465576 [Multi-domain]  Cd Length: 83  Bit Score: 37.99  E-value: 2.94e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2260415310  5 APNAPVLDPINATD-PVSGQAEPGSTVTVTYPDGTT-ATVVAGTDGSWSVPNPGNLVDGDTVTATATDPA 72
Cdd:pfam17936  1 APAAPTNLAVSDDGtTLTGTGEAGATVTVKDADGNVlGTGTVDADGTFSVTLDPAQANGETLSVTATDAA 70
Big_13 pfam19077
Bacterial Ig-like domain; Presumed domain found as tandem repeats of high sequence identity in ...
 21-72 9.95e-03

Bacterial Ig-like domain; Presumed domain found as tandem repeats of high sequence identity in bacterial cell surface proteins.


Pssm-ID: 465968 [Multi-domain]  Cd Length: 102  Bit Score: 31.85  E-value: 9.95e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2260415310  21 SGQAEPGSTVTVTY---PDGTTATVVAGTDGSWSVPNPGNLVDGD-TVTATATDPA 72
Cdd:pfam19077  32 TGTNEDGDVVTVTVsidGNGVTGTATAGADGNWSFTPPAALADGTyTLTVTVTDIA 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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