NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2275042237|ref|WP_254969441|]
View 

pentapeptide repeat-containing protein [Cyanobium sp. CH-040]

Protein Classification

pentapeptide repeat-containing protein( domain architecture ID 11442852)

pentapeptide repeat-containing protein (PRP) adopts a beta-helical structure and may have a targeting or structural function

CATH:  2.160.20.10
PubMed:  33925937|9655353

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
17-200 5.40e-33

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 116.58  E-value: 5.40e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  17 LRLGDLDGVDL---DLSGCDLHG----GCFKEARFGRACLQGANVEGCCFQqsliwGADLSHLKASHSQWHDADLSGSRL 89
Cdd:COG1357     2 LSGADLSGADLsgaDLSGADLSGanlsGALSGANLSGANLSGANLTGANLS-----GADLSGADLSGANLSGADLSGANL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  90 QHADFSAALLhrACLRGVLAAGSRWCDARLVEADFRSgldqlTDLGGADFQRADLSFAQLNGAQLRGADLRGCCLYGANV 169
Cdd:COG1357    77 TGADLSGANL--ANLSGANLSGANLSGANLRGANLSG-----ANLSGADLSGADLSGANLSGADLSGANLSGANLSGADL 149

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2275042237 170 TGADLREADLSGCDLRDTQLdaANLTGARIE 200
Cdd:COG1357   150 SGADLSGANLSGANLSGANL--ANLEGADLK 178
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
17-200 5.40e-33

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 116.58  E-value: 5.40e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  17 LRLGDLDGVDL---DLSGCDLHG----GCFKEARFGRACLQGANVEGCCFQqsliwGADLSHLKASHSQWHDADLSGSRL 89
Cdd:COG1357     2 LSGADLSGADLsgaDLSGADLSGanlsGALSGANLSGANLSGANLTGANLS-----GADLSGADLSGANLSGADLSGANL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  90 QHADFSAALLhrACLRGVLAAGSRWCDARLVEADFRSgldqlTDLGGADFQRADLSFAQLNGAQLRGADLRGCCLYGANV 169
Cdd:COG1357    77 TGADLSGANL--ANLSGANLSGANLSGANLRGANLSG-----ANLSGADLSGADLSGANLSGADLSGANLSGANLSGADL 149

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2275042237 170 TGADLREADLSGCDLRDTQLdaANLTGARIE 200
Cdd:COG1357   150 SGADLSGANLSGANLSGANL--ANLEGADLK 178
PRK15196 PRK15196
type III secretion system effector PipB2;
21-200 5.09e-14

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 69.26  E-value: 5.09e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  21 DLDGVDLDLSGCDlhGGCFKEARFGRACLQGANVEGCCFQQSLIWGADLSHlkashsqwhdADLSGSRLQHADfsaallh 100
Cdd:PRK15196  178 NLEGAVLFMADCE--GANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDH----------ANLTGANLQHAS------- 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237 101 racLRGVLAAGSRWCDARLveadfrsgldQLTDLGGADFQRADLSFAQLNGAQLRGADLRGCCLYGANV-----TGADLR 175
Cdd:PRK15196  239 ---LLGCSMIECNCSGANM----------DHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLrkasfISTNLD 305

                         170       180
                  ....*....|....*....|....*
gi 2275042237 176 EADLSGCDLRDTQLDAANLTGARIE 200
Cdd:PRK15196  306 GADLAEANLNNTCFKDCTLTHLRTE 330
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 147-186 5.69e-09

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 50.03  E-value: 5.69e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2275042237 147 AQLNGAQLRGADLRGCCLYGANVTGADLREADLSGCDLRD 186
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
17-200 5.40e-33

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 116.58  E-value: 5.40e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  17 LRLGDLDGVDL---DLSGCDLHG----GCFKEARFGRACLQGANVEGCCFQqsliwGADLSHLKASHSQWHDADLSGSRL 89
Cdd:COG1357     2 LSGADLSGADLsgaDLSGADLSGanlsGALSGANLSGANLSGANLTGANLS-----GADLSGADLSGANLSGADLSGANL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  90 QHADFSAALLhrACLRGVLAAGSRWCDARLVEADFRSgldqlTDLGGADFQRADLSFAQLNGAQLRGADLRGCCLYGANV 169
Cdd:COG1357    77 TGADLSGANL--ANLSGANLSGANLSGANLRGANLSG-----ANLSGADLSGADLSGANLSGADLSGANLSGANLSGADL 149

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2275042237 170 TGADLREADLSGCDLRDTQLdaANLTGARIE 200
Cdd:COG1357   150 SGADLSGANLSGANLSGANL--ANLEGADLK 178
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
28-201 8.15e-26

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 98.09  E-value: 8.15e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  28 DLSGCDLHGGCFKEARFGRACLQGANVEGCcfqqsliwgadlshlkashsqWHDADLSGSRLQHADFSAALLHRACLRGV 107
Cdd:COG1357     1 DLSGADLSGADLSGADLSGADLSGANLSGA---------------------LSGANLSGANLSGANLTGANLSGADLSGA 59

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237 108 LAAGSRWCDARLVEADFRsgldqltdlgGADFQRADLsfAQLNGAQLRGADLRGCCLYGANVTGADLREADLSGCDLRDT 187
Cdd:COG1357    60 DLSGANLSGADLSGANLT----------GADLSGANL--ANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGA 127

                         170
                  ....*....|....
gi 2275042237 188 QLDAANLTGARIEG 201
Cdd:COG1357   128 NLSGADLSGANLSG 141
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
79-202 6.66e-22

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 87.69  E-value: 6.66e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  79 WHDADLSGSRLQHADFSAALLHRACLRGVLAaGSRWCDARLVEADFRSGLDQLTDLGGADFQRADLSFAQLNGAQLRGAD 158
Cdd:COG1357     2 LSGADLSGADLSGADLSGADLSGANLSGALS-GANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGAD 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2275042237 159 LRGCCLY---GANVTGADLREADLSGCDLRDTQLDAANLTGARIEGV 202
Cdd:COG1357    81 LSGANLAnlsGANLSGANLSGANLRGANLSGANLSGADLSGADLSGA 127
PRK15196 PRK15196
type III secretion system effector PipB2;
21-200 5.09e-14

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 69.26  E-value: 5.09e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  21 DLDGVDLDLSGCDlhGGCFKEARFGRACLQGANVEGCCFQQSLIWGADLSHlkashsqwhdADLSGSRLQHADfsaallh 100
Cdd:PRK15196  178 NLEGAVLFMADCE--GANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDH----------ANLTGANLQHAS------- 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237 101 racLRGVLAAGSRWCDARLveadfrsgldQLTDLGGADFQRADLSFAQLNGAQLRGADLRGCCLYGANV-----TGADLR 175
Cdd:PRK15196  239 ---LLGCSMIECNCSGANM----------DHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLrkasfISTNLD 305

                         170       180
                  ....*....|....*....|....*
gi 2275042237 176 EADLSGCDLRDTQLDAANLTGARIE 200
Cdd:PRK15196  306 GADLAEANLNNTCFKDCTLTHLRTE 330
PRK15196 PRK15196
type III secretion system effector PipB2;
99-201 3.65e-09

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 55.40  E-value: 3.65e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  99 LHRACLRGVLAAGSRWCDARLVEADFRSGLDQLTDLGGADFQRADLSFAQLNGAQLRGADLR-----GCCLYGANVTGAD 173
Cdd:PRK15196  154 LKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEdsimcGATLDHANLTGAN 233

                          90       100
                  ....*....|....*....|....*...
gi 2275042237 174 LREADLSGCDLRDTQLDAANLTGARIEG 201
Cdd:PRK15196  234 LQHASLLGCSMIECNCSGANMDHTNLSG 261
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 147-186 5.69e-09

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 50.03  E-value: 5.69e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2275042237 147 AQLNGAQLRGADLRGCCLYGANVTGADLREADLSGCDLRD 186
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK15196 PRK15196
type III secretion system effector PipB2;
81-203 6.44e-09

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 54.63  E-value: 6.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  81 DADLSGsrlqhADFSAALLHRACLRGVLAAGSRWCDARLVEADFRSGLDQLTDLGGADFQRADLSFAQLNGAQLRGADLR 160
Cdd:PRK15196  171 DADLSG-----ANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMI 245

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2275042237 161 GCCLYGANVTGADLREADLSGCDLRDTQLDAANLTGARIEGVL 203
Cdd:PRK15196  246 ECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAV 288
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
133-204 8.32e-09

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 53.02  E-value: 8.32e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2275042237 133 DLGGADFQRADLSFAQLNGAQLRGADLRGCclyganVTGADLREADLSGCDLRDTQLDAANLTGARIEGVLW 204
Cdd:COG1357     1 DLSGADLSGADLSGADLSGADLSGANLSGA------LSGANLSGANLSGANLTGANLSGADLSGADLSGANL 66
PRK15197 PRK15197
type III secretion system effector PipB;
133-202 1.19e-08

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 53.78  E-value: 1.19e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237 133 DLGGADFQRADLSFAQLNGAQLRGADLRGCCLYGANVTGADLREADLSGCDLRDTQLDAANLTGARIEGV 202
Cdd:PRK15197  160 NLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGV 229
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 137-175 3.59e-08

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 47.72  E-value: 3.59e-08
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2275042237 137 ADFQRADLSFAQLNGAQLRGADLRGCCLYGANVTGADLR 175
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
PRK15197 PRK15197
type III secretion system effector PipB;
45-198 3.93e-08

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 52.24  E-value: 3.93e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  45 GRACLQGANVEGCCFQqsliwGADLSHLKASHSQWHDADLSGSRLQHADFSAALLHRACLRGvlaagsrwcdarlveadf 124
Cdd:PRK15197  152 GFLNLRGVNLAHKDFQ-----GEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMG------------------ 208

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2275042237 125 rsglDQLTDlggADFQRADLSFAQLNGAQLRGAdlrgcCLYGANVTGADLREADLSGCDLRDTQ-LDAANLTGAR 198
Cdd:PRK15197  209 ----SNMTK---ANLTHADLTCANMSGVNLTAA-----ILFGSDLTDTKLNGAKLDKIALTLAKaLTGADLTGSQ 271
PRK15197 PRK15197
type III secretion system effector PipB;
115-202 1.99e-07

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 49.93  E-value: 1.99e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237 115 CDARLVEADFRSGLDQLTDLGGADFQRADLSFAQLNGAQLRGADLRGCCLYGANVTGADLREADLS-------------- 180
Cdd:PRK15197  157 RGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTcanmsgvnltaail 236

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2275042237 181 -GCDLRDTQLDAAN-----------LTGARIEGV 202
Cdd:PRK15197  237 fGSDLTDTKLNGAKldkialtlakaLTGADLTGS 270
PRK15196 PRK15196
type III secretion system effector PipB2;
108-200 3.77e-07

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 49.23  E-value: 3.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237 108 LAAGSRWCDARLVEADFRSGLDQ--LTDLGGADFQRADLSFAQLN-----GAQLRGADLRGCCLYGANVTGADLREADLS 180
Cdd:PRK15196  121 LASFEKICRALLFRCEFSLPQDSviLTAQGGMNLKGAVLTGANLTaenlcDADLSGANLEGAVLFMADCEGANFKGANLS 200

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2275042237 181 GCDLRDTQ---------------LDAANLTGARIE 200
Cdd:PRK15196  201 GTSLGDSNfknacledsimcgatLDHANLTGANLQ 235
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 152-196 6.70e-07

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 44.25  E-value: 6.70e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2275042237 152 AQLRGADLRGCCLYGANVTGADLREADLSGCDLRDtqldaANLTG 196
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSG-----ANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 162-201 9.77e-07

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 43.87  E-value: 9.77e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2275042237 162 CCLYGANVTGADLREADLSGCDLRDTQLDAANLTGARIEG 201
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 132-171 5.43e-06

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 41.94  E-value: 5.43e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2275042237 132 TDLGGADFQRADLSFAQLNGAQLRGADLRGCCLYGANVTG 171
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
133-202 1.63e-05

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 41.49  E-value: 1.63e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237 133 DLGGADFQRADLSFAQLNGAQLRGADLRGCCLYGANVTGADLREADLSGCDLRDTQLDAANLTGARIEGV 202
Cdd:pfam13599   2 DFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDV 71
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
142-202 2.00e-05

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 41.49  E-value: 2.00e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2275042237 142 ADLSFAQLNGAQLRGADLRGCCLYGANVTGADLREADLSGCDLRDTQLDAANLTGARIEGV 202
Cdd:pfam13599   1 ADFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGC 61
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 167-202 2.68e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 40.02  E-value: 2.68e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2275042237 167 ANVTGADLREADLSGCDLRDTQLDAANLTGARIEGV 202
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGA 36
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
28-102 4.16e-04

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 37.64  E-value: 4.16e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2275042237  28 DLSGCDLHGGCFKEARFGRACLQGANVEGCCFQQSLIWGADLSHLKASHSQWHDADLSGSRLQHADFSAALLHRA 102
Cdd:pfam13599   2 DFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGA 76
PRK15197 PRK15197
type III secretion system effector PipB;
21-157 6.21e-04

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 39.53  E-value: 6.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  21 DLDGVDL---DLSGCDlhggcFKEARFGRACLQGANVegCCfqqsliwgADLSHLKASHSQWHDADLSGSRLQHADFSAA 97
Cdd:PRK15197  165 DFQGEDLsdiDASNAD-----FRETTLSNVNLVGANL--CC--------ANLHAVNLMGSNMTKANLTHADLTCANMSGV 229

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2275042237  98 LLHRACLRGvlaagsrwcdarlveADFRSgldqlTDLGGADFQRADLSFAQ-LNGAQLRGA 157
Cdd:PRK15197  230 NLTAAILFG---------------SDLTD-----TKLNGAKLDKIALTLAKaLTGADLTGS 270
PRK15196 PRK15196
type III secretion system effector PipB2;
151-201 1.25e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 38.83  E-value: 1.25e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2275042237 151 GAQLRGADLRGCCLYGANVTGADLREADLSGCDLRDTQLDAANLTGARIEG 201
Cdd:PRK15196  151 GMNLKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSG 201
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
57-139 4.49e-03

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 34.94  E-value: 4.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2275042237  57 CCFQQSLIWGADLSHLKASHSQWHDADLSGSRLQHADFSAALLHRACLRGVLAAGSRWCDARLVEADFRSGldqltDLGG 136
Cdd:pfam13599   1 ADFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDV-----KLKG 75


                  ...
gi 2275042237 137 ADF 139
Cdd:pfam13599  76 ADF 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH