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Conserved domains on  [gi|2279554533|ref|WP_256257692|]
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MULTISPECIES: sugar ABC transporter permease [unclassified Paenibacillus]

Protein Classification

ABC transporter permease( domain architecture ID 10008345)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0055085|GO:0140359|GO:0042626|GO:0016020
PubMed:  31571164|27273632|26517919|18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 20-326 5.14e-160

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 449.16  E-value: 5.14e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  20 TPNTLRQTKLRNRLWKERYLFLLLLPGLLYFIVYRYVPMLGNIIAFQDYSPFQGFLHSEWVGLQHFNKIFSDQEVIRVLW 99
Cdd:COG4209    10 RKKKKRKKSFLKRLKRDWQLYLMLLPGLIYLLIFSYLPMYGIVIAFKDYNPFKGIFGSPWVGLKNFKFLFSSPDFWRVLR 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 100 NTIFLSFLQIAFAFPVPIVLAVMLNELKNERYKRVVQSILYLPHFLSWVVVIGIMTIFLKTE-GLVNRLIEpLFGIEPIS 178
Cdd:COG4209    90 NTLLISLLKLVFGFPLPIILALLLNELRSKRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDtGLVNQLLR-ALGGEPIN 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 179 FLQQPGWFMPLIVLEVIWKEAGWGTIIFLAALAGVNPSLYEAAVVDGASRWRQIWHITLPALRSTIIILFILRLGTVLDS 258
Cdd:COG4209   169 FLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILNIGNILNV 248

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2279554533 259 GFEQIFLMLNPFTMEVGNVLDTFVYFKGIQQADFSFGTAVGLFKSVVGFILILSANWLAKKFGDEGVF 326
Cdd:COG4209   249 GFEQIYLLYNPLNYSTSDVIDTYVYRIGLQNGDYSYATAVGLFKSVVGLILVLIANKIAKKLGEESLF 316
 
Name Accession Description Interval E-value
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 20-326 5.14e-160

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 449.16  E-value: 5.14e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  20 TPNTLRQTKLRNRLWKERYLFLLLLPGLLYFIVYRYVPMLGNIIAFQDYSPFQGFLHSEWVGLQHFNKIFSDQEVIRVLW 99
Cdd:COG4209    10 RKKKKRKKSFLKRLKRDWQLYLMLLPGLIYLLIFSYLPMYGIVIAFKDYNPFKGIFGSPWVGLKNFKFLFSSPDFWRVLR 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 100 NTIFLSFLQIAFAFPVPIVLAVMLNELKNERYKRVVQSILYLPHFLSWVVVIGIMTIFLKTE-GLVNRLIEpLFGIEPIS 178
Cdd:COG4209    90 NTLLISLLKLVFGFPLPIILALLLNELRSKRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDtGLVNQLLR-ALGGEPIN 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 179 FLQQPGWFMPLIVLEVIWKEAGWGTIIFLAALAGVNPSLYEAAVVDGASRWRQIWHITLPALRSTIIILFILRLGTVLDS 258
Cdd:COG4209   169 FLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILNIGNILNV 248

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2279554533 259 GFEQIFLMLNPFTMEVGNVLDTFVYFKGIQQADFSFGTAVGLFKSVVGFILILSANWLAKKFGDEGVF 326
Cdd:COG4209   249 GFEQIYLLYNPLNYSTSDVIDTYVYRIGLQNGDYSYATAVGLFKSVVGLILVLIANKIAKKLGEESLF 316
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
64-252 3.99e-13

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 68.31  E-value: 3.99e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  64 AFQDYSPFQgfLHSEWVGLQHFNKIFSDQEVIRVLWNTIFLSFLQIAFAFPVPIVLAVMLNELKneRYKRVVQSILYLPH 143
Cdd:PRK10561   25 SLQSVDPFG--FSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVV--RGSRFYQTLMLLPY 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 144 FLSWVVVIGI-MTIFLKTEGLVNRLIEpLFGIEpISFLQQPGWFMPLIVLEVIWKEAGWGTIIFLAALAGVNPSLYEAAV 222
Cdd:PRK10561  101 AVAPAVAAVLwIFLFNPGRGLITHFLA-EFGYD-WNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAA 178

                         170       180       190
                  ....*....|....*....|....*....|
gi 2279554533 223 VDGASRWRQIWHITLPALRSTIIILFILRL 252
Cdd:PRK10561  179 IDGAGPIRRFFKLALPLIAPVSFFLLVVNL 208
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 98-311 6.13e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 60.76  E-value: 6.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  98 LWNTIFLSFLQIAFAFPVPIVLAVMLNELKNeRYKRVVQSILYLPHFLSWVVVIGIMTIFLKTEGLVNRLieplfgiepi 177
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGIL---------- 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 178 sflqqPGWFMPLIVLEVIWKeAGWGTIIFLAALAGVNPSLYEAAVVDGASRWRQIWHITLPALRSTIIILFILRLGTVLd 257
Cdd:cd06261    70 -----PGLGLPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARAL- 142

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2279554533 258 SGFEQIFLMLNPFTMEVGNvldtfvyfkGIQQADFSFGTAVGLFKSVVGFILIL 311
Cdd:cd06261   143 GEFALVSFLGGGEAPGPGT---------GLLLIFAILFPGDLGVAAAVALILLL 187
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 76-309 2.76e-10

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 61.23  E-value: 2.76e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  76 HSEWVGLQHFNKIFSDQEVIRVLWNTIFLSFLQIAFAFPVPIVLAVMLnELKNERYKRVVQSILYLPhFLSWVVVIGIMT 155
Cdd:TIGR03262  34 DGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYAL-TRSRIPGKGAFRLVALLP-LLAPSLLPAISL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 156 IFL-KTEGLVnrliEPLFGIEPISflqqpgWFMPLIVLEVIWKEAgWGTIIFLAALAGVNPSLYEAAVVDGASRWRQIWH 234
Cdd:TIGR03262 112 IYLfGNQGLL----KGLLGGFSIY------GFWGIVIGEVFYTFP-HALMILVTALSLADGRLYEAARAMGASPWRTFFT 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 235 ITLPALR----STIIILFILrlgTVLDSGFEQIflmlnpftmeVG---NVLDTFVYFKGIQQADFSFGTAVG---LFKSV 304
Cdd:TIGR03262 181 VTLPGAKygliSAAFVVFTL---VITDFGVPKV----------IGgdyNVLATDIYKQVIGQQNFPMGAVVGvllLLPAL 247


                  ....*
gi 2279554533 305 VGFIL 309
Cdd:TIGR03262 248 LAFGI 252
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 177-320 1.96e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 56.15  E-value: 1.96e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 177 ISFLQQPGWFMPLIVLEVIWKEAGWGTIIFLAALAGVNPSLYEAAVVDGASRWRQIWHITLPALRSTIIILFILRLGTVL 256
Cdd:pfam00528  42 IAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGAL 121

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2279554533 257 DSGFEQIFLMLNPftmEVGNVLdtfvyFKGIQQADFSFGTAVGLFKSVVGFILILSANWLAKKF 320
Cdd:pfam00528 122 GGAVLLEFLGSWP---GLGLLL-----IEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLL 177
 
Name Accession Description Interval E-value
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 20-326 5.14e-160

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 449.16  E-value: 5.14e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  20 TPNTLRQTKLRNRLWKERYLFLLLLPGLLYFIVYRYVPMLGNIIAFQDYSPFQGFLHSEWVGLQHFNKIFSDQEVIRVLW 99
Cdd:COG4209    10 RKKKKRKKSFLKRLKRDWQLYLMLLPGLIYLLIFSYLPMYGIVIAFKDYNPFKGIFGSPWVGLKNFKFLFSSPDFWRVLR 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 100 NTIFLSFLQIAFAFPVPIVLAVMLNELKNERYKRVVQSILYLPHFLSWVVVIGIMTIFLKTE-GLVNRLIEpLFGIEPIS 178
Cdd:COG4209    90 NTLLISLLKLVFGFPLPIILALLLNELRSKRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDtGLVNQLLR-ALGGEPIN 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 179 FLQQPGWFMPLIVLEVIWKEAGWGTIIFLAALAGVNPSLYEAAVVDGASRWRQIWHITLPALRSTIIILFILRLGTVLDS 258
Cdd:COG4209   169 FLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILNIGNILNV 248

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2279554533 259 GFEQIFLMLNPFTMEVGNVLDTFVYFKGIQQADFSFGTAVGLFKSVVGFILILSANWLAKKFGDEGVF 326
Cdd:COG4209   249 GFEQIYLLYNPLNYSTSDVIDTYVYRIGLQNGDYSYATAVGLFKSVVGLILVLIANKIAKKLGEESLF 316
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
49-319 6.84e-53

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 175.71  E-value: 6.84e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  49 YFIVYRYVPMLGNI-IAFQDYSPFQGflHSEWVGLQHFNKIFSDQEVIRVLWNTIFLSFLQIAFAFPVPIVLAVMLNelK 127
Cdd:COG1175    30 LLLVFVLYPLLYTLyLSFTDWNLLGP--PPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLN--R 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 128 NERYKRVVQSILYLPHFLSWVVVIGI-MTIFLKTEGLVNRLIEpLFGIEPISFLQQPGWFMPLIVLEVIWKEAGWGTIIF 206
Cdd:COG1175   106 KLRGRGFFRTLFFLPWVISPVVVALIwKWLFNPDYGLLNALLG-ALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIF 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 207 LAALAGVNPSLYEAAVVDGASRWRQIWHITLPALRSTIIILFILRLGTVLDSgFEQIFLMLNPFTMEVGNVLDTFVYFKG 286
Cdd:COG1175   185 LAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQV-FDLVYVLTGGGPGNSTTTLVLYIYQTA 263

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2279554533 287 IQQADFSFGTAVGLFKSVVGFILILSANWLAKK 319
Cdd:COG1175   264 FQQFDFGYASAIAVVLFLIILVLTLLQLRLLRR 296
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
74-319 8.75e-17

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 80.98  E-value: 8.75e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  74 FLHSEWVGLQHFNKIFSDQEVIRVLWNTIFLSFLQIAFAFPVPIVLAVMLnelknERY----KRVVQSILYLPHFL-SWV 148
Cdd:COG1178    32 LLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLL-----ARTdfpgRRLLRWLLLLPLALpPYV 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 149 VVIGIMTIFlKTEGLVNRLIEPLFGIEPISFLQQPG-------WFMPLIVLeviwkeagwgtiIFLAALAGVNPSLYEAA 221
Cdd:COG1178   107 VALAWIALF-GPNGLLNTLLRALFGLEPPDIYGLGGiilvlvlFNYPYVYL------------LLRAALRSIDASLEEAA 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 222 VVDGASRWRQIWHITLPALRSTIIILFILRLGTVLDS-GfeqIFLMLNPFTmevgNVLDTFVYFKGIQQADFSFGTAVGL 300
Cdd:COG1178   174 RSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADfG---TPLVLGGGY----TTLTTAIYQAWLGDFDLGAAAALAL 246

                         250
                  ....*....|....*....
gi 2279554533 301 FKSVVGFILILSANWLAKK 319
Cdd:COG1178   247 VLLLLVLLLLLLERRLRRR 265
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 62-319 2.97e-13

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 69.02  E-value: 2.97e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  62 IIAFQDYSPFQGFLHSewVGLQHFNKIFSDQEVIRVLWNTIFLSFLQ----IAFAFPVPIVLAVMlnelkNERYKRVVQS 137
Cdd:COG1176    35 VYSFTTRDPYGGVVPG--FTLENYARLFTDPLYLKVLLRTLWIALLTtlicLLLGYPIAYFLARA-----PPRWRNLLLL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 138 ILYLPHFLSWVVVIGIMTIFLKTEGLVNRLIEPLfGI--EPISFLQQPG-------W-FMPLIVLeviwkeagwgtiIFL 207
Cdd:COG1176   108 LVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLAL-GLidEPLRLLYTEFavviglvYvYLPFMVL------------PLY 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 208 AALAGVNPSLYEAAVVDGASRWRQIWHITLP----ALRSTIIILFILRLGTvldsgFEQIFLMLNPFTMEVGNVldtfVY 283
Cdd:COG1176   175 AALEKIDPSLLEAARDLGASPWQTFRRVILPlslpGIIAGSLLVFIPALGA-----FVTPALLGGGKVLMIGNL----IY 245

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2279554533 284 FKGIQQADFSFGTAVGLFKSVVGFILILSANWLAKK 319
Cdd:COG1176   246 QQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRR 281
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
64-252 3.99e-13

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 68.31  E-value: 3.99e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  64 AFQDYSPFQgfLHSEWVGLQHFNKIFSDQEVIRVLWNTIFLSFLQIAFAFPVPIVLAVMLNELKneRYKRVVQSILYLPH 143
Cdd:PRK10561   25 SLQSVDPFG--FSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVV--RGSRFYQTLMLLPY 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 144 FLSWVVVIGI-MTIFLKTEGLVNRLIEpLFGIEpISFLQQPGWFMPLIVLEVIWKEAGWGTIIFLAALAGVNPSLYEAAV 222
Cdd:PRK10561  101 AVAPAVAAVLwIFLFNPGRGLITHFLA-EFGYD-WNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAA 178

                         170       180       190
                  ....*....|....*....|....*....|
gi 2279554533 223 VDGASRWRQIWHITLPALRSTIIILFILRL 252
Cdd:PRK10561  179 IDGAGPIRRFFKLALPLIAPVSFFLLVVNL 208
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 50-250 5.28e-12

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 64.75  E-value: 5.28e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  50 FIVYRYVPMLGNII-AFQDySPFQGFLHSEWvGLQHFNKIFSDQEVIRVLWNTIFLSFLQIAFAFPVPIVLAVMLNELKN 128
Cdd:COG1177    16 VLLFLYLPILVLVLySFND-SWFLTFPPEGF-TLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRF 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 129 eRYKRVVQSILYLPHFLSWVVV-IGIMTIFlkteglvnrlieplfgiepiSFLQQPGWFMPLIVLEVIWkEAGWGTIIFL 207
Cdd:COG1177    94 -RGRRLLLALLLLPLVVPGIVLgVALLLLF--------------------SALGLSGGLWGLILAHVVF-TLPFVVLVVL 151

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2279554533 208 AALAGVNPSLYEAAVVDGASRWRQIWHITLPALRSTIIILFIL 250
Cdd:COG1177   152 ARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALL 194
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 98-311 6.13e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 60.76  E-value: 6.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  98 LWNTIFLSFLQIAFAFPVPIVLAVMLNELKNeRYKRVVQSILYLPHFLSWVVVIGIMTIFLKTEGLVNRLieplfgiepi 177
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGIL---------- 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 178 sflqqPGWFMPLIVLEVIWKeAGWGTIIFLAALAGVNPSLYEAAVVDGASRWRQIWHITLPALRSTIIILFILRLGTVLd 257
Cdd:cd06261    70 -----PGLGLPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARAL- 142

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2279554533 258 SGFEQIFLMLNPFTMEVGNvldtfvyfkGIQQADFSFGTAVGLFKSVVGFILIL 311
Cdd:cd06261   143 GEFALVSFLGGGEAPGPGT---------GLLLIFAILFPGDLGVAAAVALILLL 187
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 74-321 2.18e-10

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 60.15  E-value: 2.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  74 FLHSEWVGLQHFNKIFSDQEVIRVLWNTIFLSF----LQIAFAFPVPIVLAvmlnelkneRY----KRVVQSILYLPHFL 145
Cdd:COG0555    32 VLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALiaalINLVFGLPLAWVLV---------RYrfpgKRLVDALVDLPFAL 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 146 SwVVVIGIM-TIFLKTEGLVNRLIEPlFGIEPIsflqqpgwFMPL-IVLEVIWKEAGWGTIIFLAALAGVNPSLYEAAVV 223
Cdd:COG0555   103 P-TAVAGIAlLLLFGPNGWLGQLLAP-LGIKVA--------FTPLgIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAAT 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 224 DGASRWRQIWHITLPALRSTIIILFILRL-------GTVldsgfeqIFLMLN-PFTMEvgnVLDTFVYFKgIQQADFSFG 295
Cdd:COG0555   173 LGASRWQTFRRVILPLLLPALLTGFALAFaralgefGAV-------IFIAGNlPMKTE---ILPLLIYLK-LEEGDYAGA 241

                         250       260
                  ....*....|....*....|....*.
gi 2279554533 296 TAVGLFKSVVGFILILSANWLAKKFG 321
Cdd:COG0555   242 TAIALVLLLISFLLLLLINLLQRRSR 267
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 76-309 2.76e-10

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 61.23  E-value: 2.76e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  76 HSEWVGLQHFNKIFSDQEVIRVLWNTIFLSFLQIAFAFPVPIVLAVMLnELKNERYKRVVQSILYLPhFLSWVVVIGIMT 155
Cdd:TIGR03262  34 DGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYAL-TRSRIPGKGAFRLVALLP-LLAPSLLPAISL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 156 IFL-KTEGLVnrliEPLFGIEPISflqqpgWFMPLIVLEVIWKEAgWGTIIFLAALAGVNPSLYEAAVVDGASRWRQIWH 234
Cdd:TIGR03262 112 IYLfGNQGLL----KGLLGGFSIY------GFWGIVIGEVFYTFP-HALMILVTALSLADGRLYEAARAMGASPWRTFFT 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 235 ITLPALR----STIIILFILrlgTVLDSGFEQIflmlnpftmeVG---NVLDTFVYFKGIQQADFSFGTAVG---LFKSV 304
Cdd:TIGR03262 181 VTLPGAKygliSAAFVVFTL---VITDFGVPKV----------IGgdyNVLATDIYKQVIGQQNFPMGAVVGvllLLPAL 247


                  ....*
gi 2279554533 305 VGFIL 309
Cdd:TIGR03262 248 LAFGI 252
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 177-320 1.96e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 56.15  E-value: 1.96e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 177 ISFLQQPGWFMPLIVLEVIWKEAGWGTIIFLAALAGVNPSLYEAAVVDGASRWRQIWHITLPALRSTIIILFILRLGTVL 256
Cdd:pfam00528  42 IAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGAL 121

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2279554533 257 DSGFEQIFLMLNPftmEVGNVLdtfvyFKGIQQADFSFGTAVGLFKSVVGFILILSANWLAKKF 320
Cdd:pfam00528 122 GGAVLLEFLGSWP---GLGLLL-----IEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLL 177
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
68-250 5.55e-09

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 57.09  E-value: 5.55e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  68 YSPFQGFLHSEWvGLQHFNKIFSDQEVIRVLWNTIFLSFLQIAFAFPVPIVLAVMLNELKNeRYKRVVQSILYLPHFLSW 147
Cdd:COG1178   311 LWSLTKALDDNL-TLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRG-RLARLLDRLAMLPYAVPG 388

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 148 VVV-IGIMTIFLKTEGLVnrlieplfgiepisfLQQPGW---------FMPLIVLeviwkeagwgtiIFLAALAGVNPSL 217
Cdd:COG1178   389 IVLgLGLLLLFNRPLPLL---------------LYGTLAilvlayvvrFLPFALR------------SLEAALAQIDPSL 441

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2279554533 218 YEAAVVDGASRWRQIWHITLPALRSTIIILFIL 250
Cdd:COG1178   442 EEAARSLGASPLRTLRRVTLPLLRPGLLAAALL 474
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 49-253 1.97e-08

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 54.58  E-value: 1.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  49 YFIVYRYVPmlgniiAFQDYSPFQGFLHSEW-VGLQHFNKIFSdqeVIRVLWNTIFLSFLQIAFAFPVPIVLAVMLNELK 127
Cdd:TIGR02138  24 LFLLYEAIP------AFEKNGILNFLTGTVWdPGSGPVQEQYG---ALPLIVGTLITSLIALLIAVPVGIGIAIFLSEIA 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 128 NERYKRVVQSILYLPHFLSWVVV--IGIMTIFLKTEGLVNRLIEPLFGIEPisfLQQPGWFMPLIVLEVIWKEagwgTII 205
Cdd:TIGR02138  95 PKRVRSVLKPVVELLAGIPSVVYgfWGLFVLVPFLKPHFQPFLGSNLGLIP---LFGGPILTAGIVLAIMILP----TIA 167

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2279554533 206 FLA--ALAGVNPSLYEAAVVDGASRWRQIWHITLPALRSTIIILFILRLG 253
Cdd:TIGR02138 168 SISrdALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLG 217
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 49-253 1.12e-07

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 52.40  E-value: 1.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  49 YFIVYRYVPmlgniiAFQDYSPFQGFLHSEWvglqhfNKIFSDQE--VIRVLWNTIFLSFLQIAFAFPVPIVLAVMLNEL 126
Cdd:COG0573    40 LFLLIESLP------AFQEVGLLEFLTGTEW------NPVSSNGEfgILPLIVGTLLVSLIALLIAVPLGLGIAIFLSEY 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 127 KNERYKRVVQSILYLphfLSWV--VVIGIMTIFLkteglVNRLIEPLFGIEPISFlqqpGWFMPLIVLeviwkeagwG-- 202
Cdd:COG0573   108 APPRLRRILKPAIEL---LAGIpsVVYGFWGLFV-----LVPLLRDLFPWPPSGF----SLLTAGIVL---------Aim 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2279554533 203 ---TIIFLA--ALAGVNPSLYEAAVVDGASRWRQIWHITLPALRSTIIILFILRLG 253
Cdd:COG0573   167 ilpTITSLSrdALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLG 222
malF PRK10999
maltose ABC transporter permease MalF;
79-240 1.41e-07

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 52.65  E-value: 1.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  79 WVGLQHFNKIFSDQEV----IRV-LWNTIFlSFLQIAFAFPVPIVLAVML--NELKNERYKRVVQSILY-LPHFLSWVVV 150
Cdd:PRK10999  264 TIGWKNFTRVFTDEGIqkpfIAIfIWTVVF-SLLTVVLTVAVGMVLACLVqwEALKGKAVYRVLLILPYaVPSFISILIF 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 151 IGImtiFLKTEGLVNRLIEPLFGIepisflqQPGWF--------MPLIVleVIWKEAGWGTIIFLAALAGVNPSLYEAAV 222
Cdd:PRK10999  343 KGL---FNQSFGEINMMLSALFGI-------KPAWFsdptlaktMILIV--NTWLGYPYMMILCMGLLKAIPDDLYEASA 410

                         170
                  ....*....|....*...
gi 2279554533 223 VDGASRWRQIWHITLPAL 240
Cdd:PRK10999  411 MDGAGPFQNFFKITLPLL 428
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 82-250 1.78e-07

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 51.63  E-value: 1.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  82 LQHFNKIFSDQEVIRVLWNTIFLS----FLQIAFAFPVPIVLAVMlnelkNERYKRVVQSILYLPHFLSWVVVIGIMTIF 157
Cdd:COG0395    60 LENYRAAFTDGPFGRYLLNSLIVAvvstVLSLLLSSLAAYALARF-----RFRGRKLLFLLILATLMIPGQVLLIPLYLL 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 158 LKTEGLVNRLIeplfgiepisflqqpgwfmPLIVLEVIWKEAgWGTIIFLAALAGVNPSLYEAAVVDGASRWRQIWHITL 237
Cdd:COG0395   135 FRQLGLLNTYW-------------------GLILPYLAFGLP-FGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVL 194

                         170
                  ....*....|...
gi 2279554533 238 PALRSTIIILFIL 250
Cdd:COG0395   195 PLSKPALATVAIF 207
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 80-239 3.85e-07

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 50.77  E-value: 3.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  80 VGLQHFNKIFSDQEVIRVLWNTIFLSFLQIAFAFPVPIVLAVMLNELK---NERYKRVVQSILYLPHFLswvvvIGIMTI 156
Cdd:PRK15050   57 LGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPfpgASLVGRFIDTFVAFPSFL-----ITLAFT 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 157 FL-KTEGLVNRLIEPLFGIE--PISFLQQPG--------WFMPLIVLEViwkeagwgtiifLAALAGVNPSLYEAAVVDG 225
Cdd:PRK15050  132 FLyGSAGSVNIALQRLFGLEapPLDFLYSPGgvilaeitFYTPFVVRPL------------LAAFAQLDARQLEAAASLG 199

                         170
                  ....*....|....
gi 2279554533 226 ASRWRQIWHITLPA 239
Cdd:PRK15050  200 ASPWRVARRVILPE 213
modB PRK09421
molybdate ABC transporter permease subunit;
88-250 9.04e-05

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 42.99  E-value: 9.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  88 IFSDQEvirvlWNTIFLS----FLQIAFAFPVPIVLAVMLNElKNERYKRVVQSILYLPHFLSWVVVIGIMTIFLKTEGL 163
Cdd:PRK09421    2 ILSDPE-----WQAVLLSlkvsSVAVLFSLPFGILVAWLLAR-CRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGF 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 164 VNRLIEPLFGIePISFlqqpGWF----------MPLIVLEviwkeagwgtiIFLAaLAGVNPSLYEAAVVDGASRWRQIW 233
Cdd:PRK09421   76 IGQWLYEWFGI-SFAF----SWRgaalaaavmaFPLMVRA-----------IRLS-LEAVDRKLEQAARTLGASPWRVFF 138

                         170
                  ....*....|....*..
gi 2279554533 234 HITLPALRSTIIILFIL 250
Cdd:PRK09421  139 TITLPLTLPGIIAGTVL 155
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 216-250 4.29e-04

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 41.29  E-value: 4.29e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2279554533 216 SLYEAAVVDGASRWRQIWHITLPALRSTIIILFIL 250
Cdd:COG3833   172 ELDEAAKIDGASHFQIFFRIILPLAKPILAVVALL 206
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 80-253 2.37e-03

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 38.92  E-value: 2.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533  80 VGLQHFNKIFSDQEVIRVLWNTIFLSFLQIAFAFPVPIVLAVMLNELKnERYKRVVQSILYLPHFLSWVVV-IGIMTIFL 158
Cdd:TIGR01581   5 LGGSHILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVR-FPLKKLLDTLLDLPMVLPPLVAgLALLLLFG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 159 KTEGLVNRLIepLFGIEPIsflqqpgwFMPL-IVLEVIWKEAGWGTIIFLAALAGVNPSLYEAAVVDGASRWRQIWHITL 237
Cdd:TIGR01581  84 RNGLLGPYLE--AAGIQVI--------FSTLgVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITL 153

                         170       180
                  ....*....|....*....|
gi 2279554533 238 PALRSTI----IILFILRLG 253
Cdd:TIGR01581 154 PMARPGLlaglVLAWARALG 173
PRK15082 PRK15082
glutathione ABC transporter permease GsiD; Provisional
 219-316 4.94e-03

glutathione ABC transporter permease GsiD; Provisional


Pssm-ID: 185040 [Multi-domain]  Cd Length: 301  Bit Score: 38.17  E-value: 4.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2279554533 219 EAAVVDGASRWRQIWHITLPALRSTIIILFILRLGTVLDSGFEQIFLML--NPFTMEVGNVLDTfvyfkgiQQADFSFGT 296
Cdd:PRK15082  195 ESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLgaQPPTPEWGAMLNE-------ARADMVIAP 267

                          90       100
                  ....*....|....*....|
gi 2279554533 297 AVGLFKSVVGFILILSANWL 316
Cdd:PRK15082  268 HVALFPSLAIFLTVLAFNLL 287
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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