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Conserved domains on  [gi|2284622824|ref|WP_257367548|]
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Rib/alpha-like domain-containing protein, partial [Streptococcus sp. HMSC036H09]

Protein Classification

Rib domain-containing protein( domain architecture ID 10552643)

Rib domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rib pfam08428
Rib domain; The region featured in this family is found repeated in a number of bacterial ...
 1-61 5.00e-19

Rib domain; The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib and alpha. These are expressed by group B streptococci, and Rib is thought to confer protective immunity.


:

Pssm-ID: 462474 [Multi-domain]  Cd Length: 76  Bit Score: 73.41  E-value: 5.00e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2284622824  1 KNEPKAKDQTVNIGETPKAEDSIENLKDLPDGTKVEFETPIDTTTAGDKPGKVVVTYPDGS 61
Cdd:pfam08428  4 KYTPKGKDITVEVGETPDAEDGIKNKDDLPEGTKYTWKTPPDTTTPGDKTGTVVVTYPDGS 64
 
Name Accession Description Interval E-value
Rib pfam08428
Rib domain; The region featured in this family is found repeated in a number of bacterial ...
 1-61 5.00e-19

Rib domain; The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib and alpha. These are expressed by group B streptococci, and Rib is thought to confer protective immunity.


Pssm-ID: 462474 [Multi-domain]  Cd Length: 76  Bit Score: 73.41  E-value: 5.00e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2284622824  1 KNEPKAKDQTVNIGETPKAEDSIENLKDLPDGTKVEFETPIDTTTAGDKPGKVVVTYPDGS 61
Cdd:pfam08428  4 KYTPKGKDITVEVGETPDAEDGIKNKDDLPEGTKYTWKTPPDTTTPGDKTGTVVVTYPDGS 64
rib_alpha TIGR02331
Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 ...
 8-84 5.39e-14

Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 amino acids, present in up to 14 copies in a protein and highly identical, even at the DNA level, within each protein. Sequences with these repeats are found in the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis, and related proteins of Lactobacillus. The repeat lacks Cys residues. Most members of this protein family also have the cell wall anchor motif LPXTG shared by many staphyloccal and streptococcal surface antigens.


Pssm-ID: 131384 [Multi-domain]  Cd Length: 80  Bit Score: 60.66  E-value: 5.39e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2284622824  8 DQTVNIGETPKAEDSIENLKDLPDGTKVEFET--PIDTTTAGDKPGKVVVTYPDGSTDTVDVTVKVVDPSTDADKNEPK 84
Cdd:TIGR02331  1 GETVEVGGTPDASDSITNLVDLPDGTTYVWKTvnTPDTNTPGDKPAVVVVTYPDGTKDTVPVTVHVTPPRTDADKYDPA 79
 
Name Accession Description Interval E-value
Rib pfam08428
Rib domain; The region featured in this family is found repeated in a number of bacterial ...
 1-61 5.00e-19

Rib domain; The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib and alpha. These are expressed by group B streptococci, and Rib is thought to confer protective immunity.


Pssm-ID: 462474 [Multi-domain]  Cd Length: 76  Bit Score: 73.41  E-value: 5.00e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2284622824  1 KNEPKAKDQTVNIGETPKAEDSIENLKDLPDGTKVEFETPIDTTTAGDKPGKVVVTYPDGS 61
Cdd:pfam08428  4 KYTPKGKDITVEVGETPDAEDGIKNKDDLPEGTKYTWKTPPDTTTPGDKTGTVVVTYPDGS 64
rib_alpha TIGR02331
Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 ...
 8-84 5.39e-14

Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 amino acids, present in up to 14 copies in a protein and highly identical, even at the DNA level, within each protein. Sequences with these repeats are found in the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis, and related proteins of Lactobacillus. The repeat lacks Cys residues. Most members of this protein family also have the cell wall anchor motif LPXTG shared by many staphyloccal and streptococcal surface antigens.


Pssm-ID: 131384 [Multi-domain]  Cd Length: 80  Bit Score: 60.66  E-value: 5.39e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2284622824  8 DQTVNIGETPKAEDSIENLKDLPDGTKVEFET--PIDTTTAGDKPGKVVVTYPDGSTDTVDVTVKVVDPSTDADKNEPK 84
Cdd:TIGR02331  1 GETVEVGGTPDASDSITNLVDLPDGTTYVWKTvnTPDTNTPGDKPAVVVVTYPDGTKDTVPVTVHVTPPRTDADKYDPA 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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