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Conserved domains on  [gi|2285393719|ref|WP_257713884|]
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lipoate--protein ligase family protein [Nosocomiicoccus ampullae]

Protein Classification

biotin/lipoate A/B protein ligase family protein( domain architecture ID 10000572)

biotin/lipoate A/B protein ligase family protein is responsible for attaching biotin and lipoic acid to a specific lysine at the active site of biotin and lipoate-dependent enzymes, respectively

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
11-247 5.45e-49

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


:

Pssm-ID: 439865  Cd Length: 246  Bit Score: 161.56  E-value: 5.45e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719  11 SYTNHPFDSFAFDDVLQHLVSQDKIPRV-RSWVHDNFIILGLQDmrleNLQDGLNT--LRNKGYNYIVRNSGGLGVVLDS 87
Cdd:COG0095     5 SGSTDPAFNLALDEALLEEVAEGEDPPTlRLWRNPPTVVIGRFQ----NVLPEVNLeyVEEHGIPVVRRISGGGAVYHDP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719  88 GVLNISLILPKSEVP-TIDNGYEKMYDIIKKSFPELKIDAyEIVGSYcpgnfDLSVNGQKFAGISQRRIKEAVAVQIYLA 166
Cdd:COG0095    81 GNLNYSLILPEDDVPlSIEESYRKLLEPILEALRKLGVDA-EFSGRN-----DIVVDGRKISGNAQRRRKGAVLHHGTLL 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719 167 VEGSGGDRANVMKDFYDVSSKPPRLEMNRDVmISLSELMK-GLTVDDAENRILETIKKEFGELKTAEpFSGEALERFDKQ 245
Cdd:COG0095   155 VDGDLEKLAKVLRVPYEKLRDKGIKSVRSRV-TNLSELLGtDITREEVKEALLEAFAEVLGVLEPGE-LTDEELEAAEEL 232

                  ..
gi 2285393719 246 RE 247
Cdd:COG0095   233 AE 234
 
Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
11-247 5.45e-49

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


Pssm-ID: 439865  Cd Length: 246  Bit Score: 161.56  E-value: 5.45e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719  11 SYTNHPFDSFAFDDVLQHLVSQDKIPRV-RSWVHDNFIILGLQDmrleNLQDGLNT--LRNKGYNYIVRNSGGLGVVLDS 87
Cdd:COG0095     5 SGSTDPAFNLALDEALLEEVAEGEDPPTlRLWRNPPTVVIGRFQ----NVLPEVNLeyVEEHGIPVVRRISGGGAVYHDP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719  88 GVLNISLILPKSEVP-TIDNGYEKMYDIIKKSFPELKIDAyEIVGSYcpgnfDLSVNGQKFAGISQRRIKEAVAVQIYLA 166
Cdd:COG0095    81 GNLNYSLILPEDDVPlSIEESYRKLLEPILEALRKLGVDA-EFSGRN-----DIVVDGRKISGNAQRRRKGAVLHHGTLL 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719 167 VEGSGGDRANVMKDFYDVSSKPPRLEMNRDVmISLSELMK-GLTVDDAENRILETIKKEFGELKTAEpFSGEALERFDKQ 245
Cdd:COG0095   155 VDGDLEKLAKVLRVPYEKLRDKGIKSVRSRV-TNLSELLGtDITREEVKEALLEAFAEVLGVLEPGE-LTDEELEAAEEL 232

                  ..
gi 2285393719 246 RE 247
Cdd:COG0095   233 AE 234
LplA cd16443
lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide ...
16-221 1.40e-39

lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.


Pssm-ID: 319742  Cd Length: 209  Bit Score: 136.23  E-value: 1.40e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719  16 PFDSFAFDDVLQHLVSQDKIPRVRSWVHDNFIILGLQDMRLENLQDGLntLRNKGYNYIVRNSGGLGVVLDSGVLNISLI 95
Cdd:cd16443    11 PAENLALDEALLRSVAAPPTLRLYLWQNPPTVVIGRFQNPLEEVNLEY--AEEDGIPVVRRPSGGGAVFHDLGNLNYSLI 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719  96 LPKsEVPTIDNGYEKMYDIIKKSFPELKIDAYEIVgsycPGNFDLSVNGQKFAGISQRRIKEAVAVQIYLAVEGSGGDRA 175
Cdd:cd16443    89 LPK-EHPSIDESYRALSQPVIKALRKLGVEAEFGG----VGRNDLVVGGKKISGSAQRRTKGRILHHGTLLVDVDLEKLA 163
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2285393719 176 NVMKDFYDV-SSKPPRLEmnRDVMISLSELM-KGLTVDDAENRILETI 221
Cdd:cd16443   164 RVLNVPYEKlKSKGPKSV--RSRVTNLSELLgRDITVEEVKNALLEAF 209
BPL_LplA_LipB pfam03099
Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, ...
58-167 1.07e-09

Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organizm probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LPLA) catalyzes the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes. The unusual biosynthesis pathway of lipoic acid is mechanistically intertwined with attachment of the cofactor.


Pssm-ID: 427135  Cd Length: 132  Bit Score: 55.14  E-value: 1.07e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719  58 NLQDGLNTLRNKGYNYIVRNSGGLG---VVLDS--GVLNISLILPKsEVPTIDNGYEKMY--DIIKKSFPELKIDAYEIV 130
Cdd:pfam03099  12 LEELNSSELESGGVVVVRRQTGGRGrggNVWHSpkGCLTYSLLLSK-EHPNVDPSVLEFYvlELVLAVLEALGLYKPGIS 90
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2285393719 131 GSYCP--GNFDLSVNGQKFAGISQRRIKEAVAVQIYLAV 167
Cdd:pfam03099  91 GIPCFvkWPNDLYVNGRKLAGILQRSTRGGTLHHGVIGL 129
 
Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
11-247 5.45e-49

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


Pssm-ID: 439865  Cd Length: 246  Bit Score: 161.56  E-value: 5.45e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719  11 SYTNHPFDSFAFDDVLQHLVSQDKIPRV-RSWVHDNFIILGLQDmrleNLQDGLNT--LRNKGYNYIVRNSGGLGVVLDS 87
Cdd:COG0095     5 SGSTDPAFNLALDEALLEEVAEGEDPPTlRLWRNPPTVVIGRFQ----NVLPEVNLeyVEEHGIPVVRRISGGGAVYHDP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719  88 GVLNISLILPKSEVP-TIDNGYEKMYDIIKKSFPELKIDAyEIVGSYcpgnfDLSVNGQKFAGISQRRIKEAVAVQIYLA 166
Cdd:COG0095    81 GNLNYSLILPEDDVPlSIEESYRKLLEPILEALRKLGVDA-EFSGRN-----DIVVDGRKISGNAQRRRKGAVLHHGTLL 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719 167 VEGSGGDRANVMKDFYDVSSKPPRLEMNRDVmISLSELMK-GLTVDDAENRILETIKKEFGELKTAEpFSGEALERFDKQ 245
Cdd:COG0095   155 VDGDLEKLAKVLRVPYEKLRDKGIKSVRSRV-TNLSELLGtDITREEVKEALLEAFAEVLGVLEPGE-LTDEELEAAEEL 232

                  ..
gi 2285393719 246 RE 247
Cdd:COG0095   233 AE 234
LplA cd16443
lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide ...
16-221 1.40e-39

lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.


Pssm-ID: 319742  Cd Length: 209  Bit Score: 136.23  E-value: 1.40e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719  16 PFDSFAFDDVLQHLVSQDKIPRVRSWVHDNFIILGLQDMRLENLQDGLntLRNKGYNYIVRNSGGLGVVLDSGVLNISLI 95
Cdd:cd16443    11 PAENLALDEALLRSVAAPPTLRLYLWQNPPTVVIGRFQNPLEEVNLEY--AEEDGIPVVRRPSGGGAVFHDLGNLNYSLI 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719  96 LPKsEVPTIDNGYEKMYDIIKKSFPELKIDAYEIVgsycPGNFDLSVNGQKFAGISQRRIKEAVAVQIYLAVEGSGGDRA 175
Cdd:cd16443    89 LPK-EHPSIDESYRALSQPVIKALRKLGVEAEFGG----VGRNDLVVGGKKISGSAQRRTKGRILHHGTLLVDVDLEKLA 163
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2285393719 176 NVMKDFYDV-SSKPPRLEmnRDVMISLSELM-KGLTVDDAENRILETI 221
Cdd:cd16443   164 RVLNVPYEKlKSKGPKSV--RSRVTNLSELLgRDITVEEVKNALLEAF 209
BPL_LplA_LipB cd16435
biotin-lipoate ligase family; This family includes biotin protein ligase (BPL), ...
41-221 1.01e-18

biotin-lipoate ligase family; This family includes biotin protein ligase (BPL), lipoate-protein ligase A (LplA) and octanoyl-[acyl carrier protein]-protein acyltransferase (LipB). Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LplA) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes.


Pssm-ID: 319740  Cd Length: 198  Bit Score: 81.43  E-value: 1.01e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719  41 WVHDNFIILGLQDMRLENLQDglNTLRNKGYNYIVRNSGGLGVVLDSGVLNISLILPKSEVPTIDNGYEKMYDIIKKSFP 120
Cdd:cd16435    35 WEHPTTVTLGRLDRELPHLEL--AKKIERGYELVVRNRGGRAVSHDPGQLVFSPVIGPNVEFMISKFNLIIEEGIRDAIA 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719 121 ELKIDAYEIvgsycPGNFDLSVNGQKFAGISQRRIKEAVAVQIYLAVEGSGGDRANVMKDFYDVSSKpprlemnrdvmIS 200
Cdd:cd16435   113 DFGQSAEVK-----WGRNDLWIDNRKVCGIAVRVVKEAIFHGIALNLNQDLENFTEIIPCGYKPERV-----------TS 176
                         170       180
                  ....*....|....*....|..
gi 2285393719 201 LS-ELMKGLTVDDAENRILETI 221
Cdd:cd16435   177 LSlELGRKVTVEQVLERVLAAF 198
BPL_LplA_LipB pfam03099
Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, ...
58-167 1.07e-09

Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organizm probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LPLA) catalyzes the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes. The unusual biosynthesis pathway of lipoic acid is mechanistically intertwined with attachment of the cofactor.


Pssm-ID: 427135  Cd Length: 132  Bit Score: 55.14  E-value: 1.07e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2285393719  58 NLQDGLNTLRNKGYNYIVRNSGGLG---VVLDS--GVLNISLILPKsEVPTIDNGYEKMY--DIIKKSFPELKIDAYEIV 130
Cdd:pfam03099  12 LEELNSSELESGGVVVVRRQTGGRGrggNVWHSpkGCLTYSLLLSK-EHPNVDPSVLEFYvlELVLAVLEALGLYKPGIS 90
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2285393719 131 GSYCP--GNFDLSVNGQKFAGISQRRIKEAVAVQIYLAV 167
Cdd:pfam03099  91 GIPCFvkWPNDLYVNGRKLAGILQRSTRGGTLHHGVIGL 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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