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Conserved domains on  [gi|2309556158|ref|WP_261380957|]
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TIGR03747 family integrating conjugative element membrane protein, partial [Xanthomonas vasicola]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4400 super family cl14023
Domain of unknown function (DUF4400); This family of proteins is functionally uncharacterized. ...
 40-127 2.59e-50

Domain of unknown function (DUF4400); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 209 and 249 amino acids in length. There is a single completely conserved residue P that may be functionally important.


The actual alignment was detected with superfamily member TIGR03747:

Pssm-ID: 449324  Cd Length: 233  Bit Score: 159.37  E-value: 2.59e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309556158  40 TLPLIFTAAFVGLIDGLVRRDVRRFGAGRESGFIYHRAKASLMPLVVLPWVTYLALPISVHPLLILLPSAALLGWAVSLT 119
Cdd:TIGR03747 146 AIPLFLLAAFVGLVDGLVRRDLRRFGAGRESSFVYHHAKRFVKPLMILPWVLYLSLPISIYPNLILLPAALLLGLAVSIT 225


                  ....*...
gi 2309556158 120 AGSFKKYL 127
Cdd:TIGR03747 226 ASTFKKYL 233
 
Name Accession Description Interval E-value
conj_TIGR03747 TIGR03747
integrating conjugative element membrane protein, PFL_4697 family; Members of this protein ...
 40-127 2.59e-50

integrating conjugative element membrane protein, PFL_4697 family; Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 163459  Cd Length: 233  Bit Score: 159.37  E-value: 2.59e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309556158  40 TLPLIFTAAFVGLIDGLVRRDVRRFGAGRESGFIYHRAKASLMPLVVLPWVTYLALPISVHPLLILLPSAALLGWAVSLT 119
Cdd:TIGR03747 146 AIPLFLLAAFVGLVDGLVRRDLRRFGAGRESSFVYHHAKRFVKPLMILPWVLYLSLPISIYPNLILLPAALLLGLAVSIT 225


                  ....*...
gi 2309556158 120 AGSFKKYL 127
Cdd:TIGR03747 226 ASTFKKYL 233
DUF4400 pfam14348
Domain of unknown function (DUF4400); This family of proteins is functionally uncharacterized. ...
 39-124 1.01e-41

Domain of unknown function (DUF4400); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 209 and 249 amino acids in length. There is a single completely conserved residue P that may be functionally important.


Pssm-ID: 433890  Cd Length: 204  Bit Score: 136.74  E-value: 1.01e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309556158  39 ITLPLIFTAAFVGLIDGLVRRDVRRFGAGRESGFIYHRAKASLMPLVVLPWVTYLALPISVHPLLILLPSAALLGWAVSL 118
Cdd:pfam14348 119 LWLPLFLLLALVALVDGLVRRDLRRFGAGRESPFVYHHAKHLLIPLFVLPWVLYLALPFSVHPNLILLPAALLLGLAISV 198


                  ....*.
gi 2309556158 119 TAGSFK 124
Cdd:pfam14348 199 TASSFK 204
 
Name Accession Description Interval E-value
conj_TIGR03747 TIGR03747
integrating conjugative element membrane protein, PFL_4697 family; Members of this protein ...
 40-127 2.59e-50

integrating conjugative element membrane protein, PFL_4697 family; Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 163459  Cd Length: 233  Bit Score: 159.37  E-value: 2.59e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309556158  40 TLPLIFTAAFVGLIDGLVRRDVRRFGAGRESGFIYHRAKASLMPLVVLPWVTYLALPISVHPLLILLPSAALLGWAVSLT 119
Cdd:TIGR03747 146 AIPLFLLAAFVGLVDGLVRRDLRRFGAGRESSFVYHHAKRFVKPLMILPWVLYLSLPISIYPNLILLPAALLLGLAVSIT 225


                  ....*...
gi 2309556158 120 AGSFKKYL 127
Cdd:TIGR03747 226 ASTFKKYL 233
DUF4400 pfam14348
Domain of unknown function (DUF4400); This family of proteins is functionally uncharacterized. ...
 39-124 1.01e-41

Domain of unknown function (DUF4400); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 209 and 249 amino acids in length. There is a single completely conserved residue P that may be functionally important.


Pssm-ID: 433890  Cd Length: 204  Bit Score: 136.74  E-value: 1.01e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309556158  39 ITLPLIFTAAFVGLIDGLVRRDVRRFGAGRESGFIYHRAKASLMPLVVLPWVTYLALPISVHPLLILLPSAALLGWAVSL 118
Cdd:pfam14348 119 LWLPLFLLLALVALVDGLVRRDLRRFGAGRESPFVYHHAKHLLIPLFVLPWVLYLALPFSVHPNLILLPAALLLGLAISV 198


                  ....*.
gi 2309556158 119 TAGSFK 124
Cdd:pfam14348 199 TASSFK 204
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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