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Conserved domains on  [gi|2310407155|ref|WP_261582499|]
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MULTISPECIES: replication protein C, IncQ-type, partial [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RepC super family cl24185
Replication protein C (RepC); This family consists of several bacterial replication protein C ...
 37-90 9.71e-26

Replication protein C (RepC); This family consists of several bacterial replication protein C (RepC) sequences.


The actual alignment was detected with superfamily member pfam06504:

Pssm-ID: 399484  Cd Length: 273  Bit Score: 96.06  E-value: 9.71e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2310407155  37 SIDTLCGYVWPSEASGSTMRKRRQRVREALPELVALGWTVTEFAAGKYDITRPK 90
Cdd:pfam06504 220 EIDTLCGYVWPDAANDEAMKKRRQRARKALAELAAVGWKVSEYAEGKFEIGRPK 273
 
Name Accession Description Interval E-value
RepC pfam06504
Replication protein C (RepC); This family consists of several bacterial replication protein C ...
 37-90 9.71e-26

Replication protein C (RepC); This family consists of several bacterial replication protein C (RepC) sequences.


Pssm-ID: 399484  Cd Length: 273  Bit Score: 96.06  E-value: 9.71e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2310407155  37 SIDTLCGYVWPSEASGSTMRKRRQRVREALPELVALGWTVTEFAAGKYDITRPK 90
Cdd:pfam06504 220 EIDTLCGYVWPDAANDEAMKKRRQRARKALAELAAVGWKVSEYAEGKFEIGRPK 273
 
Name Accession Description Interval E-value
RepC pfam06504
Replication protein C (RepC); This family consists of several bacterial replication protein C ...
 37-90 9.71e-26

Replication protein C (RepC); This family consists of several bacterial replication protein C (RepC) sequences.


Pssm-ID: 399484  Cd Length: 273  Bit Score: 96.06  E-value: 9.71e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2310407155  37 SIDTLCGYVWPSEASGSTMRKRRQRVREALPELVALGWTVTEFAAGKYDITRPK 90
Cdd:pfam06504 220 EIDTLCGYVWPDAANDEAMKKRRQRARKALAELAAVGWKVSEYAEGKFEIGRPK 273
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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