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Conserved domains on  [gi|2316062770|ref|WP_263059267|]
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ABC transporter permease subunit [Pectobacterium sp. F1-1]

Protein Classification

ABC transporter permease subunit( domain architecture ID 11427315)

ABC transporter permease subunit, containing duplicated permease components, is the transmembrane (TM) subunit found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0043190|GO:0140359|GO:0042626|GO:0016020
PubMed:  1970642|18535149|25750732|24638992|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 27-301 1.04e-49

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 174.49  E-value: 1.04e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770  27 LFSRLLTLAGIVVLIGMLPWWSGQDPALALLrarsgEQEATTETLNAIRHSLGLDQGPLRLLLNWLMGLLHGDAGNSWVS 106
Cdd:COG0601     9 LLQAIPVLLGVSTLVFLLLRLLPGDPAAALL-----GPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFVY 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 107 GRPVLPGMLQAAGVSLTLMATSALVAFTLA---AMLCApTFRHGLRGqihRSGGLFAALFTALPEFLLASFLLIVGAVWL 183
Cdd:COG0601    84 GRPVSDLIAERLPVTLELALLALLLALLIGiplGILAA-LRRGSWLD---RLITVLALLGISIPSFWLGLLLILLFAVKL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 184 QWFPPYGW--------QGLHYVVLPSLALGIPAGGYLGRIISDAISATFSENWLTTWSVAGVSRRHIALA-VLKRTLPSV 254
Cdd:COG0601   160 GWLPVSGRvspwedflDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRhALRNALIPV 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2316062770 255 MPLVGLVLVSLTGGAIAVEKVFAIPGLGRATLGAAAAQDLPALQVGV 301
Cdd:COG0601   240 VTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIV 286
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 366-588 2.01e-40

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 148.34  E-value: 2.01e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 366 PRDPY-TSAFLRLQPPSLLLPFGADAMGRDLLARVAHGTLNTCLLALVVSLACLAIGLLVGLFP--------RLLTGPIE 436
Cdd:COG1173    40 PYDPTaQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAgyfggwvdAVLMRLVD 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 437 VTNALPPVIAGLLVAAVNGPTATGAAIAVIAVSWAPLAAHTAALVAEINARPYIRMLPILGVGPIRRSLFYILPALLGPL 516
Cdd:COG1173   120 VLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPL 199

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2316062770 517 FRHAMLKLPGIALALASLGFLGLGASPPTPEWGRVLAEGMPYIERAFWGVLAPAAALgvlsILAVSAANLSG 588
Cdd:COG1173   200 IVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNYLLTAPWLALFPGLAI----VLTVLAFNLLG 267
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 27-301 1.04e-49

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 174.49  E-value: 1.04e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770  27 LFSRLLTLAGIVVLIGMLPWWSGQDPALALLrarsgEQEATTETLNAIRHSLGLDQGPLRLLLNWLMGLLHGDAGNSWVS 106
Cdd:COG0601     9 LLQAIPVLLGVSTLVFLLLRLLPGDPAAALL-----GPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFVY 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 107 GRPVLPGMLQAAGVSLTLMATSALVAFTLA---AMLCApTFRHGLRGqihRSGGLFAALFTALPEFLLASFLLIVGAVWL 183
Cdd:COG0601    84 GRPVSDLIAERLPVTLELALLALLLALLIGiplGILAA-LRRGSWLD---RLITVLALLGISIPSFWLGLLLILLFAVKL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 184 QWFPPYGW--------QGLHYVVLPSLALGIPAGGYLGRIISDAISATFSENWLTTWSVAGVSRRHIALA-VLKRTLPSV 254
Cdd:COG0601   160 GWLPVSGRvspwedflDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRhALRNALIPV 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2316062770 255 MPLVGLVLVSLTGGAIAVEKVFAIPGLGRATLGAAAAQDLPALQVGV 301
Cdd:COG0601   240 VTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIV 286
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 366-588 2.01e-40

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 148.34  E-value: 2.01e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 366 PRDPY-TSAFLRLQPPSLLLPFGADAMGRDLLARVAHGTLNTCLLALVVSLACLAIGLLVGLFP--------RLLTGPIE 436
Cdd:COG1173    40 PYDPTaQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAgyfggwvdAVLMRLVD 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 437 VTNALPPVIAGLLVAAVNGPTATGAAIAVIAVSWAPLAAHTAALVAEINARPYIRMLPILGVGPIRRSLFYILPALLGPL 516
Cdd:COG1173   120 VLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPL 199

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2316062770 517 FRHAMLKLPGIALALASLGFLGLGASPPTPEWGRVLAEGMPYIERAFWGVLAPAAALgvlsILAVSAANLSG 588
Cdd:COG1173   200 IVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNYLLTAPWLALFPGLAI----VLTVLAFNLLG 267
nickel_nikC TIGR02790
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ...
 375-588 1.51e-25

nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131837 [Multi-domain]  Cd Length: 258  Bit Score: 105.93  E-value: 1.51e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 375 LRLQPPSLLLPFGADAMGRDLLARVAHGTLNTCLLALVVSLACLAIGLLVGLFPRLLTGPI--------EVTNALPPVIA 446
Cdd:TIGR02790  33 MRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLAGYIGGRVdeaimrvcDVFLSFPTIIL 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 447 GLLVAAVNGPTATGAAIAVIAVSWAPLAAHTAALVAEINARPYIRMLPILGVGPIRRSLFYILPALLGPLFRHAMLKLPG 526
Cdd:TIGR02790 113 SLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAARTSGASHWQIIRRHILPNILSPIIVLATLDIGH 192

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2316062770 527 IALALASLGFLGLGASPPTPEWGRVLAEGMPYIERAFWGVLAPaaalGVLSILAVSAANLSG 588
Cdd:TIGR02790 193 VILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYP----GLAILISVMAFNLLG 250
PRK10913 PRK10913
dipeptide ABC transporter permease DppC;
386-588 4.81e-24

dipeptide ABC transporter permease DppC;


Pssm-ID: 182833 [Multi-domain]  Cd Length: 300  Bit Score: 102.55  E-value: 4.81e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 386 FGADAMGRDLLARVAHGTLNTCLLALVVSLACLAIGLLVGLFPRLLTGPIE--------VTNALPPVIAGLLVAAVNGPT 457
Cdd:PRK10913   81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDniimrvvdIMLALPSLLLALVLVAIFGPS 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 458 ATGAAIAVIAVSWAPLAAHT-AALVAEINaRPYIRMLPILGVGPIRRSLFYILPALLGPLFRHAMLKLPGIALALASLGF 536
Cdd:PRK10913  161 IVNAALALTFVALPHYVRLTrAAVLVEVN-RDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGF 239

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2316062770 537 LGLGASPPTPEWGRVLAEGMPYIERAFWGVLAPaaalGVLSILAVSAANLSG 588
Cdd:PRK10913  240 LGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFP----GLAILLTVLAFNLMG 287
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 20-298 8.03e-20

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 90.53  E-value: 8.03e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770  20 RYGMLIPLFsrlltLAGIVVLIGMLPWWSGqDPALALLRArsGEQEATTETLNAIRHSLGLDQGPLRLLLNWLMGLLHGD 99
Cdd:PRK10352    8 RLLLLIPML-----LAASVIIFLMLRLGTG-DPALDYLRL--SNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 100 AGNSWVSGRPVLPGMLQAAGVSLTLMATSALVAFTLAAMLCAPTFRHGLRGQIHRSGGLfAALFTALPEFLLASFLLIVG 179
Cdd:PRK10352   80 FGISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFI-AFLGVSMPNFWLAFLLVMAF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 180 AVWLQWFPPYGWQGLHYVVLPSLALGIPAGGYLGRIISDAISATFSENWLTTWSVAGVSRRHIALA-VLKRTLPSVMPLV 258
Cdd:PRK10352  159 SVYLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRhILRNASLPMITAV 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 2316062770 259 GLVLVSLTGGAIAVEKVFAIPGLGRATLGAAAAQDLPALQ 298
Cdd:PRK10352  239 GMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQ 278
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 418-589 5.90e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.91  E-value: 5.90e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 418 LAIGLLVGLFP-----RLLTGPIEVTNALPPVIAGLLVAAVNGPTATG----AAIAVIAVSWAPLAAHTAALVAEINARP 488
Cdd:pfam00528   2 IPLGIIAALRRgrrldRLLRPLIDLLQALPSFVLAILLVVIAILSILGhgilPAIILALLGWAGYARLIRRAALRSLPSD 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 489 YIRMLPILGVGPIRRSLFYILPALLGPLFRHAMLKLPGIALALASLGFL----GLGASPPTPEWGRVLAEGMpyierafW 564
Cdd:pfam00528  82 LVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPEIQ-------G 154

                         170       180
                  ....*....|....*....|....*
gi 2316062770 565 GVLAPAAALGVLSILAVSAANLSGR 589
Cdd:pfam00528 155 PVLAAALILLLLNLLVDILQRLLDP 179
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 404-579 3.12e-04

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 41.88  E-value: 3.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 404 LNTCLLALVVSLACLAIGLLVGLFPRLLTGP--------IEVTNALPPVIAGLLVAAV--------NGPTATGAAIAVIA 467
Cdd:cd06261     2 LNTLLLALIATLLALVLGLLLGIILARKRGKldrllrriIDLLLSLPSLVLGLLLVLLfgvllgwgILPGLGLPALILAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 468 VSWAPLAAHTAALVAEINARPYIRMLPILGVGPIRRSLFYILPALLGPLFRHAMLKLPGIALALASLGFLGLGAsPPTPE 547
Cdd:cd06261    82 LLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGPG 160

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2316062770 548 WGRVLAEGmpYIERAFWGVLAPAAALGVLSIL 579
Cdd:cd06261   161 TGLLLIFA--ILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 159-301 4.78e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 41.52  E-value: 4.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 159 FAALFTALPEFLLASFLLIVGavwlqwfppyGWQGLHYVVLPSLALGIPAGGYLGRIISDAISATFSENWLTTWSVAGVS 238
Cdd:pfam00528  23 LIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGAS 92

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2316062770 239 RRHIALAV-LKRTLPSVMPLVGLVLVSLTGGAIAVEKVFAIPGLGRATLGAAAAQDLPALQVGV 301
Cdd:pfam00528  93 RWQIFRKIiLPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPV 156
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 27-301 1.04e-49

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 174.49  E-value: 1.04e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770  27 LFSRLLTLAGIVVLIGMLPWWSGQDPALALLrarsgEQEATTETLNAIRHSLGLDQGPLRLLLNWLMGLLHGDAGNSWVS 106
Cdd:COG0601     9 LLQAIPVLLGVSTLVFLLLRLLPGDPAAALL-----GPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFVY 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 107 GRPVLPGMLQAAGVSLTLMATSALVAFTLA---AMLCApTFRHGLRGqihRSGGLFAALFTALPEFLLASFLLIVGAVWL 183
Cdd:COG0601    84 GRPVSDLIAERLPVTLELALLALLLALLIGiplGILAA-LRRGSWLD---RLITVLALLGISIPSFWLGLLLILLFAVKL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 184 QWFPPYGW--------QGLHYVVLPSLALGIPAGGYLGRIISDAISATFSENWLTTWSVAGVSRRHIALA-VLKRTLPSV 254
Cdd:COG0601   160 GWLPVSGRvspwedflDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRhALRNALIPV 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2316062770 255 MPLVGLVLVSLTGGAIAVEKVFAIPGLGRATLGAAAAQDLPALQVGV 301
Cdd:COG0601   240 VTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIV 286
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 366-588 2.01e-40

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 148.34  E-value: 2.01e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 366 PRDPY-TSAFLRLQPPSLLLPFGADAMGRDLLARVAHGTLNTCLLALVVSLACLAIGLLVGLFP--------RLLTGPIE 436
Cdd:COG1173    40 PYDPTaQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAgyfggwvdAVLMRLVD 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 437 VTNALPPVIAGLLVAAVNGPTATGAAIAVIAVSWAPLAAHTAALVAEINARPYIRMLPILGVGPIRRSLFYILPALLGPL 516
Cdd:COG1173   120 VLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPL 199

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2316062770 517 FRHAMLKLPGIALALASLGFLGLGASPPTPEWGRVLAEGMPYIERAFWGVLAPAAALgvlsILAVSAANLSG 588
Cdd:COG1173   200 IVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNYLLTAPWLALFPGLAI----VLTVLAFNLLG 267
nickel_nikC TIGR02790
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ...
 375-588 1.51e-25

nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131837 [Multi-domain]  Cd Length: 258  Bit Score: 105.93  E-value: 1.51e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 375 LRLQPPSLLLPFGADAMGRDLLARVAHGTLNTCLLALVVSLACLAIGLLVGLFPRLLTGPI--------EVTNALPPVIA 446
Cdd:TIGR02790  33 MRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLAGYIGGRVdeaimrvcDVFLSFPTIIL 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 447 GLLVAAVNGPTATGAAIAVIAVSWAPLAAHTAALVAEINARPYIRMLPILGVGPIRRSLFYILPALLGPLFRHAMLKLPG 526
Cdd:TIGR02790 113 SLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAARTSGASHWQIIRRHILPNILSPIIVLATLDIGH 192

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2316062770 527 IALALASLGFLGLGASPPTPEWGRVLAEGMPYIERAFWGVLAPaaalGVLSILAVSAANLSG 588
Cdd:TIGR02790 193 VILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYP----GLAILISVMAFNLLG 250
PRK10913 PRK10913
dipeptide ABC transporter permease DppC;
386-588 4.81e-24

dipeptide ABC transporter permease DppC;


Pssm-ID: 182833 [Multi-domain]  Cd Length: 300  Bit Score: 102.55  E-value: 4.81e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 386 FGADAMGRDLLARVAHGTLNTCLLALVVSLACLAIGLLVGLFPRLLTGPIE--------VTNALPPVIAGLLVAAVNGPT 457
Cdd:PRK10913   81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDniimrvvdIMLALPSLLLALVLVAIFGPS 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 458 ATGAAIAVIAVSWAPLAAHT-AALVAEINaRPYIRMLPILGVGPIRRSLFYILPALLGPLFRHAMLKLPGIALALASLGF 536
Cdd:PRK10913  161 IVNAALALTFVALPHYVRLTrAAVLVEVN-RDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGF 239

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2316062770 537 LGLGASPPTPEWGRVLAEGMPYIERAFWGVLAPaaalGVLSILAVSAANLSG 588
Cdd:PRK10913  240 LGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFP----GLAILLTVLAFNLMG 287
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
376-573 4.95e-20

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 90.65  E-value: 4.95e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 376 RLQPPSLLLPFGADAMGRDLLARVAHGTLNTCLLALVVSLACLAIGLLVGLFPRLLTGPIE--------VTNALPPVIAG 447
Cdd:PRK09881   66 RLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADaiimrimdIMLSIPSLVLT 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 448 LLVAAVNGPTATGA--AIAVIAVSWAPLAAHTAALVaeINARPYIRMLPILGVGPIRRSLFYILPALLGPLFRHAMLKLP 525
Cdd:PRK09881  146 MALAAALGPSLFNAmlAIAIVRIPFYVRLARGQALV--VRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIG 223

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2316062770 526 GIALALASLGFLGLGASPPTPEWGRVLAEGMPYIERAFWGVLAPAAAL 573
Cdd:PRK09881  224 SAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAI 271
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 20-298 8.03e-20

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 90.53  E-value: 8.03e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770  20 RYGMLIPLFsrlltLAGIVVLIGMLPWWSGqDPALALLRArsGEQEATTETLNAIRHSLGLDQGPLRLLLNWLMGLLHGD 99
Cdd:PRK10352    8 RLLLLIPML-----LAASVIIFLMLRLGTG-DPALDYLRL--SNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 100 AGNSWVSGRPVLPGMLQAAGVSLTLMATSALVAFTLAAMLCAPTFRHGLRGQIHRSGGLfAALFTALPEFLLASFLLIVG 179
Cdd:PRK10352   80 FGISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFI-AFLGVSMPNFWLAFLLVMAF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 180 AVWLQWFPPYGWQGLHYVVLPSLALGIPAGGYLGRIISDAISATFSENWLTTWSVAGVSRRHIALA-VLKRTLPSVMPLV 258
Cdd:PRK10352  159 SVYLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRhILRNASLPMITAV 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 2316062770 259 GLVLVSLTGGAIAVEKVFAIPGLGRATLGAAAAQDLPALQ 298
Cdd:PRK10352  239 GMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQ 278
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 24-301 1.11e-18

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 87.08  E-value: 1.11e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770  24 LIPLFSRLLTLAGIVVL-IGMLPwwsgQDPAlallRARSGeQEATTETLNAIRHSLGLDQGPLRLLLNWLMGLLHGDAGN 102
Cdd:PRK15081    9 LLGLIPTLLIVAVLVFLfVHLLP----GDPA----RLAAG-PEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGT 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 103 SWVSGRPV--------LPGMLqaagvsLTLMATSALVAFTLAAMLCAPTFRHGLRgqiHRSGGLFAALFTALPEFLLASF 174
Cdd:PRK15081   80 SMVSRRPVseeiasrfMPTLW------LTITSMVWAVIFGMAIGIASAVWRNRWP---DRLGMTLAVSGISFPAFALGML 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 175 LLIVGAVWLQWFPPYGWQGLHYVVLPSLALGIPAGGYLGRIISDAISATFSENWLTTWSVAGVSRRhiaLAVLKRTLPSV 254
Cdd:PRK15081  151 LMQVFSVELGWLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSET---WVVLKHGLRNA 227

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2316062770 255 M-PLV---GLVLVSLTGGAIAVEKVFAIPGLGRATLGAAAAQDLPALQVGV 301
Cdd:PRK15081  228 MiPVVtmmGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEV 278
nikC PRK10417
nickel transporter permease NikC; Provisional
 366-590 2.86e-18

nickel transporter permease NikC; Provisional


Pssm-ID: 236687 [Multi-domain]  Cd Length: 272  Bit Score: 85.10  E-value: 2.86e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 366 PRDP-YTSAFLRLQPPSLLLPFGADAMGRDLLARVAHGTlNTCLLALVVSLAC-LAIGLLVGLFPRLLTGPI-------- 435
Cdd:PRK10417   28 PYDPqAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAGT-RVSLGSVMACLLLvLALGLVIGGSAGLLGGRVdqatmrva 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 436 EVTNALPPVIAGLLVAAVNGPTATGAAIAVIAVSWAPLAAHTAALVAEINARPYIRMLPILGVGPIRRSLFYILPALLGP 515
Cdd:PRK10417  107 DMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQ 186

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2316062770 516 LFRHAMLKLPGIALALASLGFLGLGASPPTPEWGRVLAEGMPYIERAFWGVLAPAAALgvlsILAVSAANLSGRH 590
Cdd:PRK10417  187 LLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGLAL----FISVMAFNLLGDA 257
PRK15406 PRK15406
oligopeptide ABC transporter permease OppC; Provisional
 386-575 7.34e-13

oligopeptide ABC transporter permease OppC; Provisional


Pssm-ID: 185304 [Multi-domain]  Cd Length: 302  Bit Score: 69.48  E-value: 7.34e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 386 FGADAMGRDLLARVAHGTLNTCLLALVVSLACLAIGLLVGLFPRLLTGPI--------EVTNALPPVIAGLLVAAVNGPT 457
Cdd:PRK15406   84 FGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVdsvmmrllEILNSFPFMFFVILLVTFFGQN 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 458 ATGAAIAVIAVSWAPLAAHTAALVAEINARPYIRMLPILGVGPIRRSLFYILPALLGPLFRHAMLKLPGIALALASLGFL 537
Cdd:PRK15406  164 ILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFL 243

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2316062770 538 GLGASPPTPEWGRVLAEGMPYIERAFWGVLAPAAALGV 575
Cdd:PRK15406  244 GLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVV 281
PRK15111 PRK15111
peptide ABC transporter permease SapC;
386-581 3.14e-12

peptide ABC transporter permease SapC;


Pssm-ID: 185066 [Multi-domain]  Cd Length: 296  Bit Score: 67.42  E-value: 3.14e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 386 FGADAMGRDLLARVAHGTLNTCLLALVVSLACLAIGLLVGLFPRLLTG--------PIEVTNALPPVIAGLLVAAVNGPT 457
Cdd:PRK15111   78 LGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATLCGLVLGVFAGATHGlrsavlnhILDTLLSIPSLLLAIIVVAFAGPS 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 458 ATGAAIAVIAVSWAPLAAHTAALVAEINARPYIRMLPILGVGPIRRSLFYILPALLGPLFRHAMLKLPGIALALASLGFL 537
Cdd:PRK15111  158 LSHAMFAVWLALLPRMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFL 237

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2316062770 538 GLGASPPTPEWGRVLAEGMPYIERAFWGVLAPAAALgVLSILAV 581
Cdd:PRK15111  238 DLGAQLPSPEWGAMLGDSLELIYVAPWTVMLPGAAI-MLSVLLV 280
oppB PRK09471
oligopeptide ABC transporter permease OppB;
159-293 9.88e-11

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 63.16  E-value: 9.88e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 159 FAALFTALPEFLLASFLLIVGAVWLQWFPPYGWQG--LHYVVLPSLALGIPAGGYLGRIISDAISATFSENWLTTWSVAG 236
Cdd:PRK09471  134 FAMTGVVIPSFVVAPLLVLIFAITLHWLPGGGWNGgaLKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKG 213

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2316062770 237 VSRRHIALA-VLKRTLPSVMPLVGLVLVSLTGGAIAVEKVFAIPGLGRATLGAAAAQD 293
Cdd:PRK09471  214 LPMRRIILRhALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRD 271
PRK15082 PRK15082
glutathione ABC transporter permease GsiD; Provisional
 380-588 1.66e-10

glutathione ABC transporter permease GsiD; Provisional


Pssm-ID: 185040 [Multi-domain]  Cd Length: 301  Bit Score: 62.44  E-value: 1.66e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 380 PSLLLPFGADAMGRDLLARVAHGTLntclLALVVSLACLAIGLLVGLFPRLLTGPIE------------VTNALPPVIAG 447
Cdd:PRK15082   76 PSLQHWFGVDSLGRDIFSRILVGAR----ISLAAGFFSVAIGAAIGTVLGLLAGYYEgwwdriimricdVLFAFPGILLA 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 448 LLVAAVNGPTATGAAIAVIAVSWAPLAAHTAALVAEINARPYIRMLPILGVGPIRRSLFYILPALLGPLFRHAMLKLPGI 527
Cdd:PRK15082  152 IAVVAILGSGMANVIIAVAIFSIPAFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTS 231

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2316062770 528 ALALASLGFLGLGASPPTPEWGRVLAEGmpyieRAFWgVLAPAAAL--GVLSILAVSAANLSG 588
Cdd:PRK15082  232 IITAASLSFLGLGAQPPTPEWGAMLNEA-----RADM-VIAPHVALfpSLAIFLTVLAFNLLG 288
YejE COG4239
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ...
 379-581 3.63e-10

ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443381 [Multi-domain]  Cd Length: 342  Bit Score: 61.71  E-value: 3.63e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 379 PPSLLLPFGADAMGRDLLARVAHGTLNTCLLALVVSLACLAIGLLVG------------LFPRLltgpIEVTNALPPVIA 446
Cdd:COG4239   116 PPSAENWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGavqgyfggrvdlLFQRF----IEIWSSMPELYL 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 447 GLLVAAVNGPTATGAAIAVIAVSWAPLAAHTAALVAEINARPYIRMLPILGVGPIRRSLFYILPALLGPLFRHAMLKLPG 526
Cdd:COG4239   192 LIILSSIFQPSFWLLLGILLLFGWMGLVGVVRAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMVATLTFLPFILSG 271

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2316062770 527 IALALASLGFLGLGASPPTPEWGRVLAEGMPYIErAFWGVLAPAAALGVLSILAV 581
Cdd:COG4239   272 AITTLTSLDFLGFGLPPGSPSLGELLAQGKNNLQ-APWLGLSAFVVLALMLSLLV 325
PRK15021 PRK15021
microcin C ABC transporter permease; Provisional
 379-579 3.23e-08

microcin C ABC transporter permease; Provisional


Pssm-ID: 184982 [Multi-domain]  Cd Length: 341  Bit Score: 55.76  E-value: 3.23e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 379 PPSLLLPFGADAMGRDLLARVAHGTLNTCLLALVVSLACLAIGLLVGLFPRLLTGP--------IEVTNALPPVIAGLLV 450
Cdd:PRK15021  116 PPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKvdlwgqrfIEVWSGMPTLFLIILL 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 451 AAVNGPTATGAAIAVIAVSWAPLAAHTAALVAEINARPYIRMLPILGVGPIRRSLFYILPALLGPLFRHAMLKLPGIALA 530
Cdd:PRK15021  196 SSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITT 275

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2316062770 531 LASLGFLGLGASPPTPEWGRVLAEGMPYIERAFWGVLAPAAALGVLSIL 579
Cdd:PRK15021  276 LTSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGITAFLSVAILLSLL 324
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
171-301 1.38e-07

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 53.66  E-value: 1.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 171 LASFLLIVGAVWLQwfPPYGWQGLHYVVLPSLALGIPAGGYLGRIISDAISATFSENWLTTWSVAGVSR-RHIALAVLKR 249
Cdd:PRK10914  181 LTGFMLIDTAIWGE--DGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRmRVIIVHALRN 258

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2316062770 250 TLPSVMPLVGLVLVSLTGGAIAVEKVFAIPGLGRATLGAAAAQDLPALQVGV 301
Cdd:PRK10914  259 AMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGV 310
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 418-589 5.90e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.91  E-value: 5.90e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 418 LAIGLLVGLFP-----RLLTGPIEVTNALPPVIAGLLVAAVNGPTATG----AAIAVIAVSWAPLAAHTAALVAEINARP 488
Cdd:pfam00528   2 IPLGIIAALRRgrrldRLLRPLIDLLQALPSFVLAILLVVIAILSILGhgilPAIILALLGWAGYARLIRRAALRSLPSD 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 489 YIRMLPILGVGPIRRSLFYILPALLGPLFRHAMLKLPGIALALASLGFL----GLGASPPTPEWGRVLAEGMpyierafW 564
Cdd:pfam00528  82 LVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPEIQ-------G 154

                         170       180
                  ....*....|....*....|....*
gi 2316062770 565 GVLAPAAALGVLSILAVSAANLSGR 589
Cdd:pfam00528 155 PVLAAALILLLLNLLVDILQRLLDP 179
PRK15110 PRK15110
peptide ABC transporter permease SapB;
194-301 2.05e-04

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 43.91  E-value: 2.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 194 LHYVVLPSLALGIPAGGYLGRIISDAISATFSENWLTTWSVAGVSRRHIALA-VLKRTLPSVMPLVGLVLVSLTGGAIAV 272
Cdd:PRK15110  180 IRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRhVLHNALPPVIPRLGLQFSTMLTLAMIT 259

                          90       100
                  ....*....|....*....|....*....
gi 2316062770 273 EKVFAIPGLGRATLGAAAAQDLPALQVGV 301
Cdd:PRK15110  260 EMVFSWPGLGRWLINAIRQQDYAAISAGV 288
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 404-579 3.12e-04

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 41.88  E-value: 3.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 404 LNTCLLALVVSLACLAIGLLVGLFPRLLTGP--------IEVTNALPPVIAGLLVAAV--------NGPTATGAAIAVIA 467
Cdd:cd06261     2 LNTLLLALIATLLALVLGLLLGIILARKRGKldrllrriIDLLLSLPSLVLGLLLVLLfgvllgwgILPGLGLPALILAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 468 VSWAPLAAHTAALVAEINARPYIRMLPILGVGPIRRSLFYILPALLGPLFRHAMLKLPGIALALASLGFLGLGAsPPTPE 547
Cdd:cd06261    82 LLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGPG 160

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2316062770 548 WGRVLAEGmpYIERAFWGVLAPAAALGVLSIL 579
Cdd:cd06261   161 TGLLLIFA--ILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 159-301 4.78e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 41.52  E-value: 4.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316062770 159 FAALFTALPEFLLASFLLIVGavwlqwfppyGWQGLHYVVLPSLALGIPAGGYLGRIISDAISATFSENWLTTWSVAGVS 238
Cdd:pfam00528  23 LIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGAS 92

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2316062770 239 RRHIALAV-LKRTLPSVMPLVGLVLVSLTGGAIAVEKVFAIPGLGRATLGAAAAQDLPALQVGV 301
Cdd:pfam00528  93 RWQIFRKIiLPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPV 156
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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