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Conserved domains on  [gi|2324330345|ref|WP_264479237|]
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ferric aerobactin receptor IutA [Cedecea sp. FDAARGOS_727]

Protein Classification

TonB-dependent receptor( domain architecture ID 11493161)

TonB dependent receptor having a carboxypeptidase regulatory-like domain, may act as a channel to allow import of extracellular nutrients, such as iron-siderophore complexes or non-Fe compounds

Gene Ontology:  GO:0015891|GO:0055085
PubMed:  14665678|12409204

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
TonB-siderophor TIGR01783
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ...
 46-733 1.39e-162

TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


:

Pssm-ID: 273805 [Multi-domain]  Cd Length: 651  Bit Score: 484.22  E-value: 1.39e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  46 EMAQTTWVIEKTELEQQIQGgkELKDALAQLIPGLDVSSQSRTNYG-MNVRGRPLVVLIDGVRLNSSRTDSR-QLDSIDP 123
Cdd:TIGR01783   1 DIPQSVSVITRQELEDQQAG--SLSEALQRVPGVVVGGSGGTTQFGnITIRGFGLEVDIDNVYLDGVPLLSRgNLAIVDP 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 124 FNIEHIEVISGATS-LYGGGSTGGLINIVTKKGQ--PETQMEFEAGTKSGFNSSKDHDERIasaisGGNEHISGRMSVAY 200
Cdd:TIGR01783  79 AMVERVEVLRGPASlLYGGSAPGGVINIVTKRPQdePKGSVTFGAGTRSGYRTAFDLGGPL-----GADGTFRGRLNGAR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 201 QKFGGWYDGNGDATLLDNTQTGLQYSDRLdvmgtgtlnidetqQLQLITQYYKSQGDDDYGlnlgkNFSAISGSSSpyvs 280
Cdd:TIGR01783 154 QDGDSFYDGAGEETRLGATATDWQLDDRT--------------LLRLGAYYQKERDRGGYG-----GLPASGGTSG---- 210

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 281 KGLNSDRIPGTE--RHLISMQYSNSDFLGQELVGQVYYRDESLMFYPFPTVDANKKATAFSSsqqDTDQYGAKLTLNSKP 358
Cdd:TIGR01783 211 RDLSSDRYLGTSsnRNYDDREYLSYGLSLEYQFNDVWTGKQNLRYSYFDTDSNQVQASGYSS---DGGLFGRSLTVVNVK 287

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 359 LDGWQLTYGLDADHERFTSNQMFFDLAqasaSGGLNNQKIFTTGRYPGYDISNLAAFLQSSYDINEIFTLSGGVRYQYTE 438
Cdd:TIGR01783 288 QDRVQIDAGLDGEFETGPIEHDLLLGV----SYGQRTTNRFNNTGYPSDNIYSLTATSSARTDIGDSPKDRALSSTTKAL 363

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 439 NkvddfiGFAQQQQIASGKVKSADAIPGGSTDYDNflfNAGLLMHITERQQAWVNFSQGVELPDPGKYYGRGTYGAAVNG 518
Cdd:TIGR01783 364 N------GVALQRILLADKWTLTLGGRYDSVDVKS---NNGVAGSTGKRDDSQFTPSLGVAYKPTDDWSLYASYAESFKP 434

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 519 HLPLTNSVNVSASKLQGVKVDSYELGWRYTGDNLRTQIAAYYSLSDKSVLAN--KDLTISVVDDKRRIYGVE-GAVDYFI 595
Cdd:TIGR01783 435 GGYYPKGAGNSGDILEPEKGKNYELGVRYDLGDSLLATAALFRITKDNQLVQdpVNGTFSVNAGKTRNRGVElEARGYLT 514

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 596 PDTNWSTGANFNVLKTESKVNGSWQKYDVKVASPSKATAYIGWAPDPWSLR------VQSTTSFNVSDAAGYSIDGYTTV 669
Cdd:TIGR01783 515 PGLSLSAGYTYTDAEFTEDTNGDTQGNTVPFVPKHTASLWASYAPPVGDNGltlgggVQYTGKAYVDGGNTGKVPSYTVV 594

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2324330345 670 DLLGSYQLPVGK---LSLSVENLFDRDYTTVWGQRAPlyyspgygpaSLYDYKGRGRTFGMNYSVQF 733
Cdd:TIGR01783 595 DLSVRYDLTKKKnltLALNVNNLFDRDYYTSGYRWGP----------SAYIYPGAPRTVGLSVSYDF 651
 
Name Accession Description Interval E-value
TonB-siderophor TIGR01783
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ...
 46-733 1.39e-162

TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


Pssm-ID: 273805 [Multi-domain]  Cd Length: 651  Bit Score: 484.22  E-value: 1.39e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  46 EMAQTTWVIEKTELEQQIQGgkELKDALAQLIPGLDVSSQSRTNYG-MNVRGRPLVVLIDGVRLNSSRTDSR-QLDSIDP 123
Cdd:TIGR01783   1 DIPQSVSVITRQELEDQQAG--SLSEALQRVPGVVVGGSGGTTQFGnITIRGFGLEVDIDNVYLDGVPLLSRgNLAIVDP 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 124 FNIEHIEVISGATS-LYGGGSTGGLINIVTKKGQ--PETQMEFEAGTKSGFNSSKDHDERIasaisGGNEHISGRMSVAY 200
Cdd:TIGR01783  79 AMVERVEVLRGPASlLYGGSAPGGVINIVTKRPQdePKGSVTFGAGTRSGYRTAFDLGGPL-----GADGTFRGRLNGAR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 201 QKFGGWYDGNGDATLLDNTQTGLQYSDRLdvmgtgtlnidetqQLQLITQYYKSQGDDDYGlnlgkNFSAISGSSSpyvs 280
Cdd:TIGR01783 154 QDGDSFYDGAGEETRLGATATDWQLDDRT--------------LLRLGAYYQKERDRGGYG-----GLPASGGTSG---- 210

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 281 KGLNSDRIPGTE--RHLISMQYSNSDFLGQELVGQVYYRDESLMFYPFPTVDANKKATAFSSsqqDTDQYGAKLTLNSKP 358
Cdd:TIGR01783 211 RDLSSDRYLGTSsnRNYDDREYLSYGLSLEYQFNDVWTGKQNLRYSYFDTDSNQVQASGYSS---DGGLFGRSLTVVNVK 287

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 359 LDGWQLTYGLDADHERFTSNQMFFDLAqasaSGGLNNQKIFTTGRYPGYDISNLAAFLQSSYDINEIFTLSGGVRYQYTE 438
Cdd:TIGR01783 288 QDRVQIDAGLDGEFETGPIEHDLLLGV----SYGQRTTNRFNNTGYPSDNIYSLTATSSARTDIGDSPKDRALSSTTKAL 363

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 439 NkvddfiGFAQQQQIASGKVKSADAIPGGSTDYDNflfNAGLLMHITERQQAWVNFSQGVELPDPGKYYGRGTYGAAVNG 518
Cdd:TIGR01783 364 N------GVALQRILLADKWTLTLGGRYDSVDVKS---NNGVAGSTGKRDDSQFTPSLGVAYKPTDDWSLYASYAESFKP 434

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 519 HLPLTNSVNVSASKLQGVKVDSYELGWRYTGDNLRTQIAAYYSLSDKSVLAN--KDLTISVVDDKRRIYGVE-GAVDYFI 595
Cdd:TIGR01783 435 GGYYPKGAGNSGDILEPEKGKNYELGVRYDLGDSLLATAALFRITKDNQLVQdpVNGTFSVNAGKTRNRGVElEARGYLT 514

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 596 PDTNWSTGANFNVLKTESKVNGSWQKYDVKVASPSKATAYIGWAPDPWSLR------VQSTTSFNVSDAAGYSIDGYTTV 669
Cdd:TIGR01783 515 PGLSLSAGYTYTDAEFTEDTNGDTQGNTVPFVPKHTASLWASYAPPVGDNGltlgggVQYTGKAYVDGGNTGKVPSYTVV 594

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2324330345 670 DLLGSYQLPVGK---LSLSVENLFDRDYTTVWGQRAPlyyspgygpaSLYDYKGRGRTFGMNYSVQF 733
Cdd:TIGR01783 595 DLSVRYDLTKKKnltLALNVNNLFDRDYYTSGYRWGP----------SAYIYPGAPRTVGLSVSYDF 651
ligand_gated_channel cd01347
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ...
 50-733 6.98e-93

TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.


Pssm-ID: 238657 [Multi-domain]  Cd Length: 635  Bit Score: 302.45  E-value: 6.98e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  50 TTWVIEKTELEQQiqGGKELKDALAQlIPGLDVSSQSRTNY-GMNVRGRPL---VVLIDGVRLNSSRT-DSRQLDSIDPF 124
Cdd:cd01347     1 SVSVITAEDIEKQ--PATSLADLLRR-IPGVSVTRGGGGGGsTISIRGFGPdrtLVLVDGLPLASSNYgRGVDLNTIPPE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 125 NIEHIEVISGATS-LYGGGSTGGLINIVTKKGQPETQMEFEAGTKS---GFNSSKDHDERIASAisgGNEHISGRMSVAY 200
Cdd:cd01347    78 LIERVEVLKGPSSaLYGSGAIGGVVNIITKRPTDEFGGSVTAGYGSdnsGSSGGGGFDVSGALA---DDGAFGARLYGAY 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 201 QKfggwydgnGDATLLDNTQTGLQYSDRLDVMGTGTLNIDETQQLQLITQYYKSQGDDDYGLNLGKNFSAISGSSSPYVS 280
Cdd:cd01347   155 RD--------GDGTIDGDGQADDSDEERYNVAGKLDWRPDDDTRLTLDAGYQDQDADGPGGTLPANGTGSSLGGGPSSNT 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 281 KGLNSDRIPGTERHLISMQYSNS-DFLGQELVGQVYYRDESLMFYPFPTVDAN-----KKATAFSSSQQDTDQYGAKLTL 354
Cdd:cd01347   227 NGDRDWDYRDRYRKRASLGLEHDlNDTGWTLRANLSYSYTDNDGDPLILNGGNnaaggDLGRSGYSSERDTTQLGFDAGL 306

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 355 NSKPLDG---WQLTYGLDADHERFtsnqmffdlaqasasgglnnqkifttgrypgyDISNLAAFLQSSYDINEIFTLSGG 431
Cdd:cd01347   307 NAPFGTGpvaHTLTLGVEYRREEL--------------------------------DEKQTALYAQDTIELTDDLTLTLG 354

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 432 VRYQYTENKVDDFIGfaqqqqiasgkvksadAIPGGSTDYDNFLFNAGLLMHITERQQAWVNFSQGVELPDPGKYYGRGT 511
Cdd:cd01347   355 LRYDHYDQDSKDTIA----------------GGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGGGS 418

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 512 ygaavnghlpLTNSVNVSASKLQGVKVDSYELGWRYTGDNLRTQIAAYYSLSDKSVLANKD-------LTISVVDDKRRI 584
Cdd:cd01347   419 ----------HGGTAAVGNPNLKPEKSKQYELGLKYDPGDGLTLSAALFRIDIKNEIVSTPtntglglVTVYVNGGKARI 488

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 585 YGVEGAVDYFIPDtNWSTGANFNVLKTESK-VNGSWQKYDVKVASPSKATAYIGWAPDPwsLRVQSTTSFNVSDAAGY-- 661
Cdd:cd01347   489 RGVELEASYDLTD-GLGLTGSYTYTDTEVKrTDGATTGNRLPGIPKHTANLGLDYELPD--EGLTAGGGVRYRGKQYAdt 565

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 662 -------SIDGYTTVDLLGSYQLPVG-KLSLSVENLFDRDYTTVWGQRaplyyspgygPASLYDYKGRGRTFGMNYSVQF 733
Cdd:cd01347   566 angnntvKVPGYTLVDLSASYQFTKNlTLRLGVNNLFDKDYYTSLSVR----------GSGLYGYYGPGRTYYLSVSYKF 635
CirA COG1629
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
31-707 3.08e-83

Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];


Pssm-ID: 441236 [Multi-domain]  Cd Length: 644  Bit Score: 277.09  E-value: 3.08e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  31 ETMVVSANRSNRTVAEMAQTTWVIEKTELEQQiqGGKELKDALaQLIPGLDVSSQSRTNYGMNVRG-----RPLVVLIDG 105
Cdd:COG1629     2 EEVVVTATRTDESLQDVPGSVSVISREQLEDQ--PATDLGDLL-RRVPGVSVTSAGGGAGQISIRGfggggNRVLVLVDG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 106 VRLNSSRTDSRQLDSIDPFNIEHIEVISGATS-LYGGGSTGGLINIVTKKGQPETQMEFEAGTKSgFNSSkdhdeRIASA 184
Cdd:COG1629    79 VPLNDPSGGDGGLSYIDPEDIERVEVLRGPSSaLYGSGALGGVINIVTKKPKDGKGGEVSASYGS-YGTY-----RASLS 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 185 ISGGNEHISGRMSVAYQKFGGWYDGNGdatlldntqtglqySDRLDVMGTGTLNIDETQQLQLITQYYKSQGDDDYGLNL 264
Cdd:COG1629   153 LSGGNGKLAYRLSASYRDSDGYRDNSD--------------SDRYNLRAKLGYQLGDDTRLTLSASYSDSDQDSPGYLTL 218

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 265 gknfSAISGSSSPYVSKGLNSDRIPGTERHLISMQYSNSDFL-GQELVGQVYYR----DESLMFYPFPTVDANkkataFS 339
Cdd:COG1629   219 ----AALRPRGAMDDGTNPYSNDTDDNTRDRYSLSLEYEHLGdGLKLSASAYYRyddtDLDSDFTPTPADGGT-----LE 289

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 340 SSQQDTDQYGAKLTLNSKPLDG--WQLTYGLDADHERFTSNQMFFDLaqasasgGLNNQKIFTTGRYPGYDISNLAAFLQ 417
Cdd:COG1629   290 QTDFDNRTYGLELRLTYDLGFGgkHTLLVGLDYQRQDLDGSGYPLDL-------GSGSLPTLTSGADDDGTTTSLALYAQ 362

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 418 SSYDINEIFTLSGGVRYQYTENKVDDFIgfaqqqqiasgkvkSADAIPGGSTDYDNFLFNAGLLMHITERQQAWVNFSQG 497
Cdd:COG1629   363 DTYKLTDKLTLTAGLRYDYVSYDVDDTV--------------TGTDSASGSRSYSAFSPSLGLTYQLSPNLSLYASYSRG 428

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 498 VELPDPGKYYGRGtygaavnghlplTNSVNVSASKLQGVKVDSYELGWRYT--GDNLRTQIAAYYS------LSDKSVLA 569
Cdd:COG1629   429 FRAPTFGELYANG------------TDPYSVGNPDLKPETSTNYELGLRYRllDGRLSLSLALFYSdvdneiLSVPLPND 496

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 570 NKDLTISVVDDKRRIYGVEGAVDYFiPDTNWSTGANFNVLKTESKVNGSWQK----YDVKVASPSKATAYIGW-APDPWS 644
Cdd:COG1629   497 SGFSTYYTNAGKARSYGVELELSYQ-LTPGLSLNASYSYTDAKFDDDTDGSAdldgNRLPGVPPLTANLGLTYeFPGGWS 575

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2324330345 645 --LRVQSTTSFNVSDAAGYSID-GYTTVDLLGSYQLPVG-KLSLSVENLFDRDYTTVWGQRAPLYYS 707
Cdd:COG1629   576 lgLGVRYVGDRYLDDANTQGAPgGYTLVDLGAGYRFGDNlTLSLGVDNLFDKKYATSLSVRASNVRG 642
TonB_dep_Rec pfam00593
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
 238-732 1.61e-31

TonB dependent receptor; This model now only covers the conserved part of the barrel structure.


Pssm-ID: 395474 [Multi-domain]  Cd Length: 475  Bit Score: 128.73  E-value: 1.61e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 238 NIDETQQLQLITQYYKSQGDDDYGLNLGKNFSAISGSSSPYVSKGLNSDRIPGTERHL-ISMQYSNSDFLGQELVGQVYY 316
Cdd:pfam00593   8 LLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLgYDYDLGDGLSWLSTLRLGLRY 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 317 RDESLMFYPFPTVDANKKATAFSSSQQDTDQYGAKLTLNSKplDGWQLTYGLDADHERFTSNQmffdlaQASASGGLNNQ 396
Cdd:pfam00593  88 SSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLD--LSHDLLLGVELRTAGLDYRR------LDDDAYDPYDP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 397 KIFTTGRYPGYDISNLAAFLQSSYDINEIFTLSGGVRYQYTENKVDDFIGFAQQqqiasgkvksadaipgGSTDYDNFLF 476
Cdd:pfam00593 160 ANPSSSSYSDTTTDSYGLYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGDN----------------FSRSYSAFSP 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 477 NAGLLMHITERQQAWVNFSQGVELPDPGKYYGRGTYGAavnghlplTNSVNVSASKLQGVKVDSYELGWRYTGDNLRTQI 556
Cdd:pfam00593 224 RLGLVYKPTDNLSLYASYSRGFRAPSLGELYGSGSGGG--------GGAVAGGNPDLKPETSDNYELGLKYDDGRLSLSL 295

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 557 AAYYS-LSDKSVLANKDLTISVVD------DKRRIYGVEGAVDYFIPDTNWStGANFNVLKTESKVNGSWQKYDVKVASP 629
Cdd:pfam00593 296 ALFYIdIKNLITSDPDGPGLGGTVytytnvGKARIRGVELELSGRLWGLGLS-GGGYTYTDADDDADADDTGNPLPNVPR 374

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 630 SKATAYIGWAP--DPWSLR-----VQSTTSFNVSDAAGYSIDGYTTVDLLGSYQLPVG-KLSLSVENLFDRDYTTVWgqr 701
Cdd:pfam00593 375 HTANLGLTYDFplGGWGARlgaryVGSGERRYGDAANTFKTPGYTLVDLSAGYRLNKNlTLRLGVNNLFDKYYKRYY--- 451

                         490       500       510
                  ....*....|....*....|....*....|.
gi 2324330345 702 aplyyspGYGPASLYDYKGRGRTFGMNYSVQ 732
Cdd:pfam00593 452 -------SSGGGNLGGYPGPGRTFYLGLSYK 475
PRK10064 PRK10064
catecholate siderophore receptor CirA; Provisional
 17-154 2.12e-13

catecholate siderophore receptor CirA; Provisional


Pssm-ID: 236646 [Multi-domain]  Cd Length: 663  Bit Score: 73.77  E-value: 2.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  17 LAMMAPAVAQQNSDETMVVSANRSNRTVAEMAQTTWVIEKTELeqQIQGGKELKDALAQlIPGLDVSSQSRTNYGMNVRG 96
Cdd:PRK10064   17 ISCAWPVLAVDDDGETMVVTASAVEQNLKDAPASISVITQEDL--QRKPVQNLKDVLKE-VPGVQLTNEGDNRKGVSIRG 93

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2324330345  97 RP---LVVLIDGVRLNSS----RTDSRQLDSIDPFNIEHIEVISGA-TSLYGGGSTGGLINIVTKK 154
Cdd:PRK10064   94 LDssyTLILIDGKRVNSRnavfRHNDFDLNWIPVDAIERIEVVRGPmSSLYGSDALGGVVNIITKK 159
 
Name Accession Description Interval E-value
TonB-siderophor TIGR01783
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ...
 46-733 1.39e-162

TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


Pssm-ID: 273805 [Multi-domain]  Cd Length: 651  Bit Score: 484.22  E-value: 1.39e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  46 EMAQTTWVIEKTELEQQIQGgkELKDALAQLIPGLDVSSQSRTNYG-MNVRGRPLVVLIDGVRLNSSRTDSR-QLDSIDP 123
Cdd:TIGR01783   1 DIPQSVSVITRQELEDQQAG--SLSEALQRVPGVVVGGSGGTTQFGnITIRGFGLEVDIDNVYLDGVPLLSRgNLAIVDP 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 124 FNIEHIEVISGATS-LYGGGSTGGLINIVTKKGQ--PETQMEFEAGTKSGFNSSKDHDERIasaisGGNEHISGRMSVAY 200
Cdd:TIGR01783  79 AMVERVEVLRGPASlLYGGSAPGGVINIVTKRPQdePKGSVTFGAGTRSGYRTAFDLGGPL-----GADGTFRGRLNGAR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 201 QKFGGWYDGNGDATLLDNTQTGLQYSDRLdvmgtgtlnidetqQLQLITQYYKSQGDDDYGlnlgkNFSAISGSSSpyvs 280
Cdd:TIGR01783 154 QDGDSFYDGAGEETRLGATATDWQLDDRT--------------LLRLGAYYQKERDRGGYG-----GLPASGGTSG---- 210

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 281 KGLNSDRIPGTE--RHLISMQYSNSDFLGQELVGQVYYRDESLMFYPFPTVDANKKATAFSSsqqDTDQYGAKLTLNSKP 358
Cdd:TIGR01783 211 RDLSSDRYLGTSsnRNYDDREYLSYGLSLEYQFNDVWTGKQNLRYSYFDTDSNQVQASGYSS---DGGLFGRSLTVVNVK 287

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 359 LDGWQLTYGLDADHERFTSNQMFFDLAqasaSGGLNNQKIFTTGRYPGYDISNLAAFLQSSYDINEIFTLSGGVRYQYTE 438
Cdd:TIGR01783 288 QDRVQIDAGLDGEFETGPIEHDLLLGV----SYGQRTTNRFNNTGYPSDNIYSLTATSSARTDIGDSPKDRALSSTTKAL 363

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 439 NkvddfiGFAQQQQIASGKVKSADAIPGGSTDYDNflfNAGLLMHITERQQAWVNFSQGVELPDPGKYYGRGTYGAAVNG 518
Cdd:TIGR01783 364 N------GVALQRILLADKWTLTLGGRYDSVDVKS---NNGVAGSTGKRDDSQFTPSLGVAYKPTDDWSLYASYAESFKP 434

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 519 HLPLTNSVNVSASKLQGVKVDSYELGWRYTGDNLRTQIAAYYSLSDKSVLAN--KDLTISVVDDKRRIYGVE-GAVDYFI 595
Cdd:TIGR01783 435 GGYYPKGAGNSGDILEPEKGKNYELGVRYDLGDSLLATAALFRITKDNQLVQdpVNGTFSVNAGKTRNRGVElEARGYLT 514

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 596 PDTNWSTGANFNVLKTESKVNGSWQKYDVKVASPSKATAYIGWAPDPWSLR------VQSTTSFNVSDAAGYSIDGYTTV 669
Cdd:TIGR01783 515 PGLSLSAGYTYTDAEFTEDTNGDTQGNTVPFVPKHTASLWASYAPPVGDNGltlgggVQYTGKAYVDGGNTGKVPSYTVV 594

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2324330345 670 DLLGSYQLPVGK---LSLSVENLFDRDYTTVWGQRAPlyyspgygpaSLYDYKGRGRTFGMNYSVQF 733
Cdd:TIGR01783 595 DLSVRYDLTKKKnltLALNVNNLFDRDYYTSGYRWGP----------SAYIYPGAPRTVGLSVSYDF 651
ligand_gated_channel cd01347
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ...
 50-733 6.98e-93

TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.


Pssm-ID: 238657 [Multi-domain]  Cd Length: 635  Bit Score: 302.45  E-value: 6.98e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  50 TTWVIEKTELEQQiqGGKELKDALAQlIPGLDVSSQSRTNY-GMNVRGRPL---VVLIDGVRLNSSRT-DSRQLDSIDPF 124
Cdd:cd01347     1 SVSVITAEDIEKQ--PATSLADLLRR-IPGVSVTRGGGGGGsTISIRGFGPdrtLVLVDGLPLASSNYgRGVDLNTIPPE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 125 NIEHIEVISGATS-LYGGGSTGGLINIVTKKGQPETQMEFEAGTKS---GFNSSKDHDERIASAisgGNEHISGRMSVAY 200
Cdd:cd01347    78 LIERVEVLKGPSSaLYGSGAIGGVVNIITKRPTDEFGGSVTAGYGSdnsGSSGGGGFDVSGALA---DDGAFGARLYGAY 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 201 QKfggwydgnGDATLLDNTQTGLQYSDRLDVMGTGTLNIDETQQLQLITQYYKSQGDDDYGLNLGKNFSAISGSSSPYVS 280
Cdd:cd01347   155 RD--------GDGTIDGDGQADDSDEERYNVAGKLDWRPDDDTRLTLDAGYQDQDADGPGGTLPANGTGSSLGGGPSSNT 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 281 KGLNSDRIPGTERHLISMQYSNS-DFLGQELVGQVYYRDESLMFYPFPTVDAN-----KKATAFSSSQQDTDQYGAKLTL 354
Cdd:cd01347   227 NGDRDWDYRDRYRKRASLGLEHDlNDTGWTLRANLSYSYTDNDGDPLILNGGNnaaggDLGRSGYSSERDTTQLGFDAGL 306

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 355 NSKPLDG---WQLTYGLDADHERFtsnqmffdlaqasasgglnnqkifttgrypgyDISNLAAFLQSSYDINEIFTLSGG 431
Cdd:cd01347   307 NAPFGTGpvaHTLTLGVEYRREEL--------------------------------DEKQTALYAQDTIELTDDLTLTLG 354

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 432 VRYQYTENKVDDFIGfaqqqqiasgkvksadAIPGGSTDYDNFLFNAGLLMHITERQQAWVNFSQGVELPDPGKYYGRGT 511
Cdd:cd01347   355 LRYDHYDQDSKDTIA----------------GGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGGGS 418

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 512 ygaavnghlpLTNSVNVSASKLQGVKVDSYELGWRYTGDNLRTQIAAYYSLSDKSVLANKD-------LTISVVDDKRRI 584
Cdd:cd01347   419 ----------HGGTAAVGNPNLKPEKSKQYELGLKYDPGDGLTLSAALFRIDIKNEIVSTPtntglglVTVYVNGGKARI 488

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 585 YGVEGAVDYFIPDtNWSTGANFNVLKTESK-VNGSWQKYDVKVASPSKATAYIGWAPDPwsLRVQSTTSFNVSDAAGY-- 661
Cdd:cd01347   489 RGVELEASYDLTD-GLGLTGSYTYTDTEVKrTDGATTGNRLPGIPKHTANLGLDYELPD--EGLTAGGGVRYRGKQYAdt 565

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 662 -------SIDGYTTVDLLGSYQLPVG-KLSLSVENLFDRDYTTVWGQRaplyyspgygPASLYDYKGRGRTFGMNYSVQF 733
Cdd:cd01347   566 angnntvKVPGYTLVDLSASYQFTKNlTLRLGVNNLFDKDYYTSLSVR----------GSGLYGYYGPGRTYYLSVSYKF 635
CirA COG1629
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
31-707 3.08e-83

Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];


Pssm-ID: 441236 [Multi-domain]  Cd Length: 644  Bit Score: 277.09  E-value: 3.08e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  31 ETMVVSANRSNRTVAEMAQTTWVIEKTELEQQiqGGKELKDALaQLIPGLDVSSQSRTNYGMNVRG-----RPLVVLIDG 105
Cdd:COG1629     2 EEVVVTATRTDESLQDVPGSVSVISREQLEDQ--PATDLGDLL-RRVPGVSVTSAGGGAGQISIRGfggggNRVLVLVDG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 106 VRLNSSRTDSRQLDSIDPFNIEHIEVISGATS-LYGGGSTGGLINIVTKKGQPETQMEFEAGTKSgFNSSkdhdeRIASA 184
Cdd:COG1629    79 VPLNDPSGGDGGLSYIDPEDIERVEVLRGPSSaLYGSGALGGVINIVTKKPKDGKGGEVSASYGS-YGTY-----RASLS 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 185 ISGGNEHISGRMSVAYQKFGGWYDGNGdatlldntqtglqySDRLDVMGTGTLNIDETQQLQLITQYYKSQGDDDYGLNL 264
Cdd:COG1629   153 LSGGNGKLAYRLSASYRDSDGYRDNSD--------------SDRYNLRAKLGYQLGDDTRLTLSASYSDSDQDSPGYLTL 218

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 265 gknfSAISGSSSPYVSKGLNSDRIPGTERHLISMQYSNSDFL-GQELVGQVYYR----DESLMFYPFPTVDANkkataFS 339
Cdd:COG1629   219 ----AALRPRGAMDDGTNPYSNDTDDNTRDRYSLSLEYEHLGdGLKLSASAYYRyddtDLDSDFTPTPADGGT-----LE 289

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 340 SSQQDTDQYGAKLTLNSKPLDG--WQLTYGLDADHERFTSNQMFFDLaqasasgGLNNQKIFTTGRYPGYDISNLAAFLQ 417
Cdd:COG1629   290 QTDFDNRTYGLELRLTYDLGFGgkHTLLVGLDYQRQDLDGSGYPLDL-------GSGSLPTLTSGADDDGTTTSLALYAQ 362

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 418 SSYDINEIFTLSGGVRYQYTENKVDDFIgfaqqqqiasgkvkSADAIPGGSTDYDNFLFNAGLLMHITERQQAWVNFSQG 497
Cdd:COG1629   363 DTYKLTDKLTLTAGLRYDYVSYDVDDTV--------------TGTDSASGSRSYSAFSPSLGLTYQLSPNLSLYASYSRG 428

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 498 VELPDPGKYYGRGtygaavnghlplTNSVNVSASKLQGVKVDSYELGWRYT--GDNLRTQIAAYYS------LSDKSVLA 569
Cdd:COG1629   429 FRAPTFGELYANG------------TDPYSVGNPDLKPETSTNYELGLRYRllDGRLSLSLALFYSdvdneiLSVPLPND 496

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 570 NKDLTISVVDDKRRIYGVEGAVDYFiPDTNWSTGANFNVLKTESKVNGSWQK----YDVKVASPSKATAYIGW-APDPWS 644
Cdd:COG1629   497 SGFSTYYTNAGKARSYGVELELSYQ-LTPGLSLNASYSYTDAKFDDDTDGSAdldgNRLPGVPPLTANLGLTYeFPGGWS 575

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2324330345 645 --LRVQSTTSFNVSDAAGYSID-GYTTVDLLGSYQLPVG-KLSLSVENLFDRDYTTVWGQRAPLYYS 707
Cdd:COG1629   576 lgLGVRYVGDRYLDDANTQGAPgGYTLVDLGAGYRFGDNlTLSLGVDNLFDKKYATSLSVRASNVRG 642
FepA COG4771
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ...
 15-677 7.00e-57

Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];


Pssm-ID: 443803 [Multi-domain]  Cd Length: 612  Bit Score: 204.71  E-value: 7.00e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  15 LLLAMMAPAVAQQNSD----ETMVVSANRSNRTVAEMAQTTWVIEKTELEQQiqGGKELKDALaQLIPGLDVSSQS--RT 88
Cdd:COG4771     8 LLLALAAQAADALAEDatelEEVVVTATRTEQSLSDAPASVSVITAEEIEKL--GATDLADAL-RLLPGVSVTRSGgrGG 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  89 NYGMNVRG---RPLVVLIDGVRLNSSRTDSR-QLDSIDPFNIEHIEVISGATS-LYGGGSTGGLINIVTKKGQPETQMEF 163
Cdd:COG4771    85 SSGISIRGlggDRVLVLIDGVPVNNPALGGGgDLSYIPPDDIERIEVIRGPASaLYGSDAIGGVINIITKKPTDELEGSV 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 164 EAgtksGFNSSKDHDERIASAISGGNEHISGRMSVAYQKFGGWYDGNGDATLLDNTQtglqysDRLDVMGTGTLNIDETQ 243
Cdd:COG4771   165 SL----GYGSNGNGTYSGSLSLGGPGDKLSFLLSGSYRDRDGYLDYRNGGFVGNSGY------ERYNLNAKLGYRLSDNH 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 244 QLQLITQYYKSQGDDDYglnlgknfsaiSGSSSPYVSKGLNSDRIPGTERHLISMQYSNSdfLGQELVGQVYYRDESlmf 323
Cdd:COG4771   235 RLSLSGGYSRQDRDGGP-----------PTLGDTEISSDNAGDRDTTTDRGNYSLRYNGD--LGDNLDLSLYYSRTD--- 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 324 ypFPTVDANKKATAFSSSQQDTDQYGAKLTLNSKPLDGWQLTYGLDADHERFTSNqmffdlaqasasgglnnqkifTTGR 403
Cdd:COG4771   299 --RDSTNGSLGGSTGSFSDSDDTTYGLELDLTYPLGGNHTLTLGAEYRYDDLDSS---------------------SFLG 355

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 404 YPGYDISNLAAFLQSSYDINEIFTLSGGVRYQYTENkvddfigfaqqqqiasgkvksadaipGGSTDYDNFLFNAGLLMH 483
Cdd:COG4771   356 GADASRDTYGLFAQDEWKLTDKLTLTAGLRYDYYST--------------------------FGASNYTAFSPRLGLRYD 409

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 484 ITERQQAWVNFSQGVELPDPGKYYGRGTYGaavnghlplTNSVNVSASKLQGVKVDSYELGWRY--TGDNLRTQIAAYYS 561
Cdd:COG4771   410 LSDNLTLRASYGRGFRAPSLAELYGSGTGT---------PGRYVLGNPDLKPETSDNYELGLEYrlGNGGLSLSLTGFYT 480

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 562 -LSDKSVLANKDLTISVVD-----DKRRIYGVEGAVDYFIPDtNWSTGANFNVLKTESKVNGSWQKYDvkVASPSKATAY 635
Cdd:COG4771   481 dIKDLIVLVPVGPGPGDVLqyenvGKARTYGLELELKYRLGK-GLTLTASYTYLDSKIDDGDTGEPLP--NVPPHKANLG 557

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*...
gi 2324330345 636 IGWAPDPWSL------RVQSTTSFNVSDAAGYSIDGYTTVDLLGSYQL 677
Cdd:COG4771   558 LDYRLPKWWLlllltrYYGGRYVTPPSGRLEGYTPGYTLLDLRASYKL 605
FecA COG4772
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
10-733 1.57e-46

Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];


Pssm-ID: 443804 [Multi-domain]  Cd Length: 681  Bit Score: 176.27  E-value: 1.57e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  10 WALNPLLLAMMAPAVAQQNSDETMVVSANRSNRT-VAEMAQTTWVIEKTELEQQiqGGKELKDALAQlIPGLDVssQSRT 88
Cdd:COG4772     3 RALAAALLLAAAAAAEAATTLETVVVTGSRAAEArLKDVPGSVSVVDREELENQ--AATSLREVLRR-VPGVNV--QEED 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  89 NYGM----NVRG------RPLVVLIDGVRLNSSRTDSRQLD-SIDPFNIEHIEVISGATSL-YGGGSTGGLINIVTKKG- 155
Cdd:COG4772    78 GFGLrpniGIRGlgprrsRGITLLEDGIPIAPAPYGDPAAYyFPDLERMERIEVLRGAAALrYGPQTVGGAINFVTRTIp 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 156 -QPETQMEFEAGtksGFNSSKDHderiaSAISGGNEHISGRMSVAYQKFGGWYDGNGdatlldntqtglqySDRLDVMGT 234
Cdd:COG4772   158 tAFGGELRVTGG---SFGYRRTH-----ASVGGTVGNFGYLVEYSRKRGDGFRDNSG--------------FDINDFNAK 215

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 235 GTLNIDETQQLQLITQYYKSQGDDDYGLNLgKNFSAisgssSPYVSKGLNsDRIpGTERHLISMQYSNSDFLGQELVGQV 314
Cdd:COG4772   216 LGYRLSDRQELTLKFQYYDEDANTPGGLTD-AQFDA-----DPRQSYRPA-DQF-DTRRTQLSLRYEHQLSDNTTLTTTA 287

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 315 YYRDESLMFY-PFPTVDANKKATAFSSSQQDTDQYGAKLTLNSK-PLDGW--QLTYGLDADHERFTSNQMFFDLAQASAS 390
Cdd:COG4772   288 YYNDFSRNWYiRQNTADPNTPGLGLRGNPRGYRSYGIEPRLTHRfELGGVphTLEVGLRYHREEEDRKQYVNTYGQGRSG 367

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 391 GGLNNQKIFTTgrypgydiSNLAAFLQSSYDINEIFTLSGGVRYQYTENKVDDFIGFAqqqqiasgkvksADAIPGGSTD 470
Cdd:COG4772   368 AGLRRDRRFSA--------DALAAYAQNRFELTGRLTLTPGLRYEHIRRDRTDRYSTR------------TGGDDSGSNS 427

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 471 YDNFLFNAGLLMHITERQQAWVNFSQGVELPdpgkyygrgTYGAAvnghlpltNSVNVSASKLQGVKVDSYELGWRYTGD 550
Cdd:COG4772   428 YSEFLPGLGLLYQLTDNLQLYANVSRGFEPP---------TFGDL--------AYGNGGNPDLKPEKSWNYELGTRGRIG 490

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 551 N-LRTQIAAYYSLSDksvlaNKDLTISVVDDKR---------RIYGVEGAVDY-FIPDT--NWSTGANFNVLKTE--SKV 615
Cdd:COG4772   491 NgLSAEVALFYIDYD-----NELGSCSAAGGDRstftnagetRHQGLELALDYdLLKGGglGLPLFAAYTYTDAEftSDF 565

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 616 NGSWQKYDVKVASPSKATAYIGWAPDPWSLRVQST------TSF--NVSDAAGYSIDGYTTVDLLGSYQLPVG-KLSLSV 686
Cdd:COG4772   566 GPVFAGNRLPYVPRHQLTAGLGYEHGGWTANLNGRyvseqfTDAanTVADGSFGKIPSYTVLDLSASYDFGKNlSLFAGV 645

                         730       740       750       760
                  ....*....|....*....|....*....|....*....|....*..
gi 2324330345 687 ENLFDRDYttvWGQRAPLyYSPGYGPaslydykGRGRTFGMNYSVQF 733
Cdd:COG4772   646 NNLFDKRY---IASRAPN-YAAGIRP-------GPPRTVYAGLRLKF 681
Fiu COG4774
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
39-733 2.01e-42

Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];


Pssm-ID: 443806 [Multi-domain]  Cd Length: 639  Bit Score: 163.51  E-value: 2.01e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  39 RSNRTVAEMAQTTWVIEKTELEQQiqGGKELKDALaQLIPGLDVSSQSRTNYG-MNVRGRPLV--VLIDGVRLNSSRTds 115
Cdd:COG4774     1 KTDTPLLDTPQSVTVVTRELIEDQ--GATSLADAL-RNVPGVTFGAGEGGNGDsFSIRGFSASgdIYVDGLRDPGQYR-- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 116 rqldsIDPFNIEHIEVISGATS-LYGGGSTGGLINIVTKKGQPETQMEFEAGTKSgfnsskdHDERIASAISGG--NEHI 192
Cdd:COG4774    76 -----RDTFNLERVEVLKGPASvLYGRGSPGGVINLVTKRPTDEPFTEVTLTYGS-------DGQRRATLDVNGplGDDL 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 193 SGRMSVAYQKFGGWYDGngdatlldntqtglQYSDRLDVMGTGTLNIDETQQLQLITQYYKSQGDDDYGLNLGKNFSAIS 272
Cdd:COG4774   144 AYRLNGMYRDSDSYRDG--------------VDNDRWGIAPSLTWRLGDRTRLTLDYEYQDDDRTPDYGVPAVANGRPVD 209

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 273 GSSSPYVskGLNSDRIpGTERHLISMQYS---NSDFlgqELVGQVYYRD---ESLMFYPFPTVDANKKATAFSSSQQDTD 346
Cdd:COG4774   210 VDRSTFY--GQPDDYS-DSETDSATLRLEhdfNDNW---TLRNALRYSDydrDYRNTYPTGGNATGTVTRSAYRRDQDND 283

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 347 QYGAKLTLNSKPLDGW---QLTYGLDADHERFTSNQMFFDLAQASAS-----GGLNNQKIFTTGRYPGYDISNLAAFLQS 418
Cdd:COG4774   284 TLSNQTDLTGKFDTGGvkhTLLAGVEYSREDSDNARYSGGGTAPTVNlynpvYGAPVTGPTLGGADNDSRTDTTGLYLQD 363

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 419 SYDINEIFTLSGGVRYQYTENKVDDFIGFAQQQqiasgkvksadaipggSTDYDNFLFNAGLLMHITERQQAWVNFSQGV 498
Cdd:COG4774   364 TISLTDRWSLLAGLRYDRFDTDYTDRTTGATTS----------------SYDDSAFSPRAGLVYKPTPNLSLYASYSTSF 427

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 499 ELPDpgkyygrGTYGAAVNGhlpltnsvnvSASKLQgvKVDSYELGWRYT--GDNLRTQIAAYYslSDKSVLANKDLT-- 574
Cdd:COG4774   428 NPGG-------GAPSLSNAG----------QALDPE--KSRQYEVGVKWDllDGRLSLTAALFR--IEKTNVRTTDPAnp 486

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 575 -ISVVDDKRRIYGVEGAVDYFIPDtNWSTGANFNVLKTE-----------------SKVNGS-WQKYDVkvaspskatay 635
Cdd:COG4774   487 gVYVQTGEQRSRGVELEATGELTP-GWSVLAGYTYLDAEitksanaanvgnrlpnvPRHSASlWTTYDL----------- 554

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 636 igwAPDPWSL--RVQSTTSFNVSDAAGYSIDGYTTVDLLGSYQL--PVgKLSLSVENLFDRDyttvwgqraplYYSPGYG 711
Cdd:COG4774   555 ---PLPGLTLggGVRYVGSRYADAANTVKLPSYTRFDAGASYRLnkNL-TLRLNVNNLTDKR-----------YYASAYG 619

                         730       740
                  ....*....|....*....|..
gi 2324330345 712 paSLYDYKGRGRTFGMNYSVQF 733
Cdd:COG4774   620 --SGYVTPGAPRTVLLSASYRF 639
TonB-hemlactrns TIGR01786
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model ...
 31-733 1.88e-37

TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


Pssm-ID: 273808 [Multi-domain]  Cd Length: 715  Bit Score: 149.49  E-value: 1.88e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  31 ETMVVSANR----SNRTVAEMAQTTWVIEKTELEQQiqGGKELKDALAQlIPGLDVSSQSRTNY-GMNVRG----RpLVV 101
Cdd:TIGR01786   1 DTITVTATRtadpQRRDLSVTPASVSVISREQLKSQ--QVRNLRDLLRY-EPGVSVVEGGRGGSqGINIRGldknR-VAV 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 102 LIDGVRLNSSRTDSRQLD----SIDPFNIEHIEVISGATS-LYGGGSTGGLINIVTKKG----QPETQmeFEAGTKSGFn 172
Cdd:TIGR01786  77 LVDGIRQNTSYGGQGSTFyainSIDPELIKSIEIVKGASSsLYGSGALGGVVAFRTKDAadllKPGKD--LGGLSKLGY- 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 173 SSKDHDERIASAISGGNEHISGrMSVAYQKFGGWYDGNGDATLLDNTQ----TGLQYSDRlDVMGTGTLNIDETQQLQLI 248
Cdd:TIGR01786 154 SSANNRFTQSVAAAGRNDDVDA-LVQATYRRGHELKNGNKANIGNESKrskpNPSDYKSQ-SFLAKLGWQLNDAHRLGLS 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 249 TQYYKSQGDDD---YGLNLGKNFSAISGSSSPYVSKGLNSDRipgteRHLISMQYSNSDFL-------GQELVGQVYYRD 318
Cdd:TIGR01786 232 LEYTQTDYDEPemtNTSYLTKPLGAPLLSSTVVLGDSKTRDR-----RTGLDYELNPDNSWldtvklaLDKQYIQLYNYL 306

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 319 ESLMFYPFPTVDANkkatAFSSSQQDTDQYGAKLTLNS-KPLDGWQLTYGLDADHERFTSNQMFFDLAQAsasgGLNNQK 397
Cdd:TIGR01786 307 NATSASDYPGVDKN----GRYKDKYDYYTLGFDTNNKIeFSVHSLSLTYGLDRFKDKVSTGDSRRNLPTA----AYNLYG 378

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 398 IFttGRYPGYDISNLAAFLQSSYDINEIFTLSGGVRYQYTENKvddfigfaqqqqiasGKVKSADAIPGGSTDYDNFLFN 477
Cdd:TIGR01786 379 YE--GENRPVKGSNFGLFLQDNIKLGDWLSLSAGLRYDHYKTD---------------PKADESKDYGAISKTYSRWSPS 441

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 478 AGLLMHITERQQAWVNFSQGVELPDPGKYYGRGtYGAAVNGHLPLTNSvnvsasKLQGVKVDSYELGWRYTGDNLRTQIA 557
Cdd:TIGR01786 442 LGLTYKPTPWLTLYYSYSQGFRAPSFDELYGTG-AHPGGGPYTFLPNP------NLKPETSKNWEIGINLHFDQLDFKVS 514

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 558 AYYS----------LSDKSVLAN--KDLTIS--VVDDKRRIYGVEGAVDY-----FIPDTNWSTGANFNVLKTESKVNGS 618
Cdd:TIGR01786 515 YFRNdykdfidlgiGVTAKGNMAqvGSNTITnyVNIDNARIRGIELSGRYdlgsfFSGPDGWTTTLKYGYTKGKDSDTNP 594

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 619 WQKYdvkvASPSKATAYIGWA--PDPWSLRVQSTTS--FNVSDAAGYSI-------------DGYTTVDLLGSYQlPVGK 681
Cdd:TIGR01786 595 WLNA----ITPLKVVLGLGYDhpDEKWGVGLTLTFSgaKDAVDAYATYYengeaakagplrtPSYTVVDLYGYYK-PNKN 669

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2324330345 682 LSLS--VENLFDRDYTTvwgqraplYYSPGYGPASLYDYKGRGRTFGMNYSVQF 733
Cdd:TIGR01786 670 LTLRfgVYNLLDRKYTT--------WESARQAGPLATGYTAPGRNYKASVEYKF 715
FhuE COG4773
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ...
 34-733 4.91e-37

Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];


Pssm-ID: 443805 [Multi-domain]  Cd Length: 692  Bit Score: 148.12  E-value: 4.91e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  34 VVSANRSNRTVAEMAQTTWVIEKTELEQQiqGGKELKDALAQlIPGLDVSSQSRTNY-GMNVRG-RPLVVLIDGVRLNSS 111
Cdd:COG4773    52 SSTATKLDTPLRETPQSVSVVTRQLIEDQ--GATTLDDALRN-VPGVTVSSYDGGGRdSFSIRGfSIDNYLRDGLPLGGF 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 112 RTDSrqldsIDPFNIEHIEVISGATS-LYGGGSTGGLINIVTKKGQPETQMEFEAGTKSgfnsskdHDERIASAISGG-- 188
Cdd:COG4773   129 GGGQ-----PDTANLERVEVLKGPAGlLYGAGSPGGLVNLVTKRPTAEPQGEVSLSAGS-------WDTYRATADVGGpl 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 189 --NEHISGRMSVAYQKFGGWYDGngdatlldntqtglQYSDRLDVMGTGTLNIDETQQLQLITQYYKSQGDDDYG-LNLG 265
Cdd:COG4773   197 neDGTLRYRLNAAYEDGDSFRDG--------------VDNRRTLIAPSLDWDLTDDTTLTLGAEYQDDDSTGDRGfLPLD 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 266 KNFSAISGSSSpYVSKGLNSDripgTERHLISMQYS---NSDFlgqELVGQVYYRD---ESLMFYPFPTVDANKKATA-- 337
Cdd:COG4773   263 GTLLDLPRSTN-LGEPWDYYD----TETTTLFAELEhrfNDDW---SLRANARYSDsdrDGRSAYAYGAPDAATGTLTry 334

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 338 FSSSQQDTDQYGAKLTLNSK-PLDGW--QLTYGLDADHERFTSNQMFFDLAQASASGGLNNQKIFTTGRYPGYDISNLAA 414
Cdd:COG4773   335 ASARDGDSRSDSLDANLNGKfETGGLehTLLVGADYSRYDSDSDSATAGTINIYNPVYGNLPEPDFDASDTDTTTRQTGL 414

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 415 FLQSSYDINEIFTLSGGVRYQYTENKVDDFIGFAQQqqiasgkvksadaipggSTDYDNFLFNAGLLMHITERQQAWVNF 494
Cdd:COG4773   415 YAQDQISLTDRLSLLLGGRYDWYETDSTNRLGGSTT-----------------SYDDSAFTPRAGLVYDLTPGLSLYASY 477

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 495 SQGVELPDpgkyyGRGTYGAAvnghLPLTNSvnvsasklqgvkvDSYELG--WRYTGDNLRTQiAAYYSLSDKSVL--AN 570
Cdd:COG4773   478 SESFEPQS-----GADNNGNP----LDPETG-------------KQYEAGvkGELFDGRLNAT-LAVFDITQKNVAttDP 534

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 571 KDLTISVVDDKRRIYGVEGAVDYFIPDtNWSTGANFNVLKTESKVNGSWQKYDVKVASPSK-ATAYIGWAPDPWSLR--- 646
Cdd:COG4773   535 DNPNFYVQVGEVRSRGVELELSGELTP-GLNLIAGYTYTDAKITKDADALEGKRLTNVPRHtASLWTTYRFPSGALKglg 613

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 647 ----VQSTTSFNVSDAAGYSIDGYTTVDLLGSYQLPVG-KLSLSVENLFDRDYTTVWGQRAPLYYspgygpaslydykGR 721
Cdd:COG4773   614 lgggVRYVGERYGDAANTFTLPSYTLVDAGARYDLGKNwTLQLNVNNLFDKKYYASSGSRGYVYY-------------GA 680

                         730
                  ....*....|..
gi 2324330345 722 GRTFGMNYSVQF 733
Cdd:COG4773   681 PRNVRLSLSYKF 692
TonB_dep_Rec pfam00593
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
 238-732 1.61e-31

TonB dependent receptor; This model now only covers the conserved part of the barrel structure.


Pssm-ID: 395474 [Multi-domain]  Cd Length: 475  Bit Score: 128.73  E-value: 1.61e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 238 NIDETQQLQLITQYYKSQGDDDYGLNLGKNFSAISGSSSPYVSKGLNSDRIPGTERHL-ISMQYSNSDFLGQELVGQVYY 316
Cdd:pfam00593   8 LLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLgYDYDLGDGLSWLSTLRLGLRY 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 317 RDESLMFYPFPTVDANKKATAFSSSQQDTDQYGAKLTLNSKplDGWQLTYGLDADHERFTSNQmffdlaQASASGGLNNQ 396
Cdd:pfam00593  88 SSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLD--LSHDLLLGVELRTAGLDYRR------LDDDAYDPYDP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 397 KIFTTGRYPGYDISNLAAFLQSSYDINEIFTLSGGVRYQYTENKVDDFIGFAQQqqiasgkvksadaipgGSTDYDNFLF 476
Cdd:pfam00593 160 ANPSSSSYSDTTTDSYGLYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGDN----------------FSRSYSAFSP 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 477 NAGLLMHITERQQAWVNFSQGVELPDPGKYYGRGTYGAavnghlplTNSVNVSASKLQGVKVDSYELGWRYTGDNLRTQI 556
Cdd:pfam00593 224 RLGLVYKPTDNLSLYASYSRGFRAPSLGELYGSGSGGG--------GGAVAGGNPDLKPETSDNYELGLKYDDGRLSLSL 295

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 557 AAYYS-LSDKSVLANKDLTISVVD------DKRRIYGVEGAVDYFIPDTNWStGANFNVLKTESKVNGSWQKYDVKVASP 629
Cdd:pfam00593 296 ALFYIdIKNLITSDPDGPGLGGTVytytnvGKARIRGVELELSGRLWGLGLS-GGGYTYTDADDDADADDTGNPLPNVPR 374

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 630 SKATAYIGWAP--DPWSLR-----VQSTTSFNVSDAAGYSIDGYTTVDLLGSYQLPVG-KLSLSVENLFDRDYTTVWgqr 701
Cdd:pfam00593 375 HTANLGLTYDFplGGWGARlgaryVGSGERRYGDAANTFKTPGYTLVDLSAGYRLNKNlTLRLGVNNLFDKYYKRYY--- 451

                         490       500       510
                  ....*....|....*....|....*....|.
gi 2324330345 702 aplyyspGYGPASLYDYKGRGRTFGMNYSVQ 732
Cdd:pfam00593 452 -------SSGGGNLGGYPGPGRTFYLGLSYK 475
BtuB COG4206
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
33-315 6.77e-26

Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];


Pssm-ID: 443355 [Multi-domain]  Cd Length: 276  Bit Score: 108.04  E-value: 6.77e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  33 MVVSANRSNRTVAEMAQTTWVIEKTELEQQiqGGKELKDALAQLiPGLDVSSQSR--TNYGMNVRG----RPLVvLIDGV 106
Cdd:COG4206     1 VVVTATRLEQSKSDLTGSVTVIDAEELERS--GATSLADALRRV-PGVQVSSSGGpgSAASISIRGlgsnQTLV-LIDGV 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 107 RLNSSRTDSRQLDSIDPFNIEHIEVISGATS-LYGGGSTGGLINIVTKKGQPETQMEFEAGTKSgFNSSkdhdeRIASAI 185
Cdd:COG4206    77 PLNDPSLGGVDLSLIPPDDIERIEVLKGAASaLYGSDAIGGVINITTKKGKKGFKGSVSASYGS-FGTR-----RLSASL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 186 SGGNEHISGRMSVAYQKFGGWYDGNGDATLLDNTqtglqysDRLDVMGTGTLNIDETQQLQLITQYYKSQGDDDYGLNLG 265
Cdd:COG4206   151 SGGAGKFSYSLSASYRRSDGYRYNDPDLRNNDGY-------ENTSLNARLGYKLGDNGSLSLSGGYSDSERGYPGAVGSD 223

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2324330345 266 KNFSAiSGSSSPYVSKGLNSDRIPGTERHLISMQYSNSDFLGQELVGQVY 315
Cdd:COG4206   224 RNLRL-SLSLEYKLSDGWSLLLLAYYYYDRDYEDGGGDSAGTSNTDGARA 272
Plug pfam07715
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ...
 43-146 8.00e-17

TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.


Pssm-ID: 462243 [Multi-domain]  Cd Length: 107  Bit Score: 76.54  E-value: 8.00e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  43 TVAEMAQTTWVIEKTELEQQiqGGKELKDALaQLIPGLDVSSQSRTNYG-MNVRG---RPLVVLIDGVRLNSSRTDSRQL 118
Cdd:pfam07715   1 DLRDTPGSVSVVTAEDIEDQ--GATNLADAL-RGVPGVSVSSGGGGGGSsISIRGfgsNRVLVLVDGVPLNSGGGGSVDL 77

                          90       100
                  ....*....|....*....|....*....
gi 2324330345 119 DSIDPFNIEHIEVISGATS-LYGGGSTGG 146
Cdd:pfam07715  78 NSIDPEDIERVEVLKGPASaLYGSGAIGG 106
PRK10064 PRK10064
catecholate siderophore receptor CirA; Provisional
 17-154 2.12e-13

catecholate siderophore receptor CirA; Provisional


Pssm-ID: 236646 [Multi-domain]  Cd Length: 663  Bit Score: 73.77  E-value: 2.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  17 LAMMAPAVAQQNSDETMVVSANRSNRTVAEMAQTTWVIEKTELeqQIQGGKELKDALAQlIPGLDVSSQSRTNYGMNVRG 96
Cdd:PRK10064   17 ISCAWPVLAVDDDGETMVVTASAVEQNLKDAPASISVITQEDL--QRKPVQNLKDVLKE-VPGVQLTNEGDNRKGVSIRG 93

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2324330345  97 RP---LVVLIDGVRLNSS----RTDSRQLDSIDPFNIEHIEVISGA-TSLYGGGSTGGLINIVTKK 154
Cdd:PRK10064   94 LDssyTLILIDGKRVNSRnavfRHNDFDLNWIPVDAIERIEVVRGPmSSLYGSDALGGVVNIITKK 159
btuB PRK10641
TonB-dependent vitamin B12 receptor BtuB;
2-169 1.18e-12

TonB-dependent vitamin B12 receptor BtuB;


Pssm-ID: 236730 [Multi-domain]  Cd Length: 614  Bit Score: 71.18  E-value: 1.18e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345   2 MItKKHTLwalnplLLAMMAPAV---AQQNSDETMVVSANRSNRTVAEMAQTTWVIEKTELEQ-QiqgGKELKDALAQLi 77
Cdd:PRK10641    1 MI-KKASL------LTALSVTAFsgwAQDTSPDTLVVTANRFQQPVSTVLAPTTVVTRDDIDRwQ---SKSVNDVLRRL- 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  78 PGLDVSS-----QSRTNYgmnVRG---RPLVVLIDGVRLNSSR-TDSRQLDSIDPFNIEHIEVISGATS-LYGGGSTGGL 147
Cdd:PRK10641   70 PGVDIAQngglgQLSSLF---IRGtnsSHVLVLIDGVRLNQAGiSGSADLSQIPISLVQRIEYIRGPRSaVYGSDAIGGV 146

                         170       180
                  ....*....|....*....|..
gi 2324330345 148 INIVTKKGQPETQMEFEAGTKS 169
Cdd:PRK10641  147 VNIITTRDKPGTTLSAGWGSNG 168
PRK13483 PRK13483
ligand-gated channel protein;
11-733 8.11e-12

ligand-gated channel protein;


Pssm-ID: 184080 [Multi-domain]  Cd Length: 660  Bit Score: 68.65  E-value: 8.11e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  11 ALNPLLLAMMAPAVAQQNSD---ETMVVSANRSNRTVAEMAQTTWVIEKTELEQQIQggKELKDALAQlIPGLDVSSQSR 87
Cdd:PRK13483   11 ALCLLPAVFVTHALAQAAPDktmETVVVTASGYEQQIRDAPASISVITREDLENRFY--RDLTDALLD-VPGVVVTGGGD 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  88 TNyGMNVRGRP---LVVLIDGVRLNSSRT----DSRQLDS--IDPFN-IEHIEVISGA-TSLYGGGSTGGLINIVTKKGQ 156
Cdd:PRK13483   88 RT-DISLRGMGsqyTLILVDGKRQSSRETrpnsDGPGVEQawTPPLAaIERIEVIRGPmSSLYGSDAIGGVINIITRKVP 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 157 PEtqmefeagtksgfnsskdhderiasaisggnehisgrmsvayqkfggWYdGN--GDATLLDNTQTGLQYSDRLDVmgT 234
Cdd:PRK13483  167 NE-----------------------------------------------WQ-GEvrLDTTLQENSDSGNVYQANFFV--N 196

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 235 GTLnIDETQQLQLITQYYKSQGDD-DYGLNlGKNFSAISG--SSSPyvskglnsdripgTERHLISMqysnsdflgqELV 311
Cdd:PRK13483  197 GPL-IKDLLGLQLYGQYTQREEDDiEGGYR-DKDARSLTAklALTP-------------NEDHDIML----------EVG 251

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 312 GQVYYRDESL--MFYPFPTVDANKKATAFSSSQQDTDQYGAKLTLNSKPLDGWQLTYgldADHERFT--SNQMFFD--LA 385
Cdd:PRK13483  252 TSNQERDSTVgkTVAPLAPGESCGRRGCPESSTTEYERSTVSLSHTGRWDFGTSDTY---IQHEEFDnkSREMKIKntDF 328

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 386 QASASGGLNNQKIFTTG---------RYPGYDISNL--------AAFLQSSYDINEIFTLSGGVRYQYTENkvddfigFA 448
Cdd:PRK13483  329 QSSLVAPLGQEHTLTFGaaynhqdltDETSNQISDLtdisrtqwAVFSEDEWRIADDFALTGGLRLDHDEN-------FG 401

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 449 QQqqiASGKV----KSADA--IPGG-STDydnflFNAGLLMHITErqqAWVNFSQGvelpdpGKYYGrgtygaavNGHLP 521
Cdd:PRK13483  402 GH---VSPRVygvwNLAPSwtVKGGvSTG-----FRAPSLRQTTP---DWGQVSRG------GNIYG--------NPDLK 456

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 522 LTNSVNvsasklqgvkvdsYELGWRY-TGDNLRTQIAAYYS-LSDK--------SVLAN------KDLTISVVDDKRRIY 585
Cdd:PRK13483  457 PETSLN-------------KELGLYYdLGSGLTASLTVFYNeFKDKitrvacpaTQCTDgpnqfgADPTTYVNIDEAVTQ 523

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 586 GVEGAVDYFIPDTnWSTGANFNVLKTESKvNGSWQKYDVKVASPSKATAYIGWAP-DPWS--LRV-------QSTTSFNV 655
Cdd:PRK13483  524 GVEASLSYPITST-LSLSGNYTYTDSEQK-SGAYKGSPLNQLPKHLFQASLNWEPtDRLNswARVnyrgeesQPTTGPSS 601

                         730       740       750       760       770       780       790
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2324330345 656 SDAAGYSidgYTTVDLLGSYQLPVG-KLSLSVENLFDRDYTTVwgqraplyyspgygpasLYDYKGRGRTFGMNYSVQF 733
Cdd:PRK13483  602 SSFIAPS---YTFLDLGANYQLTDNlKLSAGIYNLFDKEINYE-----------------EYGYVEDGRRYWLGMTYSF 660
PRK13513 PRK13513
ligand-gated channel protein;
18-167 5.51e-09

ligand-gated channel protein;


Pssm-ID: 184104 [Multi-domain]  Cd Length: 659  Bit Score: 59.40  E-value: 5.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  18 AMMAPAVAQQNSDETMVVSANRSNRTVAEMAQTTWVIEKTELEQQIQggKELKDALAQlIPGLDV----SSQSRTNYGMN 93
Cdd:PRK13513   23 AYAAEKTNTATPTDTMVVTASGFQQRIQDAPASISVVTREQLENKAY--RDVTDALKD-VPGVVVtgggSTSDISIRGMA 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  94 vrGRPLVVLIDGVRLNSSRTDSRQLDS------IDPFN-IEHIEVISGA-TSLYGGGSTGGLINIVTKKGQPETQMEFEA 165
Cdd:PRK13513  100 --AKYTLILVDGKRVDTRSTRPNSDGSgieqgwLPPLAaIERIEVVRGPmSSLYGSDAMGGVINIITRKVQKEWHGSLRA 177


                  ..
gi 2324330345 166 GT 167
Cdd:PRK13513  178 DA 179
PRK13486 PRK13486
TonB-dependent receptor;
28-166 7.63e-09

TonB-dependent receptor;


Pssm-ID: 139606 [Multi-domain]  Cd Length: 696  Bit Score: 58.88  E-value: 7.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  28 NSDETMVVSANRSNRTVAEMAQTTWVIEKTELeqQIQGGKELKDALaQLIPGLDVSSQSRTNYGM--NVRGRP---LVVL 102
Cdd:PRK13486   23 AAEDVMIVSASGYEKKLTNAAASVSVISQEEL--QSSQYHDLAEAL-RSVEGVDVESGTGKTGGLeiSIRGMPasyTLIL 99

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2324330345 103 IDGVRLNSSRT------DSRQLDSIDPFN-IEHIEVISGATS-LYGGGSTGGLINIVTKKGQPETQMEFEAG 166
Cdd:PRK13486  100 IDGVRQGGSSDvtpngfSAMNTGFMPPLAaIERIEVIRGPMStLYGSDAMGGVVNIITRKNADKWLSSVNAG 171
PRK13484 PRK13484
IreA family TonB-dependent siderophore receptor;
19-692 3.04e-08

IreA family TonB-dependent siderophore receptor;


Pssm-ID: 139605 [Multi-domain]  Cd Length: 682  Bit Score: 56.94  E-value: 3.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  19 MMAPAVAQQNSDETMVVSANRSNRTVAEMAQTTWVIEKTELEQQIQggKELKDALAQlIPGLDVSSQSRTNyGMNVRGRP 98
Cdd:PRK13484   19 ISSGYASSDKKEDTLVVTASGFTQQLRNAPASVSVITSEQLQKKPV--SDLVDAVKD-VEGISITGGNEKP-DISIRGLS 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  99 ---LVVLIDGVRLNSSrtDSRQLDS-------IDPFN-IEHIEVISGA-TSLYGGGSTGGLINIVTKkgqPETQMEFEAG 166
Cdd:PRK13484   95 gdyTLILVDGRRQSGR--ESRPNGSggfeagfIPPVEaIERIEVIRGPmSSLYGSDAIGGVINIITK---PVNNQTWDGV 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 167 TksGFNSSKDHDERIASAISgGNEHISGRM---SVAYQKFGGWYdgngdATLLDNTQTGLQYSDRLDVmgTGTLNIDETQ 243
Cdd:PRK13484  170 L--GLGGIIQEHGKFGNSTT-NDFYLSGPLikdKLGLQLYGGMN-----YRKEDSISQGTPAKDNKNI--TATLQFTPTE 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 244 QLQLITQYYKSqgDDDYGLNLGKNFSAIS---GSSSPYVSKGLNSDRipgteRHLISMQYSNSDFLGQELvgqVYYRDES 320
Cdd:PRK13484  240 SQKFVFEYGKN--NQVHTLTPGESLDAWTmrgNLKQPNSKRETHNSR-----SHWVAAWNAQGEILHPEI---AVYQEKV 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 321 LMFYPFPTVDankKATAFSSSQQDTDQYGAKLTLNSKP---LDGWQLTYGLDADHERftsnqmffdLAQASASGGLNNQK 397
Cdd:PRK13484  310 IREVKSGKKD---KYNHWDLNYESRKPEITNTIIDAKVtafLPENVLTIGGQFQHAE---------LRDDSATGKKTTET 377

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 398 IFTTgrypgydISNLAAFLQSSYDINEIFTLSGGVRyqytenkVDDFIGFAQQQQIASGKVKSADaipggstdyDNFLFN 477
Cdd:PRK13484  378 QSVS-------IKQKAVFIENEYAATDSLALTGGLR-------LDNHEIYGSYWNPRLYAVYNLT---------DNLTLK 434

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 478 AGLlmhiterqqAWVNFSQGVELPDPGkyYGRGTYGAA--VNGHLPLTNSVNVSAsklqgvkvdsyELGWRYTGDNLRTQ 555
Cdd:PRK13484  435 GGI---------AKAFRAPSIREVSPG--FGTLTQGGAsiMYGNRDLKPETSVTE-----------EIGIIYSNDSGFSA 492

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 556 IAAYYSLSDKSVLANKD---------LTISVVDD--KRRIYGVEGAVDYFIPDtNWSTGANFNVLKT-----ESKVNG-S 618
Cdd:PRK13484  493 SATLFNTDFKNKLTSYDigtkdpvtgLNTFIYDNvgEANIRGVELATQIPVYD-KWHVSANYTFTDSrrksdDESLNGkS 571

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 619 WQKYDVKVASPSKATAYIGWAPDpwslrvQSTTSFNVSDAAGYSI--------------DGYTTVDLLGSYQ-LPVGKLS 683
Cdd:PRK13484  572 LKGEPLERTPRHAANAKLEWDYT------QDITFYSSLNYTGKQIwaaqrngakvprvrNGFTSMDIGLNYQiLPDTLIN 645


                  ....*....
gi 2324330345 684 LSVENLFDR 692
Cdd:PRK13484  646 FAVLNVTDR 654
PRK13524 PRK13524
FepA family TonB-dependent siderophore receptor;
2-213 4.00e-08

FepA family TonB-dependent siderophore receptor;


Pssm-ID: 237410 [Multi-domain]  Cd Length: 744  Bit Score: 56.96  E-value: 4.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345   2 MITKKHTLWALNPL-LLAMMAPAVAQQ--------NSDETMVVSANRSNRtvaeMAQTTWVIEKTELEQqiqggKELKDA 72
Cdd:PRK13524    1 MNKKIHSLALLVNLgIYGVAQAAEAEDaktddtpaSHEDTIVVTAAEQNL----QAPGVSTITAEDIRK-----RPPAND 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  73 LAQLI---PGLDVSSQSRT-NYGMN----VRG---RPLVVLIDG--------VRLN-SSRTDSRQlDS--IDPFNIEHIE 130
Cdd:PRK13524   72 VSEIIrtmPGVNLTGNSTSgQRGNNrqidIRGmgpENTLILIDGkpvssrnsVRYGwRGERDTRG-DTnwVPPEMIERIE 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 131 VISG-ATSLYGGGSTGGLINIVTKKGQPETQmefeaGTKSGFNSSKDHDERIASAISGGNehISGRMS--VAYQKFGGWY 207
Cdd:PRK13524  151 VLRGpAAARYGNGAAGGVVNIITKKPTGEWH-----GSWNTYFNAPEHKAEGATKRTNFS--LSGPLGdeLSFRLYGNLN 223


                  ....*.
gi 2324330345 208 DGNGDA 213
Cdd:PRK13524  224 KTQADA 229
PRK10044 PRK10044
ferrichrome outer membrane transporter; Provisional
 35-176 5.48e-07

ferrichrome outer membrane transporter; Provisional


Pssm-ID: 236643 [Multi-domain]  Cd Length: 727  Bit Score: 53.22  E-value: 5.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  35 VSANRSnrtvAEMAQTTWVIEK--------TELEQQIQGGKELKDALAqLIPGLDVSSQ--SRTNYGMNVRGRPLVVL-- 102
Cdd:PRK10044   61 IAAKRS----ATGTKTDTPIEKtpqsisvvTAEEMALHQPKSVKEALS-YTPGVSVGTRgaSNTYDHLIIRGFAASGQsq 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 103 ---IDGVRLNSsrtDSRQLDSIDPFNIEHIEVISGATS-LYGGGSTGGLINIVTKKGQPET--QMEFEAGTKSGFNSSKD 176
Cdd:PRK10044  136 nnyLDGLKLQG---NFYNDAVIDPYMLERAELMRGPVSvLYGKSNPGGLLNMVSKRPTTEPlkEVQFKMGTDNLFQTGFD 212
PRK14050 PRK14050
TonB-dependent siderophore receptor;
121-189 2.49e-06

TonB-dependent siderophore receptor;


Pssm-ID: 237595 [Multi-domain]  Cd Length: 728  Bit Score: 50.96  E-value: 2.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 121 IDPFNIEHIEVISGATS-LYGGGSTGGLINIVTKKGQPETQMEFEAGTKS------GF------NSSKDHDERIASAISG 187
Cdd:PRK14050  153 IDPFMLERVEVLKGPASvLYGGSNPGGIVNMVSKRPLDEPLYYTEIGINSygnaftGFdvgdklSDDGTVRYRVTGKVAG 232


                  ..
gi 2324330345 188 GN 189
Cdd:PRK14050  233 GD 234
PRK09840 PRK09840
catecholate siderophore receptor Fiu; Provisional
 1-204 4.78e-06

catecholate siderophore receptor Fiu; Provisional


Pssm-ID: 182105 [Multi-domain]  Cd Length: 761  Bit Score: 50.19  E-value: 4.78e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345   1 MMITKKHTLWALNPL----LLAMMAPAVAQQ-------NSDETMVVSAN-------------RSNRTVAEMAQTTWVIEK 56
Cdd:PRK09840    1 MENNRNFPARQFHSLaffaGLCIGITPVAQAlaaegqtNADDTLVVEAStpslyapdqsadpKFSQPLADTTQTITVISE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  57 TELEQQiqGGKELKDALAQlIPGLD---VSSQSRTNYGMNVRGRPL----VVLIDGVRlnssrtdsrQLDSI--DPFNIE 127
Cdd:PRK09840   81 QVIKDQ--GATNLTEALRN-VPGVGtffAGENGNTTTGDAIYMRGFdtsnSIYVDGIR---------DIGSIsrDTFNTE 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 128 HIEVISGATSL-YGGGSTGGLINIVTKkgQPETQMEFEAGTKSGFNSSKDHDERIASAISGG----------NEHISGRM 196
Cdd:PRK09840  149 QVEVIKGPSGTdYGRSAPTGSINMISK--QPRNDSGIDASASIGSAWFRRGTLDVNQVIGDTtavrlnvmgeKTHDAGRD 226


                  ....*...
gi 2324330345 197 SVAYQKFG 204
Cdd:PRK09840  227 KVKNERYG 234
OMP_b-brl_3 pfam14905
Outer membrane protein beta-barrel family; This family includes proteins annotated as TonB ...
 296-730 2.70e-04

Outer membrane protein beta-barrel family; This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.


Pssm-ID: 434300 [Multi-domain]  Cd Length: 407  Bit Score: 43.80  E-value: 2.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 296 ISMQYSNSDFLGQElvgqvYYRDESlmFYPFPTVDANKKATAFSSSQQDTDQYGAKLTLnSKPL-DGWQLTYGLDADHER 374
Cdd:pfam14905  12 FDADYSNYNNDSDS-----DYTNSD--YNNPGGLEPFNDSLQRNNSPSNINIYTAQLDY-TKPLgKKGKLEAGAKYSFRN 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 375 FTSNQMFFDLAqasasgglNNQKIFTTGRYPGYDIS--NLAAFLQSSYDINEiFTLSGGVRYQYTENKVDdfigfaqqqQ 452
Cdd:pfam14905  84 NDNDYDYENLD--------NGEWVPDPSRSNDFDYKenIYAAYASYSKKFGK-WSYQAGLRAEYTDIDGD---------S 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 453 IASGKVKsadaipggSTDYDNFLFNAGLLMHITERQQAWVNFsqgvelpdpgkYYGRGT---YGAAVNGHLPLTNSVNVS 529
Cdd:pfam14905 146 VTTNETF--------KRNYFNLFPSASLSYKLNDNNSLQLSL-----------YYRRIInrpSYWDLNPFRNYSDPYNYS 206

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 530 A--SKLQGVKVDSYELGWRYtgdNLRTQIAAYYSLSDksvlaNKDLTISVVDDkrriygvEGAVDYFIP---DTNWSTGA 604
Cdd:pfam14905 207 QgnPNLKPEYTNSFELGYTY---KWKLSLSLSYRYTN-----DVIQQTFITDD-------NDNVTYTTYenlGKSNSYGL 271

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 605 NFNV-------LKTESKVNGSWQKYDVKVASPSKATAYIGWA------PDPWSLRVQSTTSFNVSDAAG-YSIDGYTTVD 670
Cdd:pfam14905 272 ELSAsfnptkwWSLNGNLNGYYNKYKIDGSLNSDFSNFGFNWnlnntfTLPKGWSLQLNGNYRSPRVTGqGKIKPFYSLD 351

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2324330345 671 LLGSYQLPVGKL--SLSVENLFDRDYTTVWGQRAPLYYspgygpaSLYDYKGRGRTFGMNYS 730
Cdd:pfam14905 352 LGLSKSFLKKKLtlSLNVNDIFNTRKFRSTTNYDNGFI-------QSYNNKWDSRSVRLSLS 406
PRK13528 PRK13528
outer membrane receptor FepA; Provisional
 9-154 7.64e-04

outer membrane receptor FepA; Provisional


Pssm-ID: 237413 [Multi-domain]  Cd Length: 727  Bit Score: 42.82  E-value: 7.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345   9 LWALNPLL----LAMMAPAVAQQNSDETMVVSANrsnrtvAEmaqttwviekTELEQQ----------IQGGKELKDaLA 74
Cdd:PRK13528    9 LWLLTVLLvglnSPVSAAESSDDDNGETMVVEAT------AE----------QELKQQpgvsiitaedIKKRPPVND-LS 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345  75 QLI---PGLDVSSQSRTN-YGMN----VRG---RPLVVLIDGVRL---NSSR------TDSRQlDS--IDPFNIEHIEVI 132
Cdd:PRK13528   72 DIIrkmPGVNLTGNSASGtRGNNrqidIRGmgpENTLILIDGVPVtsrNSVRyswrgeRDTRG-DTnwVPPEMVERIEVI 150

                         170       180
                  ....*....|....*....|...
gi 2324330345 133 SG-ATSLYGGGSTGGLINIVTKK 154
Cdd:PRK13528  151 RGpAAARYGSGAAGGVVNIITKR 173
Toluene_X pfam03349
Outer membrane protein transport protein (OMPP1/FadL/TodX); This family includes TodX from ...
 419-676 9.65e-04

Outer membrane protein transport protein (OMPP1/FadL/TodX); This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.


Pssm-ID: 427255 [Multi-domain]  Cd Length: 421  Bit Score: 42.39  E-value: 9.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 419 SYDINEIFTLSGGVRYQYTENKVDDFIGFAQQQQIASGKVKSADAIPGGST-DYDN-----FLFNAGLLMHITERQQAWV 492
Cdd:pfam03349 138 AYRVNDELSVGLGVTAVRADGKLSRLAGLLQQAKEIPGVAGPNIGPSNADNlSHLKgddtsPGFNLGALYEPDEDNRIGF 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 493 NFSQGVELPDPGKYYGRGTYGAAVNGHLPLTNSVNVSAS-KLQGVKVDSYELGWRYtgdNLRTQIAAYYSLSDKSVLANK 571
Cdd:pfam03349 218 TYRSKVKMKLKGHYEVDYGPGALGLGLGLGGAATGATVPgTLTITLPAIAELSGFH---QFNDQWAIHYSVKWTGWSSFD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2324330345 572 DLTISVVDDKRRIYGVEGAVDyfipDTNWSTGanfnvlkTESKVNGSWQ-----KYDVKVASPSKATAYIgwaPDpwslr 646
Cdd:pfam03349 295 ELTAVFAKGKTSFTKDEGYRD----TWRWALG-------TTYQVNDRLTlragvAYDPSPTPDENRTIRI---PD----- 355

                         250       260       270
                  ....*....|....*....|....*....|
gi 2324330345 647 vqsTTSFNVSDAAGYSIDGYTTVDLLGSYQ 676
Cdd:pfam03349 356 ---GDRTWYSLGATYAFTPDLTIDAGFAYL 382
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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