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Conserved domains on  [gi|2410727750|ref|WP_268541135|]
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universal stress protein [Candidatus Nitrosotenuis cloacae]

Protein Classification

universal stress protein( domain architecture ID 10001747)

universal stress protein (USP) enhances the rate of cell survival during prolonged exposure to stress agents

CATH:  3.40.50.620
Gene Ontology:  GO:0042802
PubMed:  23745136|9405142|12732303
SCOP:  8083864

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UspA COG0589
Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];
23-164 7.75e-30

Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];


:

Pssm-ID: 440354  Cd Length: 136  Bit Score: 105.77  E-value: 7.75e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750  23 IKHILVPFDESQMSYRAFEFALDLAKKYNAKISIITVmfsgvmsrsFIDMTSHQKVIENDKMKQISHSSKLLQDIAKRF- 101
Cdd:COG0589     2 YKRILVPTDGSEEAERALEYAAELAKALGAELHLLHV---------VDPPPSAAAGPEELEEELREEAEEALEEAAERLe 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2410727750 102 --GVEAKFEVKiSNNVSDTILSFSSHQRVGLIVMGTRARNSPNRFLIGSVAIDVIQKAVCPVILV 164
Cdd:COG0589    73 eaGVEVETVVR-EGDPAEAILEAAEELDADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 136
 
Name Accession Description Interval E-value
UspA COG0589
Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];
23-164 7.75e-30

Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];


Pssm-ID: 440354  Cd Length: 136  Bit Score: 105.77  E-value: 7.75e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750  23 IKHILVPFDESQMSYRAFEFALDLAKKYNAKISIITVmfsgvmsrsFIDMTSHQKVIENDKMKQISHSSKLLQDIAKRF- 101
Cdd:COG0589     2 YKRILVPTDGSEEAERALEYAAELAKALGAELHLLHV---------VDPPPSAAAGPEELEEELREEAEEALEEAAERLe 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2410727750 102 --GVEAKFEVKiSNNVSDTILSFSSHQRVGLIVMGTRARNSPNRFLIGSVAIDVIQKAVCPVILV 164
Cdd:COG0589    73 eaGVEVETVVR-EGDPAEAILEAAEELDADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 136
USP-like cd00293
universal stress protein (USP) and similar proteins; The universal stress protein (USP) is a ...
 25-164 5.14e-24

universal stress protein (USP) and similar proteins; The universal stress protein (USP) is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. USP enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, although USP lacks ATP-binding activity.


Pssm-ID: 467483 [Multi-domain]  Cd Length: 135  Bit Score: 90.87  E-value: 5.14e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750  25 HILVPFDESQMSYRAFEFALDLAKKYNAKISIITVMFSGVMSRSFIDMTSHQKVIENdkmkqisHSSKLLQDIAKRF--- 101
Cdd:cd00293     1 KILVAVDGSEESERALEWALELAKRPGAELTLLHVVDPPPSSSLSGGLEELADELKE-------EAEELLEEAKKLAeea 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2410727750 102 GVEAKFEVKISNnVSDTILSFSSHQRVGLIVMGTRARNSPNRFLIGSVAIDVIQKAVCPVILV 164
Cdd:cd00293    74 GVEVETIVVEGD-PAEAILEEAKELGADLIVMGSRGRSGLKRLLLGSVSEYVLRHAPCPVLVV 135
Usp pfam00582
Universal stress protein family; The universal stress protein UspA is a small cytoplasmic ...
 26-165 6.38e-24

Universal stress protein family; The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.


Pssm-ID: 425765 [Multi-domain]  Cd Length: 137  Bit Score: 90.54  E-value: 6.38e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750  26 ILVPFDESQMSYRAFEFALDLAKKYNAKISIITVMFSGVMSRSFIDMTSHQKVIENDKMKQIShssKLLQDIAKRFGVEA 105
Cdd:pfam00582   1 ILVAVDGSEESKRALEWAAELAKARGAELILLHVIDPPPSGAASLADESAEEEELELELAEAE---ALAAAAAAEAGGVK 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750 106 KFEVKISNNVSDTILSFSSHQRVGLIVMGTRARNSPNRFLIGSVAIDVIQKAVCPVILVK 165
Cdd:pfam00582  78 VEVVVVVGDPAEEILEVAEEEDADLIVMGSRGRSGLSRLLLGSVAEYVLRHAPCPVLVVR 137
PRK15118 PRK15118
universal stress protein UspA;
24-91 2.58e-03

universal stress protein UspA;


Pssm-ID: 185073  Cd Length: 144  Bit Score: 36.40  E-value: 2.58e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2410727750  24 KHILVPFDESQMSYRAFEFALDLAKKYNAKISIITV------MFSGVMSRSFIDMTSHQKVIENDKMKQISHSS 91
Cdd:PRK15118    4 KHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVdvnysdLYTGLIDVNLGDMQKRISEETHHALTELSTNA 77
 
Name Accession Description Interval E-value
UspA COG0589
Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];
23-164 7.75e-30

Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];


Pssm-ID: 440354  Cd Length: 136  Bit Score: 105.77  E-value: 7.75e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750  23 IKHILVPFDESQMSYRAFEFALDLAKKYNAKISIITVmfsgvmsrsFIDMTSHQKVIENDKMKQISHSSKLLQDIAKRF- 101
Cdd:COG0589     2 YKRILVPTDGSEEAERALEYAAELAKALGAELHLLHV---------VDPPPSAAAGPEELEEELREEAEEALEEAAERLe 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2410727750 102 --GVEAKFEVKiSNNVSDTILSFSSHQRVGLIVMGTRARNSPNRFLIGSVAIDVIQKAVCPVILV 164
Cdd:COG0589    73 eaGVEVETVVR-EGDPAEAILEAAEELDADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 136
USP-like cd00293
universal stress protein (USP) and similar proteins; The universal stress protein (USP) is a ...
 25-164 5.14e-24

universal stress protein (USP) and similar proteins; The universal stress protein (USP) is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. USP enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, although USP lacks ATP-binding activity.


Pssm-ID: 467483 [Multi-domain]  Cd Length: 135  Bit Score: 90.87  E-value: 5.14e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750  25 HILVPFDESQMSYRAFEFALDLAKKYNAKISIITVMFSGVMSRSFIDMTSHQKVIENdkmkqisHSSKLLQDIAKRF--- 101
Cdd:cd00293     1 KILVAVDGSEESERALEWALELAKRPGAELTLLHVVDPPPSSSLSGGLEELADELKE-------EAEELLEEAKKLAeea 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2410727750 102 GVEAKFEVKISNnVSDTILSFSSHQRVGLIVMGTRARNSPNRFLIGSVAIDVIQKAVCPVILV 164
Cdd:cd00293    74 GVEVETIVVEGD-PAEAILEEAKELGADLIVMGSRGRSGLKRLLLGSVSEYVLRHAPCPVLVV 135
Usp pfam00582
Universal stress protein family; The universal stress protein UspA is a small cytoplasmic ...
 26-165 6.38e-24

Universal stress protein family; The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.


Pssm-ID: 425765 [Multi-domain]  Cd Length: 137  Bit Score: 90.54  E-value: 6.38e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750  26 ILVPFDESQMSYRAFEFALDLAKKYNAKISIITVMFSGVMSRSFIDMTSHQKVIENDKMKQIShssKLLQDIAKRFGVEA 105
Cdd:pfam00582   1 ILVAVDGSEESKRALEWAAELAKARGAELILLHVIDPPPSGAASLADESAEEEELELELAEAE---ALAAAAAAEAGGVK 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750 106 KFEVKISNNVSDTILSFSSHQRVGLIVMGTRARNSPNRFLIGSVAIDVIQKAVCPVILVK 165
Cdd:pfam00582  78 VEVVVVVGDPAEEILEVAEEEDADLIVMGSRGRSGLSRLLLGSVAEYVLRHAPCPVLVVR 137
USP_At3g01520-like cd23659
universal stress protein At3g01520 and similar proteins; This subfamily includes plant and ...
 24-165 4.38e-16

universal stress protein At3g01520 and similar proteins; This subfamily includes plant and fungal proteins of unknown function, including Arabidopsis thaliana At3g01520. A. thaliana contains 44 USP domain-containing proteins; the USP domain is found either in a small protein with unknown physiological function or as an N-terminal portion of a multi-domain protein, usually a protein kinase. The gene At3g01520 of Arabidopsis thaliana encodes a 175-residue universal stress protein (USP)-like protein which is widely found in the genomes of bacteria, as well as fungi, protozoa, and plants. The bound AMP and conservation of residues in the ATP-binding loop suggest that the protein At3g01520 belongs to the ATP-binding USP subfamily. Universal stress proteins (USPs) are small cytoplasmic bacterial proteins whose expression is enhanced when the cell is exposed to stress agents. USP enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.


Pssm-ID: 467505  Cd Length: 143  Bit Score: 70.73  E-value: 4.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750  24 KHILVPFDESQMSYRAFEFALDLAKKYNAKISIITVMFSGVMSRSFIDMTSHQKVIENDKMKQISHssKLLQDIAKRFGV 103
Cdd:cd23659     1 RKVLIAVDGSEESEYALEWALENLHRPGDEVVLLHVIEPPSLPAASLGSGSEEWEALEEEAREKAE--KLLEKYEKKLKE 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2410727750 104 EAKFEVKI---SNNVSDTILSFSSHQRVGLIVMGTRARNSPNRFLIGSVAIDVIQKAVCPVILVK 165
Cdd:cd23659    79 EKGIKVKVevvAGDPGEVICKAAEELKADLIVMGSRGLGALKRTLLGSVSDYVVHHSPCPVLVVR 143
USP-A-like cd23657
universal stress protein A and similar proteins; The universal stress protein UspA is a small ...
 24-165 2.26e-05

universal stress protein A and similar proteins; The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced several-fold when cellular viability is challenged with heat shock, nutrient starvation, stress agents which arrest cell growth, or DNA-damaging agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, suggesting that it asserts a general "stress endurance" activity. In general, these proteins form dimers and have domains for nucleotide binding activity. The crystal structure of Haemophilus influenzae UspA reveals an asymmetric dimer with a tertiary alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, but unlike MJ0577, it lacks ATP-binding activity.


Pssm-ID: 467504  Cd Length: 138  Bit Score: 41.91  E-value: 2.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750  24 KHILVPFDESQMSYRAFEFALDLAKKYNAKISIITV-----MFSGVMSRSFIDMTSHqkviendkmKQISHSSKLLQDIA 98
Cdd:cd23657     2 KHILVAVDLSPESQSLVDKAVEIARENDAKLSLIHVdedisEYYTGLIDVDIAALQD---------LESTMLEEALKNLS 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2410727750  99 KRFGVEAKFEVKISNNVSDTILSFSSHQRVGLIVMGTRARNSPNRflIGSVAIDVIQKAVCPVILVK 165
Cdd:cd23657    73 ELAGYPVDHTFIGYGDLKEEILEVAKKHNVDLIVCGHHGDFGLSL--LGSSARAVLNSAPCDVLIVP 137
USP_Rv2623_repeat1 cd23944
universal stress protein Rv2623 and similar proteins, USP repeat 1; Mycobacterium tuberculosis ...
 26-164 1.85e-04

universal stress protein Rv2623 and similar proteins, USP repeat 1; Mycobacterium tuberculosis universal stress protein Rv2623 regulates mycobacterial growth in vitro and in vivo and is required for the entry of the tubercle bacillus into the chronic phase of infection in the host. In addition Rv2623 binds ATP and the growth-regulatory attribute of this USP is dependent on its ATP-binding activity. Rv2623 is thought to function as an ATP-dependent signaling intermediate in a pathway that promotes persistent infection. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, although Usp lacks ATP-binding activity.


Pssm-ID: 467509  Cd Length: 140  Bit Score: 39.31  E-value: 1.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750  26 ILVPFDESQMSYRAFEFALDLAKKYNAKISIITVM----FSGVMSRSFIDMTSHQKvienDKMKQISHSSkllQDIAKRF 101
Cdd:cd23944     2 IIVGVDGSPASDAAVRWAAREAQLRQIPLTLVHVVppvvVSWPEGPRPAEVLDWQQ----DEARQVIEQA---RKVAEEA 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2410727750 102 GVEAKfEVKISN-----NVSDTILSFSshQRVGLIVMGTRARNSPNRFLIGSVAIDVIQKAVCPVILV 164
Cdd:cd23944    75 SGEGP-PVKVETeivpgSPVPTLVEAS--RDATMVVVGSRGIGALAGLLLGSVSTSLVRHAHCPVAVI 139
USP_KdpD-like cd01987
USP domain of the osmosensitive K+ channel histidine kinase family; The KdpDE two component ...
 25-150 2.24e-04

USP domain of the osmosensitive K+ channel histidine kinase family; The KdpDE two component system is widespread in bacteria and archaea; it controls potassium homeostasis and virulence by regulating the transcription of multiple genes, including a kdpFABC operon, which encodes a high-affinity P-type ATPase transporter. The KdpD histidine kinase (HK, EC:2.7.13.3) contain an N-terminal sensory cytoplasmic region (NTR) composed of KdpD' and universal stress protein (USP) domains, a canonical transmembrane domain, and a cytoplasmic C-terminal region with a transmitter GAF domain and an EnvZ-like catalytic HK domain. Proteins containing the USP domain are induced by many environmental stressors such as nutrient starvation, drought, extreme temperatures, high salinity, and the presence of uncouplers, antibiotics, and metals. It enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.


Pssm-ID: 467491 [Multi-domain]  Cd Length: 124  Bit Score: 38.77  E-value: 2.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750  25 HILVPFDESQMSYRAFEFALDLAKKYNAKISIITVMfsgVMSRSFIDMTSHQKVIENdkmkqishsskllQDIAKRFGve 104
Cdd:cd01987     1 RILVCISSSPTSEKLIRRAARLAERLNGELTAVYVE---TPEESRLDEESQRRLLTN-------------LKLAEELG-- 62

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2410727750 105 AKFEVKISNNVSDTILSFSSHQRVGLIVMGTRARNSPNRFLIGSVA 150
Cdd:cd01987    63 AEVVSVEGDDVAEAIVEFARERNVTQIVLGQSRRRRWRRLFKGSLV 108
USP-E_repeat2 cd23660
Universal stress protein E, repeat 2; UspE is a tandem-type USP that consists of two USP ...
 117-165 1.00e-03

Universal stress protein E, repeat 2; UspE is a tandem-type USP that consists of two USP domains. The UspE expression levels of Escherichia coli become elevated in response to oxidative stress and DNA damaging agents, including exposure to mitomycin C, cadmium, and hydrogen peroxide. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.


Pssm-ID: 467506  Cd Length: 148  Bit Score: 37.63  E-value: 1.00e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2410727750 117 DTILSFSSHQRVGLIVMGTRARNSPNRFLIGSVAIDVIQKAVCPVILVK 165
Cdd:cd23660    99 EVIPDFAEELDADIVVLGTVARTGLSGALIGNTAEHVLDHLNCDLLALK 147
PRK15118 PRK15118
universal stress protein UspA;
24-91 2.58e-03

universal stress protein UspA;


Pssm-ID: 185073  Cd Length: 144  Bit Score: 36.40  E-value: 2.58e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2410727750  24 KHILVPFDESQMSYRAFEFALDLAKKYNAKISIITV------MFSGVMSRSFIDMTSHQKVIENDKMKQISHSS 91
Cdd:PRK15118    4 KHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVdvnysdLYTGLIDVNLGDMQKRISEETHHALTELSTNA 77
USP_Rv2623_repeat2 cd23661
universal stress protein Rv2623 and similar proteins, USP repeat 2; Mycobacterium tuberculosis ...
 126-165 3.91e-03

universal stress protein Rv2623 and similar proteins, USP repeat 2; Mycobacterium tuberculosis universal stress protein Rv2623 regulates mycobacterial growth in vitro and in vivo and is required for the entry of the tubercle bacillus into the chronic phase of infection in the host. In addition, Rv2623 binds ATP and the growth-regulatory attribute of this USP is dependent on its ATP-binding activity. Rv2623 is thought to function as an ATP-dependent signaling intermediate in a pathway that promotes persistent infection. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, although Usp lacks ATP-binding activity.


Pssm-ID: 467507 [Multi-domain]  Cd Length: 133  Bit Score: 35.56  E-value: 3.91e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2410727750 126 QRVGLIVMGTRARNSPNRFLIGSVAIDVIQKAVCPVILVK 165
Cdd:cd23661    94 ERAQLVVVGSHGRGGFAGMLLGSVSRAVLHSAPCPVIVVR 133
PRK11175 PRK11175
universal stress protein UspE; Provisional
 24-165 4.31e-03

universal stress protein UspE; Provisional


Pssm-ID: 236871 [Multi-domain]  Cd Length: 305  Bit Score: 36.39  E-value: 4.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750  24 KHILVPFDESQMSYRAFEFALDLAKKYNAKisiITVMFSgVMSRSFiDMTSHQKVIENDKMKQ--ISHSSKLLQDIAKRF 101
Cdd:PRK11175    4 QNILVVIDPNQDDQPALRRAVYLAQRNGGK---ITAFLP-IYDFSY-EMTTLLSPDEREAMRQgvISQRTAWIREQAKPY 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2410727750 102 ---GVEAKFEVKISNNVSDTILSFSSHQRVGLIVMGTRARNSpnrflIGSV---AID--VIQKAVCPVILVK 165
Cdd:PRK11175   79 ldaGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDK-----LESViftPTDwhLLRKCPCPVLMVK 145
PRK15005 PRK15005
universal stress protein UspF;
24-165 8.96e-03

universal stress protein UspF;


Pssm-ID: 184967 [Multi-domain]  Cd Length: 144  Bit Score: 34.78  E-value: 8.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410727750  24 KHILVPFD--ESQMSYRAFEFALDLAKKYNAKISIITVMFSgVMSRSFIDMTSHQKVIENDKMKQISHSSklLQDIAKRF 101
Cdd:PRK15005    3 RTILVPIDisDSELTQRVISHVEAEAKIDDAEVHFLTVIPS-LPYYASLGLAYSAELPAMDDLKAEAKSQ--LEEIIKKF 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2410727750 102 GV-EAKFEVKI-SNNVSDTILSFSSHQRVGLIVMGTRaRNSPNRFLIGSVAIDVIQKAVCPVILVK 165
Cdd:PRK15005   80 KLpTDRVHVHVeEGSPKDRILELAKKIPADMIIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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