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Conserved domains on  [gi|2410729374|ref|WP_268541816|]
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type II/IV secretion system ATPase subunit [Candidatus Nitrosotenuis cloacae]

Protein Classification

type II/IV secretion system ATPase subunit( domain architecture ID 10001901)

type II/IV secretion system ATPase subunit forms a hexameric ring and undergoes conformational changes upon ATP hydrolysis that drive a secretion or assembly process by a universal mechanism

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VirB11 COG0630
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ...
 33-470 3.29e-165

Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 440395 [Multi-domain]  Cd Length: 462  Bit Score: 477.65  E-value: 3.29e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374  33 RGNPLPLFTEQLQAEHKKLKEPNLLYPVSDQTYVHINPHTTSDDGYMEYVIVEPDMPDRKIMDLADKMFAVQSADFAPPA 112
Cdd:COG0630    23 REELDRKLLEELREEEVPEANFREPVLVVPEFLLGYEEEEVSYVVEYPYLVVIDDEEIEEYLYYLVEEPPDSEEEEELLE 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 113 EITERFNMVENYLKDHIQLTDDVVDYSSLGDVYKLKTLPVNKKDWVGLRYHFLQKRAGTGILDPFLADSNLEDISIIGAG 192
Cdd:COG0630   103 EEERLLEELLLLEEEDALEDLEVLLLRELDSLLKDYKIKVSEERLEKLLYYLLRDFVGYGKLDPLMRDPNIEDISCNGVG 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 193 -NVYIIHKSFGALKCPL-FLGVEEIDELIISMSEQFGKTISHARPVVDAVLPDGSRINIVFGKDISRKGTNATIRKFAST 270
Cdd:COG0630   183 iPVYVYHRDYERIPTNIvFESEEELDNFVVKLAQRSGKHISVARPIVDATLPDGSRIALTLGPEVSRRGSSFTIRKFREV 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 271 PLSITQVLSSKALDFREAAYMWMMLAEGMSVFINGETASGKTTTLMALTAFIPSNWKIVTIEDTPELTLPHSNWITEQTR 350
Cdd:COG0630   263 PLTPIDLIEWGTLSPELAAYLWLLLENGKSVLVAGGTASGKTTLLNALLSFIPPDAKIVTIEDTRELNLPHENWISLVTR 342

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 351 DTGN-EHSSVTMFDLLKAALRQRPNYIFVGEIRGAEANIAFQAMQTGHPVVSTFHAANMTALIQRITNPPMLIPKTNVEN 429
Cdd:COG0630   343 ESFGgEEGDVTMFDLLKAALRQRPDYIVVGEVRGEEAYTLFQAMATGHGVLSTFHADSVESAINRLTSPPINVPRTLLQA 422

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 2410729374 430 LNIGLFQGAVQGpGGKRVRRVLSINEILGYNPEGGNIMFIP 470
Cdd:COG0630   423 LDLVVFQKRVRV-GGKRVRRVTSIVEIVGYDPETGEIRTNP 462
 
Name Accession Description Interval E-value
VirB11 COG0630
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ...
 33-470 3.29e-165

Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440395 [Multi-domain]  Cd Length: 462  Bit Score: 477.65  E-value: 3.29e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374  33 RGNPLPLFTEQLQAEHKKLKEPNLLYPVSDQTYVHINPHTTSDDGYMEYVIVEPDMPDRKIMDLADKMFAVQSADFAPPA 112
Cdd:COG0630    23 REELDRKLLEELREEEVPEANFREPVLVVPEFLLGYEEEEVSYVVEYPYLVVIDDEEIEEYLYYLVEEPPDSEEEEELLE 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 113 EITERFNMVENYLKDHIQLTDDVVDYSSLGDVYKLKTLPVNKKDWVGLRYHFLQKRAGTGILDPFLADSNLEDISIIGAG 192
Cdd:COG0630   103 EEERLLEELLLLEEEDALEDLEVLLLRELDSLLKDYKIKVSEERLEKLLYYLLRDFVGYGKLDPLMRDPNIEDISCNGVG 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 193 -NVYIIHKSFGALKCPL-FLGVEEIDELIISMSEQFGKTISHARPVVDAVLPDGSRINIVFGKDISRKGTNATIRKFAST 270
Cdd:COG0630   183 iPVYVYHRDYERIPTNIvFESEEELDNFVVKLAQRSGKHISVARPIVDATLPDGSRIALTLGPEVSRRGSSFTIRKFREV 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 271 PLSITQVLSSKALDFREAAYMWMMLAEGMSVFINGETASGKTTTLMALTAFIPSNWKIVTIEDTPELTLPHSNWITEQTR 350
Cdd:COG0630   263 PLTPIDLIEWGTLSPELAAYLWLLLENGKSVLVAGGTASGKTTLLNALLSFIPPDAKIVTIEDTRELNLPHENWISLVTR 342

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 351 DTGN-EHSSVTMFDLLKAALRQRPNYIFVGEIRGAEANIAFQAMQTGHPVVSTFHAANMTALIQRITNPPMLIPKTNVEN 429
Cdd:COG0630   343 ESFGgEEGDVTMFDLLKAALRQRPDYIVVGEVRGEEAYTLFQAMATGHGVLSTFHADSVESAINRLTSPPINVPRTLLQA 422

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 2410729374 430 LNIGLFQGAVQGpGGKRVRRVLSINEILGYNPEGGNIMFIP 470
Cdd:COG0630   423 LDLVVFQKRVRV-GGKRVRRVTSIVEIVGYDPETGEIRTNP 462
VirB11-like_ATPase cd01130
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ...
 288-456 1.09e-56

Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.


Pssm-ID: 410874 [Multi-domain]  Cd Length: 177  Bit Score: 187.75  E-value: 1.09e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 288 AAYMWMMLAEGMSVFINGETASGKTTTLMALTAFIPSNWKIVTIEDTPELTLPHSNWITEQTRDTGNEHSSVTMFDLLKA 367
Cdd:cd01130     2 AAFLRLAVRARKNILISGGTGSGKTTLLNALLSFIPPDERIVTIEDTRELQLPHPNVVHLLTRPGGGEKGEVTMADLLKA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 368 ALRQRPNYIFVGEIRGAEANIAFQAMQTGHP-VVSTFHAANMTALIQRITNPPML---------IPKTNVENLNIGLFQG 437
Cdd:cd01130    82 ALRMRPDRIIVGEVRGGEAYDMLQAMNTGHPgSITTIHANSAEDAIDRLATLVLEagvnldeeaLRRLIASAIDVIVHVK 161

                         170
                  ....*....|....*....
gi 2410729374 438 AVqgpgGKRVRRVLSINEI 456
Cdd:cd01130   162 RL----GDGVRRVTEIYEV 176
VirB11 TIGR02788
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ...
 177-417 1.47e-37

P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.


Pssm-ID: 274301  Cd Length: 308  Bit Score: 140.95  E-value: 1.47e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 177 FLADSNLEDISIIGAGNVYI-IHKSFGALKCPL--FLGVEEIDELIISMSEQfgkTISHARPVVDAVLPDGSRINIVFGK 253
Cdd:TIGR02788   1 FLDDEDVTEICINRPGEVWVeGPGGWQRFDVPDltFSHLMRLARAIASFSKQ---SISEENPILSATLPGGERVQIVIPP 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 254 dISRKGTNA-TIRKFASTPLSITQ-----------VLSSKALDFREAA-----------YMWMMLAEGMSVFINGETASG 310
Cdd:TIGR02788  78 -ACENDTVSiTIRKPSLVDFSLDDyeekgffdtvrAQSGTLSDNDEQLlelldagdikeFLRLAIASRKNIIISGGTGSG 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 311 KTTTLMALTAFIPSNWKIVTIEDTPELTLPHSNWITEQTRDTGNEHSSVTMFDLLKAALRQRPNYIFVGEIRGAEANIAF 390
Cdd:TIGR02788 157 KTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIILGELRGDEAFDFI 236

                         250       260
                  ....*....|....*....|....*...
gi 2410729374 391 QAMQTGHP-VVSTFHAANMTALIQRITN 417
Cdd:TIGR02788 237 RAVNTGHPgSITTLHAGSPEEAFEQLAL 264
T2SSE pfam00437
Type II/IV secretion system protein; This family contains components of both the Type II ...
 170-429 2.85e-34

Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.


Pssm-ID: 425681 [Multi-domain]  Cd Length: 269  Bit Score: 130.48  E-value: 2.85e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 170 GTGILDPFLADSNleDISIIGAGNVYIIH-KSFGALKCPLFLGVEE---IDELIISMSEQfgkTISHARPVVDAVLP--- 242
Cdd:pfam00437   1 NLIPLEALDEGAS--DIHVEPPERIVWIRfRVDGVLREIPFPDADAlarLISRIKVMARL---DISERRPPQDGRLPlri 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 243 --DGSRINIVFGKdiSRKGTNATIR--KFASTPLSITQVLSSKALD--FREAaymwMMLAEGMsVFINGETASGKTTTLM 316
Cdd:pfam00437  76 ggKGVRVRVSTLP--TAGGEKLVIRllDPSNVALSLDELGMTGAQDeaLLEF----LRQPRGN-ILVTGPTGSGKTTTLY 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 317 ALTAFIPSNW-KIVTIEDTPELTLPHSNwiteQTRdtGNEHSSVTMFDLLKAALRQRPNYIFVGEIRGAE-ANIAFQAMQ 394
Cdd:pfam00437 149 AALGELNTRDeNIVTVEDPVEIQLEGIN----QVQ--LNARAGVTFADLLRAILRQDPDRIMVGEIRDLEtAEIALQAAN 222

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2410729374 395 TGHPVVSTFHAANMTALIQRITNppMLIPKTNVEN 429
Cdd:pfam00437 223 TGHLVLSTLHTNSAAGALTRLQD--MGVPPFELAS 255
PRK13900 PRK13900
type IV secretion system ATPase VirB11; Provisional
 174-457 7.69e-23

type IV secretion system ATPase VirB11; Provisional


Pssm-ID: 184381  Cd Length: 332  Bit Score: 99.83  E-value: 7.69e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 174 LDPF---LADSNLEDISIIGAGNVYIIHKsfGALKCplflgvEEIDELIISMSEQFGKTISHA--------RPVVDAVLP 242
Cdd:PRK13900   12 LEPLkniFAEDGVNEISINKPGEVWVEKK--GDIRC------EQIPELDLSHLKALGRLVAQAteqkiseeKPLLSATLP 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 243 DGSRINIVFGKDISRKGTNATIRKFASTPLS-------------ITQVLSS-------------KALDFREAAYMwmmla 296
Cdd:PRK13900   84 NGYRIQIVFPPACEIGQIVYSIRKPSGMQLTlddyekmgafdetATESLVDeddvilnellaekKIKEFLEHAVI----- 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 297 EGMSVFINGETASGKTT-TLMALTAfIPSNWKIVTIEDTPELTLP-HSNWITEQTRDTGNEHSSVTMFDLLKAALRQRPN 374
Cdd:PRK13900  159 SKKNIIISGGTSTGKTTfTNAALRE-IPAIERLITVEDAREIVLSnHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 375 YIFVGEIRGAEANIAFQAMQTGHP-VVSTFHAANMTALIQRIT---------NPPMLIPK--TNVENLNIGLFQGAvqgp 442
Cdd:PRK13900  238 RIIVGELRGAEAFSFLRAINTGHPgSISTLHADSPAMAIEQLKlmvmqaglgMPPDQIKKyiLNVVDIVVQLKRGS---- 313

                         330
                  ....*....|....*
gi 2410729374 443 GGKRvrrvlSINEIL 457
Cdd:PRK13900  314 GGKR-----YVSEIY 323
ATPase_ComGA NF041000
competence type IV pilus ATPase ComGA;
292-414 8.23e-21

competence type IV pilus ATPase ComGA;


Pssm-ID: 468930 [Multi-domain]  Cd Length: 265  Bit Score: 92.13  E-value: 8.23e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 292 WMMLAEGMSVFiNGETASGKTTTLMALTAFIPSNWKIVTIEDTPELTLPhsNWITEQTrdtgNEHSSVTMFDLLKAALRQ 371
Cdd:NF041000  123 LLQRRSGLILF-SGPTGSGKTTTMYSLARKLALNKQVITIEDPVEIKEP--NFLQLQV----NEKAGMTYDTLLKAALRH 195

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2410729374 372 RPNYIFVGEIRGAE-ANIAFQAMQTGHPVVSTFHAANMTALIQR 414
Cdd:NF041000  196 RPDILIIGEIRDAEtAKAAIRAALTGHLVLSTVHAKSAAGVIYR 239
 
Name Accession Description Interval E-value
VirB11 COG0630
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ...
 33-470 3.29e-165

Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440395 [Multi-domain]  Cd Length: 462  Bit Score: 477.65  E-value: 3.29e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374  33 RGNPLPLFTEQLQAEHKKLKEPNLLYPVSDQTYVHINPHTTSDDGYMEYVIVEPDMPDRKIMDLADKMFAVQSADFAPPA 112
Cdd:COG0630    23 REELDRKLLEELREEEVPEANFREPVLVVPEFLLGYEEEEVSYVVEYPYLVVIDDEEIEEYLYYLVEEPPDSEEEEELLE 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 113 EITERFNMVENYLKDHIQLTDDVVDYSSLGDVYKLKTLPVNKKDWVGLRYHFLQKRAGTGILDPFLADSNLEDISIIGAG 192
Cdd:COG0630   103 EEERLLEELLLLEEEDALEDLEVLLLRELDSLLKDYKIKVSEERLEKLLYYLLRDFVGYGKLDPLMRDPNIEDISCNGVG 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 193 -NVYIIHKSFGALKCPL-FLGVEEIDELIISMSEQFGKTISHARPVVDAVLPDGSRINIVFGKDISRKGTNATIRKFAST 270
Cdd:COG0630   183 iPVYVYHRDYERIPTNIvFESEEELDNFVVKLAQRSGKHISVARPIVDATLPDGSRIALTLGPEVSRRGSSFTIRKFREV 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 271 PLSITQVLSSKALDFREAAYMWMMLAEGMSVFINGETASGKTTTLMALTAFIPSNWKIVTIEDTPELTLPHSNWITEQTR 350
Cdd:COG0630   263 PLTPIDLIEWGTLSPELAAYLWLLLENGKSVLVAGGTASGKTTLLNALLSFIPPDAKIVTIEDTRELNLPHENWISLVTR 342

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 351 DTGN-EHSSVTMFDLLKAALRQRPNYIFVGEIRGAEANIAFQAMQTGHPVVSTFHAANMTALIQRITNPPMLIPKTNVEN 429
Cdd:COG0630   343 ESFGgEEGDVTMFDLLKAALRQRPDYIVVGEVRGEEAYTLFQAMATGHGVLSTFHADSVESAINRLTSPPINVPRTLLQA 422

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 2410729374 430 LNIGLFQGAVQGpGGKRVRRVLSINEILGYNPEGGNIMFIP 470
Cdd:COG0630   423 LDLVVFQKRVRV-GGKRVRRVTSIVEIVGYDPETGEIRTNP 462
CpaF COG4962
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ...
 169-501 1.46e-72

Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443988 [Multi-domain]  Cd Length: 386  Bit Score: 236.60  E-value: 1.46e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 169 AGTGILDPFLADSNLEDISIIGAGNVYIIHKSfGALKCPL-FLGVEEIDELIISMSEQFGKTISHARPVVDAVLPDGSRI 247
Cdd:COG4962    54 FGLGPLEPLLDDPDVTDIMVNGPDEVFVERGG-RLERTDVrFDSEEELRRLIERIAARVGRRLDESSPIVDARLPDGSRV 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 248 NIVFGkDISRKGTNATIRKFASTPLSITQVLSSKALDFREAAYMWMMLAEGMSVFINGETASGKTTTLMALTAFIPSNWK 327
Cdd:COG4962   133 NAVIP-PVARDGPSLSIRKFRKRPLTLEDLVALGSLTPEMAEFLRAAVRARLNILVSGGTGSGKTTLLNALSGFIPPDER 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 328 IVTIEDTPELTLPHSNWITEQTRDTGNE-HSSVTMFDLLKAALRQRPNYIFVGEIRGAEANIAFQAMQTGHP-VVSTFHA 405
Cdd:COG4962   212 IVTIEDAAELQLQHPHVVRLETRPPNVEgAGEVTLRDLVRNALRMRPDRIIVGEVRGAEALDMLQAMNTGHDgSMSTLHA 291

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 406 ANMTALIQRITNPPML----IPKTNVE-----NLNIGLFQGavQGPGGKrvRRVLSINEILGYnpEGGNIMFIPVFNWDP 476
Cdd:COG4962   292 NSARDALARLETLALMagenLPREAVRrqiasAIDLVVHLE--RLRDGR--RRVTEIAEVTGM--EGGRVVLQPIFRFDP 365

                         330       340
                  ....*....|....*....|....*
gi 2410729374 477 GTDEvkfRGKGSSALFVQKvLEKRG 501
Cdd:COG4962   366 GGLD---AAGGVRPRFLER-LEAAG 386
VirB11-like_ATPase cd01130
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ...
 288-456 1.09e-56

Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.


Pssm-ID: 410874 [Multi-domain]  Cd Length: 177  Bit Score: 187.75  E-value: 1.09e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 288 AAYMWMMLAEGMSVFINGETASGKTTTLMALTAFIPSNWKIVTIEDTPELTLPHSNWITEQTRDTGNEHSSVTMFDLLKA 367
Cdd:cd01130     2 AAFLRLAVRARKNILISGGTGSGKTTLLNALLSFIPPDERIVTIEDTRELQLPHPNVVHLLTRPGGGEKGEVTMADLLKA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 368 ALRQRPNYIFVGEIRGAEANIAFQAMQTGHP-VVSTFHAANMTALIQRITNPPML---------IPKTNVENLNIGLFQG 437
Cdd:cd01130    82 ALRMRPDRIIVGEVRGGEAYDMLQAMNTGHPgSITTIHANSAEDAIDRLATLVLEagvnldeeaLRRLIASAIDVIVHVK 161

                         170
                  ....*....|....*....
gi 2410729374 438 AVqgpgGKRVRRVLSINEI 456
Cdd:cd01130   162 RL----GDGVRRVTEIYEV 176
VirB11 TIGR02788
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ...
 177-417 1.47e-37

P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.


Pssm-ID: 274301  Cd Length: 308  Bit Score: 140.95  E-value: 1.47e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 177 FLADSNLEDISIIGAGNVYI-IHKSFGALKCPL--FLGVEEIDELIISMSEQfgkTISHARPVVDAVLPDGSRINIVFGK 253
Cdd:TIGR02788   1 FLDDEDVTEICINRPGEVWVeGPGGWQRFDVPDltFSHLMRLARAIASFSKQ---SISEENPILSATLPGGERVQIVIPP 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 254 dISRKGTNA-TIRKFASTPLSITQ-----------VLSSKALDFREAA-----------YMWMMLAEGMSVFINGETASG 310
Cdd:TIGR02788  78 -ACENDTVSiTIRKPSLVDFSLDDyeekgffdtvrAQSGTLSDNDEQLlelldagdikeFLRLAIASRKNIIISGGTGSG 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 311 KTTTLMALTAFIPSNWKIVTIEDTPELTLPHSNWITEQTRDTGNEHSSVTMFDLLKAALRQRPNYIFVGEIRGAEANIAF 390
Cdd:TIGR02788 157 KTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIILGELRGDEAFDFI 236

                         250       260
                  ....*....|....*....|....*...
gi 2410729374 391 QAMQTGHP-VVSTFHAANMTALIQRITN 417
Cdd:TIGR02788 237 RAVNTGHPgSITTLHAGSPEEAFEQLAL 264
T2SSE pfam00437
Type II/IV secretion system protein; This family contains components of both the Type II ...
 170-429 2.85e-34

Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.


Pssm-ID: 425681 [Multi-domain]  Cd Length: 269  Bit Score: 130.48  E-value: 2.85e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 170 GTGILDPFLADSNleDISIIGAGNVYIIH-KSFGALKCPLFLGVEE---IDELIISMSEQfgkTISHARPVVDAVLP--- 242
Cdd:pfam00437   1 NLIPLEALDEGAS--DIHVEPPERIVWIRfRVDGVLREIPFPDADAlarLISRIKVMARL---DISERRPPQDGRLPlri 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 243 --DGSRINIVFGKdiSRKGTNATIR--KFASTPLSITQVLSSKALD--FREAaymwMMLAEGMsVFINGETASGKTTTLM 316
Cdd:pfam00437  76 ggKGVRVRVSTLP--TAGGEKLVIRllDPSNVALSLDELGMTGAQDeaLLEF----LRQPRGN-ILVTGPTGSGKTTTLY 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 317 ALTAFIPSNW-KIVTIEDTPELTLPHSNwiteQTRdtGNEHSSVTMFDLLKAALRQRPNYIFVGEIRGAE-ANIAFQAMQ 394
Cdd:pfam00437 149 AALGELNTRDeNIVTVEDPVEIQLEGIN----QVQ--LNARAGVTFADLLRAILRQDPDRIMVGEIRDLEtAEIALQAAN 222

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2410729374 395 TGHPVVSTFHAANMTALIQRITNppMLIPKTNVEN 429
Cdd:pfam00437 223 TGHLVLSTLHTNSAAGALTRLQD--MGVPPFELAS 255
PulE-GspE-like cd01129
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ...
 297-414 1.51e-25

PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.


Pssm-ID: 410873 [Multi-domain]  Cd Length: 159  Bit Score: 102.56  E-value: 1.51e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 297 EGMsVFINGETASGKTTTLMALTAFIPS-NWKIVTIEDTPELTLPhsnWITeQTRDtgNEHSSVTMFDLLKAALRQRPNY 375
Cdd:cd01129    11 HGL-ILVTGPTGSGKTTTLYAMLRELNGpERNIITIEDPVEYQIP---GIN-QSQV--NEKIGLTFADALRAILRQDPDI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2410729374 376 IFVGEIRGAE-ANIAFQAMQTGHPVVSTFHAANMTALIQR 414
Cdd:cd01129    84 IMVGEIRDAEtAEIAIRAALTGHLVLSTLHTNDALGAITR 123
PRK13900 PRK13900
type IV secretion system ATPase VirB11; Provisional
 174-457 7.69e-23

type IV secretion system ATPase VirB11; Provisional


Pssm-ID: 184381  Cd Length: 332  Bit Score: 99.83  E-value: 7.69e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 174 LDPF---LADSNLEDISIIGAGNVYIIHKsfGALKCplflgvEEIDELIISMSEQFGKTISHA--------RPVVDAVLP 242
Cdd:PRK13900   12 LEPLkniFAEDGVNEISINKPGEVWVEKK--GDIRC------EQIPELDLSHLKALGRLVAQAteqkiseeKPLLSATLP 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 243 DGSRINIVFGKDISRKGTNATIRKFASTPLS-------------ITQVLSS-------------KALDFREAAYMwmmla 296
Cdd:PRK13900   84 NGYRIQIVFPPACEIGQIVYSIRKPSGMQLTlddyekmgafdetATESLVDeddvilnellaekKIKEFLEHAVI----- 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 297 EGMSVFINGETASGKTT-TLMALTAfIPSNWKIVTIEDTPELTLP-HSNWITEQTRDTGNEHSSVTMFDLLKAALRQRPN 374
Cdd:PRK13900  159 SKKNIIISGGTSTGKTTfTNAALRE-IPAIERLITVEDAREIVLSnHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 375 YIFVGEIRGAEANIAFQAMQTGHP-VVSTFHAANMTALIQRIT---------NPPMLIPK--TNVENLNIGLFQGAvqgp 442
Cdd:PRK13900  238 RIIVGELRGAEAFSFLRAINTGHPgSISTLHADSPAMAIEQLKlmvmqaglgMPPDQIKKyiLNVVDIVVQLKRGS---- 313

                         330
                  ....*....|....*
gi 2410729374 443 GGKRvrrvlSINEIL 457
Cdd:PRK13900  314 GGKR-----YVSEIY 323
PilT COG2805
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ...
 246-415 1.74e-22

Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];


Pssm-ID: 442056  Cd Length: 342  Bit Score: 98.63  E-value: 1.74e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 246 RINIVFgkdiSRKGTNATIRKFASTPLSITQvlsskaLDFREAAYMWMMLAEGMsVFINGETASGKTTTLMALTAFIPSN 325
Cdd:COG2805    84 RVNIFR----QRGGVAAVLRLIPSEIPTLEE------LGLPPVLKELAELPRGL-VLVTGPTGSGKSTTLAAMIDYINET 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 326 W--KIVTIEDTPELTLPHSNWITEQT---RDTgneHSsvtmFDL-LKAALRQRPNYIFVGEIRGAE-ANIAFQAMQTGHP 398
Cdd:COG2805   153 RakHIITIEDPIEFVHKHKKSLINQRevgRDT---PS----FANaLRAALREDPDVILVGEMRDLEtIEAALTAAETGHL 225

                         170
                  ....*....|....*..
gi 2410729374 399 VVSTFHAANMTALIQRI 415
Cdd:COG2805   226 VFATLHTNSAAQTIDRI 242
type_II_IV_secretion_ATPases cd19477
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ...
 294-417 3.11e-22

type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410885 [Multi-domain]  Cd Length: 168  Bit Score: 93.61  E-value: 3.11e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 294 MLAEGMSVFINGETASGKTTTLMALTAFIPSNWKIVTIEDTPELTLPHSNWITeQTRDTGNehssVTMFDLLKAALRQRP 373
Cdd:cd19477     6 GIAIGKNVIVCGGTGSGKTTYIKSILEFIPKEERIISIEDTEEIVFKHHKNYT-QLFFGGN----ITSADCLKSCLRQRP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2410729374 374 NYIFVGEIRGAEANIAFQAMQTGHP-VVSTFHAANMTALIQRITN 417
Cdd:cd19477    81 DRIILGELRSSEAYDFYNVLCSGHKgTLTTLHAGSSEEAFIRLAN 125
ATPase_ComGA NF041000
competence type IV pilus ATPase ComGA;
292-414 8.23e-21

competence type IV pilus ATPase ComGA;


Pssm-ID: 468930 [Multi-domain]  Cd Length: 265  Bit Score: 92.13  E-value: 8.23e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 292 WMMLAEGMSVFiNGETASGKTTTLMALTAFIPSNWKIVTIEDTPELTLPhsNWITEQTrdtgNEHSSVTMFDLLKAALRQ 371
Cdd:NF041000  123 LLQRRSGLILF-SGPTGSGKTTTMYSLARKLALNKQVITIEDPVEIKEP--NFLQLQV----NEKAGMTYDTLLKAALRH 195

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2410729374 372 RPNYIFVGEIRGAE-ANIAFQAMQTGHPVVSTFHAANMTALIQR 414
Cdd:NF041000  196 RPDILIIGEIRDAEtAKAAIRAALTGHLVLSTVHAKSAAGVIYR 239
PRK13894 PRK13894
conjugal transfer ATPase TrbB; Provisional
 227-459 6.10e-20

conjugal transfer ATPase TrbB; Provisional


Pssm-ID: 184377  Cd Length: 319  Bit Score: 90.95  E-value: 6.10e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 227 GKTISHARPVVDAVLP-DGSRinivFGKDISRKGTNAT--IRKFASTPLSITQVLSSKALDFREAAYMWMMLAEGMSVFI 303
Cdd:PRK13894   78 GKEVTRSKPILEGELPlDGSR----FAGQLPPVVPAPTfaIRKKAVAIFTLDQYVERGIMTAAQREAIIAAVRAHRNILV 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 304 NGETASGKTTTLMAL----TAFIPSNwKIVTIEDTPELTLPHSNWIteqtrdtgNEHSS--VTMFDLLKAALRQRPNYIF 377
Cdd:PRK13894  154 IGGTGSGKTTLVNAIinemVIQDPTE-RVFIIEDTGEIQCAAENYV--------QYHTSidVNMTALLKTTLRMRPDRIL 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 378 VGEIRGAEANIAFQAMQTGHP-VVSTFHAANMTALIQRITnppMLI------PKTnVENLnIGLFQGAV----QGPGGKR 446
Cdd:PRK13894  225 VGEVRGPEALDLLMAWNTGHEgGAATLHANNAKAGLDRLK---SLIsmhpdaPKP-IEPL-IGEAVHVVvhiaRTPGGRR 299

                         250
                  ....*....|...
gi 2410729374 447 VRRVLsinEILGY 459
Cdd:PRK13894  300 IQEIL---EVSGY 309
PRK13851 PRK13851
type IV secretion system protein VirB11; Provisional
 176-407 1.55e-19

type IV secretion system protein VirB11; Provisional


Pssm-ID: 172375  Cd Length: 344  Bit Score: 89.96  E-value: 1.55e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 176 PFLADSNLEDISIIGAGNVYIihKSFGA-LKCPLFLGVEEIDELIISMSEQFGKTISHARPVVDAVLPDGSRINIVFGKD 254
Cdd:PRK13851   16 EWLDDPRTEEVAINRPGEAFV--RQAGVfTKFPLPLSYDDLEDIAILAGALRKQDVGPRNPLCATELPGGERLQICLPPT 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 255 ISRKGTNATIRKFASTPLSITQVLS-------------SKALDFREA------------AYMWMMLAEGMSVFINGETAS 309
Cdd:PRK13851   94 VPSGTVSLTIRRPSSRVSELKEVSSrydasrwnqwqerRKRRDQLDEailrhydngdleAFLHACVVGRLTMLLCGPTGS 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 310 GKTTTLMALTAFIPSNWKIVTIEDTPELTLPHSNWITEQTRDTGNEHSSVTMFDLLKAALRQRPNYIFVGEIRGAEANIA 389
Cdd:PRK13851  174 GKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEMRDDAAWAY 253

                         250
                  ....*....|....*....
gi 2410729374 390 FQAMQTGHP-VVSTFHAAN 407
Cdd:PRK13851  254 LSEVVSGHPgSISTIHGAN 272
DotB_TraJ cd19516
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ...
 301-447 1.73e-19

dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.


Pssm-ID: 410924 [Multi-domain]  Cd Length: 179  Bit Score: 86.28  E-value: 1.73e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 301 VFINGETASGKTTTLMALTAFI----PSNWKIVTIEDTPELTLphsnwiTEQTRDTGNEHSS------VTMFDLLKAALR 370
Cdd:cd19516    14 VYVAGATGSGKSTLLAAIYRYIlendPPDRKIITYEDPIEFVY------DGIKSKHSIIVQSqiprhfKSFAKAVREALR 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 371 QRPNYIFVGEIRGAE-ANIAFQAMQTGHPVVSTFHAANMTALIQRITN---PPMLIPKTN--VENLNIGLFQGAVQGPGG 444
Cdd:cd19516    88 RKPSLIGVGELRDQEtISAAVEASLTGHPVYSTVHTKSVAETIRRLISlfpPEERDAAAYdlLSTLRFIIVQRLVRTTDG 167


                  ...
gi 2410729374 445 KRV 447
Cdd:cd19516   168 KRV 170
PRK13833 PRK13833
conjugal transfer protein TrbB; Provisional
 263-453 3.49e-18

conjugal transfer protein TrbB; Provisional


Pssm-ID: 172360 [Multi-domain]  Cd Length: 323  Bit Score: 85.62  E-value: 3.49e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 263 TIRKFASTPLSITQVLSSKALDFREAAYMWMMLAEGMSVFINGETASGKTTTLMALTAFIPSNW---KIVTIEDTPELTL 339
Cdd:PRK13833  109 TIRRRASRLIPLDDYVTSKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASApedRLVILEDTAEIQC 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 340 PHSNWITEQTRDTgnehssVTMFDLLKAALRQRPNYIFVGEIRGAEANIAFQAMQTGHP-VVSTFHAAN-MTAL--IQRI 415
Cdd:PRK13833  189 AAENAVALHTSDT------VDMARLLKSTMRLRPDRIIVGEVRDGAALTLLKAWNTGHPgGVTTIHSNTaMSALrrLEQL 262

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2410729374 416 TNPPMLIPKTNVENLNIGLFQGAVQGPGGKRVRRVLSI 453
Cdd:PRK13833  263 TAEASQQPMQEVIGEAVDLIVSIERTGKGRRVREVIHV 300
PilT cd01131
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ...
 301-419 5.47e-18

Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.


Pssm-ID: 410875 [Multi-domain]  Cd Length: 223  Bit Score: 82.97  E-value: 5.47e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 301 VFINGETASGKTTTLMALTAFIPSNWK--IVTIEDTPELTLPHSNWITEQtRDTGnEHSsVTMFDLLKAALRQRPNYIFV 378
Cdd:cd01131    24 VLVTGPTGSGKSTTLAAMIDYINETRSkhIITIEDPIEFVHKHKKSLINQ-REVG-RDT-ESFAAALRAALREDPDVILV 100

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2410729374 379 GEIRGAE-ANIAFQAMQTGHPVVSTFHAANMTALIQRITN--PP 419
Cdd:cd01131   101 GEMRDLEtIELALTAAETGHLVFSTLHTNSAAQTIDRIIDvfPP 144
PulE COG2804
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ...
 241-405 1.97e-17

Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 442055 [Multi-domain]  Cd Length: 561  Bit Score: 85.63  E-value: 1.97e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 241 LP-DGsRINIVF-GKDI--------SRKGTNATIRKF--ASTPLSITQV-LSSKALD-FREAaymwMMLAEGMsVFINGE 306
Cdd:COG2804   248 LPqDG-RIKLRLgGREIdlrvstlpTVYGEKVVLRILdkSAALLDLEQLgFSPDQLErLRRL----IRRPHGI-ILVTGP 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 307 TASGKTTTLMALTAFIPS-NWKIVTIEDTPELTLPHSNWIteQTrdtgNEHSSVTMFDLLKAALRQRPNYIFVGEIRGAE 385
Cdd:COG2804   322 TGSGKTTTLYAALNELNTpERNIITVEDPVEYQLPGINQV--QV----NPKIGLTFASALRSILRQDPDVIMVGEIRDLE 395

                         170       180
                  ....*....|....*....|.
gi 2410729374 386 -ANIAFQAMQTGHPVVSTFHA 405
Cdd:COG2804   396 tAEIAVQAALTGHLVLSTLHT 416
PRK10436 PRK10436
hypothetical protein; Provisional
 278-404 2.04e-13

hypothetical protein; Provisional


Pssm-ID: 236694  Cd Length: 462  Bit Score: 72.65  E-value: 2.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 278 LSSKAL-DFREAaymwMMLAEGMsVFINGETASGKTTTLM-ALTAFIPSNWKIVTIEDTPELTLPHSNwiteQTRDtgNE 355
Cdd:PRK10436  202 MTPAQLaQFRQA----LQQPQGL-ILVTGPTGSGKTVTLYsALQTLNTAQINICSVEDPVEIPLAGIN----QTQI--HP 270

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2410729374 356 HSSVTMFDLLKAALRQRPNYIFVGEIRGAE-ANIAFQAMQTGHPVVSTFH 404
Cdd:PRK10436  271 KAGLTFQRVLRALLRQDPDVIMVGEIRDGEtAEIAIKAAQTGHLVLSTLH 320
PilU COG5008
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
305-417 1.94e-12

Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];


Pssm-ID: 444032  Cd Length: 370  Bit Score: 68.97  E-value: 1.94e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2410729374 305 GETASGKTTTLMALTAFIPSNWK--IVTIEDTPELTLPHSNWITEQtR----DTGNEHSSvtmfdlLKAALRQRPNYIFV 378
Cdd:COG5008   130 GATGSGKSTTLAAMIDHRNENSSghILTIEDPIEFVHKHKKSIVTQ-RevgvDTESYEVA------LKNALRQAPDVILI 202

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2410729374 379 GEIRGAE---ANIAFqAmQTGHPVVSTFHAANMTALIQRITN 417
Cdd:COG5008   203 GEIRDREtmeHAIAF-A-ETGHLCLATLHANNANQALDRIIN 242
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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