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Conserved domains on  [gi|2416572891|ref|WP_269345915|]
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YciI family protein [Agrobacterium sp. SOY23]

Protein Classification

YciI family protein( domain architecture ID 10006398)

YciI family protein similar to Haemophilus influenzae YciI (HI0828) and Burkholderia phenoliruptrix 5-chlorohydroxyhydroquinone dehydrochlorinase, which is involved in the biodegradation of 2,4,5-trichlorophenoxyacetate

CATH:  3.30.70.1060

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YciI COG2350
YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis ...
 1-83 1.63e-16

YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


:

Pssm-ID: 441917  Cd Length: 93  Bit Score: 67.92  E-value: 1.63e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416572891  1 MFIVLLRFSDN-KPQASHFIDGHNAWIKRGFDSGIFLLAG-TLHPNAGGTLLAHNIDRKSLEALVQEDPFVAERVV-SAE 77
Cdd:COG2350    2 LFAVILTDKPDsLEERDALRPAHLAYLKELYEEGRLLAAGpLLDDDTGGLIIAEADSREEAEALAAADPYVKAGVVaSVE 81


                 ....*.
gi 2416572891 78 IHEVTP 83
Cdd:COG2350   82 VREWKP 87
 
Name Accession Description Interval E-value
YciI COG2350
YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis ...
 1-83 1.63e-16

YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 441917  Cd Length: 93  Bit Score: 67.92  E-value: 1.63e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416572891  1 MFIVLLRFSDN-KPQASHFIDGHNAWIKRGFDSGIFLLAG-TLHPNAGGTLLAHNIDRKSLEALVQEDPFVAERVV-SAE 77
Cdd:COG2350    2 LFAVILTDKPDsLEERDALRPAHLAYLKELYEEGRLLAAGpLLDDDTGGLIIAEADSREEAEALAAADPYVKAGVVaSVE 81


                 ....*.
gi 2416572891 78 IHEVTP 83
Cdd:COG2350   82 VREWKP 87
 
Name Accession Description Interval E-value
YciI COG2350
YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis ...
 1-83 1.63e-16

YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 441917  Cd Length: 93  Bit Score: 67.92  E-value: 1.63e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416572891  1 MFIVLLRFSDN-KPQASHFIDGHNAWIKRGFDSGIFLLAG-TLHPNAGGTLLAHNIDRKSLEALVQEDPFVAERVV-SAE 77
Cdd:COG2350    2 LFAVILTDKPDsLEERDALRPAHLAYLKELYEEGRLLAAGpLLDDDTGGLIIAEADSREEAEALAAADPYVKAGVVaSVE 81


                 ....*.
gi 2416572891 78 IHEVTP 83
Cdd:COG2350   82 VREWKP 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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