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Conserved domains on  [gi|2416572900|ref|WP_269345924|]
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conjugal transfer protein TraC [Agrobacterium sp. SOY23]

Protein Classification

TraC family protein( domain architecture ID 10014438)

TraC family protein similar to TraC, one of the proteins encoded by the transfer (tra) region of the F pilus assembly Type-IV secretion system for plasmid transfer; is required for the assembly of mature F-pilin subunits into extended F pili

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13848 PRK13848
conjugal transfer protein TraC; Provisional
 1-97 2.94e-40

conjugal transfer protein TraC; Provisional


:

Pssm-ID: 172373  Cd Length: 98  Bit Score: 128.36  E-value: 2.94e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416572900  1 MKKPSSKIRDEIARLQEQLKLAETREAERIGRIALKAGLGDIEIDEGELQATFEDVTRRFRESKPASIGKERGG-SVIAS 79
Cdd:PRK13848   1 MKKPSSKIREEIAKLQEQLKQAETREAERIGRIALKAGLGEIEIEEAELQAAFEELAKRFRGGKGAATGKRNGGdGRTAS 80

                         90
                 ....*....|....*...
gi 2416572900 80 QQTAPIPAGADAGGNGEA 97
Cdd:PRK13848  81 ESTATVASGAAAGGTGEA 98
 
Name Accession Description Interval E-value
PRK13848 PRK13848
conjugal transfer protein TraC; Provisional
 1-97 2.94e-40

conjugal transfer protein TraC; Provisional


Pssm-ID: 172373  Cd Length: 98  Bit Score: 128.36  E-value: 2.94e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416572900  1 MKKPSSKIRDEIARLQEQLKLAETREAERIGRIALKAGLGDIEIDEGELQATFEDVTRRFRESKPASIGKERGG-SVIAS 79
Cdd:PRK13848   1 MKKPSSKIREEIAKLQEQLKQAETREAERIGRIALKAGLGEIEIEEAELQAAFEELAKRFRGGKGAATGKRNGGdGRTAS 80

                         90
                 ....*....|....*...
gi 2416572900 80 QQTAPIPAGADAGGNGEA 97
Cdd:PRK13848  81 ESTATVASGAAAGGTGEA 98
TraC pfam07820
TraC-like protein; The members of this family are sequences that are similar to TraC. The gene ...
 2-97 6.26e-22

TraC-like protein; The members of this family are sequences that are similar to TraC. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli CFN42 that are thought to be involved in the process of plasmid self-transmission. mobilization of plasmid p42a is of importance as it is required for transfer of plasmid p42a, which is also known as plasmid pSym as it carries most of the genes required for nodulation and nitrogen fixation by the symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58.


Pssm-ID: 429681  Cd Length: 88  Bit Score: 81.79  E-value: 6.26e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416572900  2 KKPSSKIRDEIARLQEQLKLAETREAERIGRIALKAGLGDIEIDEGELQATFEDVTRRFRESKpasigkerGGSVIASQQ 81
Cdd:pfam07820  1 KKPSRDIDEQIEKLQERRKQLEVKSAERFARAATKSGLAEMEIEETELDAIFEEIAARFRKGE--------KGSSGGSSA 72

                         90
                 ....*....|....*.
gi 2416572900 82 TAPIPAGADAGGNGEA 97
Cdd:pfam07820 73 SAHRPAGGATGASTEV 88
 
Name Accession Description Interval E-value
PRK13848 PRK13848
conjugal transfer protein TraC; Provisional
 1-97 2.94e-40

conjugal transfer protein TraC; Provisional


Pssm-ID: 172373  Cd Length: 98  Bit Score: 128.36  E-value: 2.94e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416572900  1 MKKPSSKIRDEIARLQEQLKLAETREAERIGRIALKAGLGDIEIDEGELQATFEDVTRRFRESKPASIGKERGG-SVIAS 79
Cdd:PRK13848   1 MKKPSSKIREEIAKLQEQLKQAETREAERIGRIALKAGLGEIEIEEAELQAAFEELAKRFRGGKGAATGKRNGGdGRTAS 80

                         90
                 ....*....|....*...
gi 2416572900 80 QQTAPIPAGADAGGNGEA 97
Cdd:PRK13848  81 ESTATVASGAAAGGTGEA 98
TraC pfam07820
TraC-like protein; The members of this family are sequences that are similar to TraC. The gene ...
 2-97 6.26e-22

TraC-like protein; The members of this family are sequences that are similar to TraC. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli CFN42 that are thought to be involved in the process of plasmid self-transmission. mobilization of plasmid p42a is of importance as it is required for transfer of plasmid p42a, which is also known as plasmid pSym as it carries most of the genes required for nodulation and nitrogen fixation by the symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58.


Pssm-ID: 429681  Cd Length: 88  Bit Score: 81.79  E-value: 6.26e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416572900  2 KKPSSKIRDEIARLQEQLKLAETREAERIGRIALKAGLGDIEIDEGELQATFEDVTRRFRESKpasigkerGGSVIASQQ 81
Cdd:pfam07820  1 KKPSRDIDEQIEKLQERRKQLEVKSAERFARAATKSGLAEMEIEETELDAIFEEIAARFRKGE--------KGSSGGSSA 72

                         90
                 ....*....|....*.
gi 2416572900 82 TAPIPAGADAGGNGEA 97
Cdd:pfam07820 73 SAHRPAGGATGASTEV 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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