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Conserved domains on  [gi|2416574829|ref|WP_269347853|]
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PTS glucitol/sorbitol transporter subunit IIA [Agrobacterium sp. SOY23]

Protein Classification

PTS glucitol/sorbitol transporter subunit IIA( domain architecture ID 10007929)

PTS glucitol/sorbitol transporter subunit IIA is a component of the glucitol/sorbitol-specific phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active transport system that catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SrlB COG3731
Phosphotransferase system sorbitol-specific IIA component [Carbohydrate transport and ...
 3-123 1.80e-36

Phosphotransferase system sorbitol-specific IIA component [Carbohydrate transport and metabolism];


:

Pssm-ID: 442945  Cd Length: 117  Bit Score: 120.26  E-value: 1.80e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416574829   3 LLKTKITFIGPDVSELADGGVVILFADGAPPELSEVSVLHkpDIGPVAEAPAVGTPITIGGLETEITAVGDLAWKKVIDL 82
Cdd:COG3731     2 IYQTTITEIGEEAADFLEEGMLILFGENAPDDLADYCVIH--EVGELKGEIKVGDVLKIGGQEYTITAVGDVANKNLREL 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2416574829  83 GHVVINFNDATNAERPGEICAAAVDIDELKtalaIGQTITI 123
Cdd:COG3731    80 GHITLKFDGATEAELPGTIHLEGKELPAIK----VGTTITI 116
 
Name Accession Description Interval E-value
SrlB COG3731
Phosphotransferase system sorbitol-specific IIA component [Carbohydrate transport and ...
 3-123 1.80e-36

Phosphotransferase system sorbitol-specific IIA component [Carbohydrate transport and metabolism];


Pssm-ID: 442945  Cd Length: 117  Bit Score: 120.26  E-value: 1.80e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416574829   3 LLKTKITFIGPDVSELADGGVVILFADGAPPELSEVSVLHkpDIGPVAEAPAVGTPITIGGLETEITAVGDLAWKKVIDL 82
Cdd:COG3731     2 IYQTTITEIGEEAADFLEEGMLILFGENAPDDLADYCVIH--EVGELKGEIKVGDVLKIGGQEYTITAVGDVANKNLREL 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2416574829  83 GHVVINFNDATNAERPGEICAAAVDIDELKtalaIGQTITI 123
Cdd:COG3731    80 GHITLKFDGATEAELPGTIHLEGKELPAIK----VGTTITI 116
PTSIIA_gutA pfam03829
PTS system glucitol/sorbitol-specific IIA component;
5-121 3.77e-33

PTS system glucitol/sorbitol-specific IIA component;


Pssm-ID: 427533  Cd Length: 113  Bit Score: 111.80  E-value: 3.77e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416574829   5 KTKITFIGPDVSELADGGVVILFADGAPPELSEVSVLHkpDIGPVAEAPAVGTPITIGGLETEITAVGDLAWKKVIDLGH 84
Cdd:pfam03829   3 QTTVTEIGPEAEDFLEEKMLILFGENAPDELADYCVIH--DVGELKGEIKPGDTLKIGGQEYKITAVGEVANQNLRELGH 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2416574829  85 VVINFNDATNAERPGEICAAAVDIDELKtalaIGQTI 121
Cdd:pfam03829  81 ITLKFDGAPEAELPGTIYLEGKELPEIK----VGSTI 113
PRK10377 PRK10377
PTS glucitol/sorbitol transporter subunit IIA;
3-123 4.29e-13

PTS glucitol/sorbitol transporter subunit IIA;


Pssm-ID: 182419  Cd Length: 120  Bit Score: 60.89  E-value: 4.29e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416574829   3 LLKTKITFIGPDVSELADGGVVILFADGAPPELSEVSVLHKPdiGPVAEAPAVGTPITIGGLETEITAVGDLAWKKVIDL 82
Cdd:PRK10377    4 IYQTTITRIGASATDALSDQMLITFREGAPADIEEYCFIHCH--GELKGALQPGLQFELGQHRYPVTAVGSVAEDNLREL 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2416574829  83 GHVVINFNDATNAERPGEICAAAVdideLKTALAIGQTITI 123
Cdd:PRK10377   82 GHVTLRFDGLNEAEFPGTVHVAGP----VPDDIAPGSVLKF 118
 
Name Accession Description Interval E-value
SrlB COG3731
Phosphotransferase system sorbitol-specific IIA component [Carbohydrate transport and ...
 3-123 1.80e-36

Phosphotransferase system sorbitol-specific IIA component [Carbohydrate transport and metabolism];


Pssm-ID: 442945  Cd Length: 117  Bit Score: 120.26  E-value: 1.80e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416574829   3 LLKTKITFIGPDVSELADGGVVILFADGAPPELSEVSVLHkpDIGPVAEAPAVGTPITIGGLETEITAVGDLAWKKVIDL 82
Cdd:COG3731     2 IYQTTITEIGEEAADFLEEGMLILFGENAPDDLADYCVIH--EVGELKGEIKVGDVLKIGGQEYTITAVGDVANKNLREL 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2416574829  83 GHVVINFNDATNAERPGEICAAAVDIDELKtalaIGQTITI 123
Cdd:COG3731    80 GHITLKFDGATEAELPGTIHLEGKELPAIK----VGTTITI 116
PTSIIA_gutA pfam03829
PTS system glucitol/sorbitol-specific IIA component;
5-121 3.77e-33

PTS system glucitol/sorbitol-specific IIA component;


Pssm-ID: 427533  Cd Length: 113  Bit Score: 111.80  E-value: 3.77e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416574829   5 KTKITFIGPDVSELADGGVVILFADGAPPELSEVSVLHkpDIGPVAEAPAVGTPITIGGLETEITAVGDLAWKKVIDLGH 84
Cdd:pfam03829   3 QTTVTEIGPEAEDFLEEKMLILFGENAPDELADYCVIH--DVGELKGEIKPGDTLKIGGQEYKITAVGEVANQNLRELGH 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2416574829  85 VVINFNDATNAERPGEICAAAVDIDELKtalaIGQTI 121
Cdd:pfam03829  81 ITLKFDGAPEAELPGTIYLEGKELPEIK----VGSTI 113
PRK10377 PRK10377
PTS glucitol/sorbitol transporter subunit IIA;
3-123 4.29e-13

PTS glucitol/sorbitol transporter subunit IIA;


Pssm-ID: 182419  Cd Length: 120  Bit Score: 60.89  E-value: 4.29e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2416574829   3 LLKTKITFIGPDVSELADGGVVILFADGAPPELSEVSVLHKPdiGPVAEAPAVGTPITIGGLETEITAVGDLAWKKVIDL 82
Cdd:PRK10377    4 IYQTTITRIGASATDALSDQMLITFREGAPADIEEYCFIHCH--GELKGALQPGLQFELGQHRYPVTAVGSVAEDNLREL 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2416574829  83 GHVVINFNDATNAERPGEICAAAVdideLKTALAIGQTITI 123
Cdd:PRK10377   82 GHVTLRFDGLNEAEFPGTVHVAGP----VPDDIAPGSVLKF 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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