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Conserved domains on  [gi|2428044143|ref|WP_270818325|]
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DUF4406 domain-containing protein [Aeromonas sp. Y318-3]

Protein Classification

TIR domain-containing protein( domain architecture ID 581104)

TIR (Toll/interleukin-1 receptor) domain-containing protein

CATH:  3.40.50.10140
PubMed:  32002590|29395922|34868065

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4406 super family cl46295
Domain of unknown function (DUF4406); This family of proteins is functionally uncharacterized. ...
 2-91 9.05e-17

Domain of unknown function (DUF4406); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 98 and 145 amino acids in length.


The actual alignment was detected with superfamily member pfam14359:

Pssm-ID: 464149  Cd Length: 91  Bit Score: 69.32  E-value: 9.05e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2428044143   2 KRVFIVVPFDQLVDTQIPRYLVRELLLKREGVLVLNPSVLPLGLTSEEYAKICMALLSIAQEVHFLPGWESDRVSRALHA 81
Cdd:pfam14359   1 MKVYIAGPMTGLPDYNKKAFHAAADKLRALGHVVLNPAFLPEGFSWEAYMRICYAMIDQCDEIYMLPGWERSRGARLEYD 80

                          90
                  ....*....|.
gi 2428044143  82 MAQ-TGEQVIY 91
Cdd:pfam14359  81 VAKkLGLKIVY 91
 
Name Accession Description Interval E-value
DUF4406 pfam14359
Domain of unknown function (DUF4406); This family of proteins is functionally uncharacterized. ...
 2-91 9.05e-17

Domain of unknown function (DUF4406); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 98 and 145 amino acids in length.


Pssm-ID: 464149  Cd Length: 91  Bit Score: 69.32  E-value: 9.05e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2428044143   2 KRVFIVVPFDQLVDTQIPRYLVRELLLKREGVLVLNPSVLPLGLTSEEYAKICMALLSIAQEVHFLPGWESDRVSRALHA 81
Cdd:pfam14359   1 MKVYIAGPMTGLPDYNKKAFHAAADKLRALGHVVLNPAFLPEGFSWEAYMRICYAMIDQCDEIYMLPGWERSRGARLEYD 80

                          90
                  ....*....|.
gi 2428044143  82 MAQ-TGEQVIY 91
Cdd:pfam14359  81 VAKkLGLKIVY 91
 
Name Accession Description Interval E-value
DUF4406 pfam14359
Domain of unknown function (DUF4406); This family of proteins is functionally uncharacterized. ...
 2-91 9.05e-17

Domain of unknown function (DUF4406); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 98 and 145 amino acids in length.


Pssm-ID: 464149  Cd Length: 91  Bit Score: 69.32  E-value: 9.05e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2428044143   2 KRVFIVVPFDQLVDTQIPRYLVRELLLKREGVLVLNPSVLPLGLTSEEYAKICMALLSIAQEVHFLPGWESDRVSRALHA 81
Cdd:pfam14359   1 MKVYIAGPMTGLPDYNKKAFHAAADKLRALGHVVLNPAFLPEGFSWEAYMRICYAMIDQCDEIYMLPGWERSRGARLEYD 80

                          90
                  ....*....|.
gi 2428044143  82 MAQ-TGEQVIY 91
Cdd:pfam14359  81 VAKkLGLKIVY 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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