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Conserved domains on  [gi|2439353895|ref|WP_272204353|]
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hypothetical protein [Leuconostoc suionicum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Antimicrobial17 super family cl06939
Alpha/beta enterocin family; This family consists of the alpha and beta enterocins and ...
 10-47 2.49e-06

Alpha/beta enterocin family; This family consists of the alpha and beta enterocins and lactococcin G peptides. These peptides have some antimicrobial properties; they inhibit the growth of Enterococcus spp. and a few other gram-positive bacteria. These peptides act as pore- forming toxins that create cell membrane channels through a barrel-stave mechanism and thus produce an ionic imbalance in the cell. These family of antimicrobial peptides belong to the class II group of bacteriocin.


The actual alignment was detected with superfamily member NF038035:

Pssm-ID: 414968  Cd Length: 34  Bit Score: 38.87  E-value: 2.49e-06
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2439353895 10 IDDSKLNTISGGGFFSTAGEVAGSGLYYglyfYCKGCS 47
Cdd:NF038035   1 LTEKELKTINGGGVFSKIGNVVGKALYW----LCKGLG 34
 
Name Accession Description Interval E-value
lactGalph_entA NF038035
lactococcin G-alpha/enterocin 1071A family bacteriocin;
10-47 2.49e-06

lactococcin G-alpha/enterocin 1071A family bacteriocin;


Pssm-ID: 411628  Cd Length: 34  Bit Score: 38.87  E-value: 2.49e-06
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2439353895 10 IDDSKLNTISGGGFFSTAGEVAGSGLYYglyfYCKGCS 47
Cdd:NF038035   1 LTEKELKTINGGGVFSKIGNVVGKALYW----LCKGLG 34
 
Name Accession Description Interval E-value
lactGalph_entA NF038035
lactococcin G-alpha/enterocin 1071A family bacteriocin;
10-47 2.49e-06

lactococcin G-alpha/enterocin 1071A family bacteriocin;


Pssm-ID: 411628  Cd Length: 34  Bit Score: 38.87  E-value: 2.49e-06
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 2439353895 10 IDDSKLNTISGGGFFSTAGEVAGSGLYYglyfYCKGCS 47
Cdd:NF038035   1 LTEKELKTINGGGVFSKIGNVVGKALYW----LCKGLG 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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