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Conserved domains on  [gi|2444576351|ref|WP_273595163|]
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TonB C-terminal domain-containing protein [Roseateles koreensis]

Protein Classification

energy transducer TonB( domain architecture ID 2264)

energy transducer TonB interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates such as cobalamin, and various iron compounds (such as iron dicitrate, enterochelin, aerobactin, etc.)

Gene Ontology:  GO:0031992

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TonB_2 super family cl48159
TonB C terminal; This family contains TonB members that are not captured by pfam03544.
 155-217 1.33e-04

TonB C terminal; This family contains TonB members that are not captured by pfam03544.


The actual alignment was detected with superfamily member pfam13103:

Pssm-ID: 463788 [Multi-domain]  Cd Length: 85  Bit Score: 39.62  E-value: 1.33e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2444576351 155 YANTVRQMLRDAVERHFKSDAtQATAEFSIWVARDGGIGRYEL-RPTGDARLDEALTAALDETT 217
Cdd:pfam13103   4 YAAKVRAIIRENWAPPSGISG-NLEAVVEITIDPDGTIVSVRLvKSSGNEAFDKAVLRALEKSS 66
 
Name Accession Description Interval E-value
TonB_2 pfam13103
TonB C terminal; This family contains TonB members that are not captured by pfam03544.
 155-217 1.33e-04

TonB C terminal; This family contains TonB members that are not captured by pfam03544.


Pssm-ID: 463788 [Multi-domain]  Cd Length: 85  Bit Score: 39.62  E-value: 1.33e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2444576351 155 YANTVRQMLRDAVERHFKSDAtQATAEFSIWVARDGGIGRYEL-RPTGDARLDEALTAALDETT 217
Cdd:pfam13103   4 YAAKVRAIIRENWAPPSGISG-NLEAVVEITIDPDGTIVSVRLvKSSGNEAFDKAVLRALEKSS 66
 
Name Accession Description Interval E-value
TonB_2 pfam13103
TonB C terminal; This family contains TonB members that are not captured by pfam03544.
 155-217 1.33e-04

TonB C terminal; This family contains TonB members that are not captured by pfam03544.


Pssm-ID: 463788 [Multi-domain]  Cd Length: 85  Bit Score: 39.62  E-value: 1.33e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2444576351 155 YANTVRQMLRDAVERHFKSDAtQATAEFSIWVARDGGIGRYEL-RPTGDARLDEALTAALDETT 217
Cdd:pfam13103   4 YAAKVRAIIRENWAPPSGISG-NLEAVVEITIDPDGTIVSVRLvKSSGNEAFDKAVLRALEKSS 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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