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Conserved domains on  [gi|2444578439|ref|WP_273597251|]
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HypC/HybG/HupF family hydrogenase formation chaperone [Roseateles koreensis]

Protein Classification

HypC/HybG/HupF family hydrogenase formation chaperone( domain architecture ID 10001017)

HypC/HybG/HupF family hydrogenase formation chaperone such as Helicobacter hepaticus hydrogenase maturation factor HypC

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HypC COG0298
Hydrogenase maturation factor HybG, HypC/HupF family [Posttranslational modification, protein ...
 1-73 1.25e-31

Hydrogenase maturation factor HybG, HypC/HupF family [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440067  Cd Length: 78  Bit Score: 104.84  E-value: 1.25e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2444578439  1 MCLAIPALLLELREAEQALVDLGGIRKQISIALVPEAQVGDYVIVHVGHAIGRIDPEEAQRTLALFDEMAQLE 73
Cdd:COG0298    1 MCLAIPGKVVEILDGDTALVDVGGVRREVSLALVPEVKVGDYVLVHVGFAIEKIDEEEAEETLELLEELGAAL 73
 
Name Accession Description Interval E-value
HypC COG0298
Hydrogenase maturation factor HybG, HypC/HupF family [Posttranslational modification, protein ...
 1-73 1.25e-31

Hydrogenase maturation factor HybG, HypC/HupF family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440067  Cd Length: 78  Bit Score: 104.84  E-value: 1.25e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2444578439  1 MCLAIPALLLELREAEQALVDLGGIRKQISIALVPEAQVGDYVIVHVGHAIGRIDPEEAQRTLALFDEMAQLE 73
Cdd:COG0298    1 MCLAIPGKVVEILDGDTALVDVGGVRREVSLALVPEVKVGDYVLVHVGFAIEKIDEEEAEETLELLEELGAAL 73
HupF_HypC pfam01455
HupF/HypC family;
2-66 2.30e-27

HupF/HypC family;


Pssm-ID: 460218  Cd Length: 64  Bit Score: 93.58  E-value: 2.30e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2444578439  2 CLAIPALLLELREaEQALVDLGGIRKQISIALVPEAQVGDYVIVHVGHAIGRIDPEEAQRTLALF 66
Cdd:pfam01455  1 CLAIPGKVVEIDD-EMAVVDFGGVRREVSLALVPEVKVGDYVLVHAGFAIEKIDEEEAEETLALL 64
hypC_hupF TIGR00074
hydrogenase assembly chaperone HypC/HupF; This protein is suggested by act as a chaperone for ...
 1-71 3.25e-18

hydrogenase assembly chaperone HypC/HupF; This protein is suggested by act as a chaperone for a hydrogenase large subunit, holding the precursor form before metallocenter nickel incorporation. [SS 12/31/03] More recently proposed additional function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. . Added metallochaperone and protein mod GO terms. [Protein fate, Protein folding and stabilization, Protein fate, Protein modification and repair]


Pssm-ID: 129184  Cd Length: 76  Bit Score: 70.86  E-value: 3.25e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2444578439  1 MCLAIPALLLELREaEQALVDLGGIRKQISIALVPEAQVGDYVIVHVGHAIGRIDPEEAQRTLALFDEMAQ 71
Cdd:TIGR00074  1 MCIAIPGQVVEIDE-NIALVEFCGIKRDVSLDLVGEVKVGDYVLVHVGFAISVLDEEEARETLDALQELFD 70
PRK10413 PRK10413
hydrogenase maturation factor HybG;
1-73 6.59e-10

hydrogenase maturation factor HybG;


Pssm-ID: 182438  Cd Length: 82  Bit Score: 50.13  E-value: 6.59e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2444578439  1 MCLAIPALLLELREA--EQALVDLGGIRKQISIALV----PEAQVGDYVIVHVGHAIGRIDPEEAQRTLalfDEMAQLE 73
Cdd:PRK10413   1 MCIGVPGQVLAVGEDihQLAQVEVCGIKRDVNIALIcegnPADLLGQWVLVHVGFAMSIIDEDEAKATL---DALRQME 76
 
Name Accession Description Interval E-value
HypC COG0298
Hydrogenase maturation factor HybG, HypC/HupF family [Posttranslational modification, protein ...
 1-73 1.25e-31

Hydrogenase maturation factor HybG, HypC/HupF family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440067  Cd Length: 78  Bit Score: 104.84  E-value: 1.25e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2444578439  1 MCLAIPALLLELREAEQALVDLGGIRKQISIALVPEAQVGDYVIVHVGHAIGRIDPEEAQRTLALFDEMAQLE 73
Cdd:COG0298    1 MCLAIPGKVVEILDGDTALVDVGGVRREVSLALVPEVKVGDYVLVHVGFAIEKIDEEEAEETLELLEELGAAL 73
HupF_HypC pfam01455
HupF/HypC family;
2-66 2.30e-27

HupF/HypC family;


Pssm-ID: 460218  Cd Length: 64  Bit Score: 93.58  E-value: 2.30e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2444578439  2 CLAIPALLLELREaEQALVDLGGIRKQISIALVPEAQVGDYVIVHVGHAIGRIDPEEAQRTLALF 66
Cdd:pfam01455  1 CLAIPGKVVEIDD-EMAVVDFGGVRREVSLALVPEVKVGDYVLVHAGFAIEKIDEEEAEETLALL 64
hypC_hupF TIGR00074
hydrogenase assembly chaperone HypC/HupF; This protein is suggested by act as a chaperone for ...
 1-71 3.25e-18

hydrogenase assembly chaperone HypC/HupF; This protein is suggested by act as a chaperone for a hydrogenase large subunit, holding the precursor form before metallocenter nickel incorporation. [SS 12/31/03] More recently proposed additional function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. . Added metallochaperone and protein mod GO terms. [Protein fate, Protein folding and stabilization, Protein fate, Protein modification and repair]


Pssm-ID: 129184  Cd Length: 76  Bit Score: 70.86  E-value: 3.25e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2444578439  1 MCLAIPALLLELREaEQALVDLGGIRKQISIALVPEAQVGDYVIVHVGHAIGRIDPEEAQRTLALFDEMAQ 71
Cdd:TIGR00074  1 MCIAIPGQVVEIDE-NIALVEFCGIKRDVSLDLVGEVKVGDYVLVHVGFAISVLDEEEARETLDALQELFD 70
PRK10413 PRK10413
hydrogenase maturation factor HybG;
1-73 6.59e-10

hydrogenase maturation factor HybG;


Pssm-ID: 182438  Cd Length: 82  Bit Score: 50.13  E-value: 6.59e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2444578439  1 MCLAIPALLLELREA--EQALVDLGGIRKQISIALV----PEAQVGDYVIVHVGHAIGRIDPEEAQRTLalfDEMAQLE 73
Cdd:PRK10413   1 MCIGVPGQVLAVGEDihQLAQVEVCGIKRDVNIALIcegnPADLLGQWVLVHVGFAMSIIDEDEAKATL---DALRQME 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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