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Conserved domains on  [gi|2444586866|ref|WP_273604447|]
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MULTISPECIES: hypothetical protein [unclassified Pseudoalteromonas]

Protein Classification

S9 family peptidase( domain architecture ID 1904050)

peptidase S9 family protein, an oligopeptidase which may cleave the prolyl bond of short peptides, similar to oligopeptidase B, which cleaves on the C-terminal side of lysyl and argininyl residues

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TolB super family cl43285
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 63-134 8.30e-04

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG0823:

Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 39.27  E-value: 8.30e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2444586866  63 IYFTheviSSEQSQTDIAYYDLATKQVSNITNTPVSEYSPTVMPSKQSLsAIVVEQDSKQKLWQYPLDTEQA 134
Cdd:COG0823     1 LAFT----LSRDGNSDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRI-AFTSDRGGGPQIYVVDADGGEP 67
 
Name Accession Description Interval E-value
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 63-134 8.30e-04

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 39.27  E-value: 8.30e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2444586866  63 IYFTheviSSEQSQTDIAYYDLATKQVSNITNTPVSEYSPTVMPSKQSLsAIVVEQDSKQKLWQYPLDTEQA 134
Cdd:COG0823     1 LAFT----LSRDGNSDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRI-AFTSDRGGGPQIYVVDADGGEP 67
 
Name Accession Description Interval E-value
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 63-134 8.30e-04

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 39.27  E-value: 8.30e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2444586866  63 IYFTheviSSEQSQTDIAYYDLATKQVSNITNTPVSEYSPTVMPSKQSLsAIVVEQDSKQKLWQYPLDTEQA 134
Cdd:COG0823     1 LAFT----LSRDGNSDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRI-AFTSDRGGGPQIYVVDADGGEP 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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