|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
35-314 |
8.61e-57 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 186.08 E-value: 8.61e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 35 PQMLNANVLGVFVRQVVPLGILVLGQLLVMRVKSIDLSGGGVILLINYCISSGMFA-GASFAFFVLLAIGLGLAIGFFNG 113
Cdd:COG1172 37 PGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAlGLPILLAILLALLVGALLGLLNG 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 114 LMVAKRRVSAVIVTLALSIVLVGLVQYLSSGKPPGDVPTFFGEMFNTRFAGLPSPVLFWIVLTALMALLLSQSVFGRFVT 193
Cdd:COG1172 117 LLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIY 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 194 AVGESMPAAHFSGVPVERTVILAHTVSGLMAAIAALVQTASIAVGSVRVGLDLPILSVAATILGGVVFGRGEGGVWGPFF 273
Cdd:COG1172 197 AVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLL 276
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2459170568 274 GVLCFAFLFVVMTMFGVGEAGKLVAQGLIILLAAVFYGLRA 314
Cdd:COG1172 277 GALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRR 317
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
50-310 |
1.60e-51 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 170.67 E-value: 1.60e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 50 VVPLGILVLGQLLVMRVKSIDLSGGGVILLINYCISSGMF-AGASFAFFVLLAIGLGLAIGFFNGLMVAKRRVSAVIVTL 128
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVnAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 129 ALSIVLVGLVQYLSSGKP-PGDVPTFFGEMFNTRFAGLPSPVLFWIVLTALMALLLSQSVFGRFVTAVGESMPAAHFSGV 207
Cdd:cd06579 81 GTMFILRGLALLITGGRPiSGLPPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 208 PVERTVILAHTVSGLMAAIAALVQTASIAVGSVRVGLDLPILSVAATILGGVVFGRGEGGVWGPFFGVLCFAFLFVVMTM 287
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 2459170568 288 FGVGEAGKLVAQGLIILLAAVFY 310
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
50-309 |
4.79e-26 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 105.53 E-value: 4.79e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 50 VVPLGILVLGQLLVMRVKSIDLSGGGVILLINYCISSGMFAGASFAFFVLLAIGLGLAIGFFNGLMVAKRRVSAVIVTLA 129
Cdd:PRK11285 63 ISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATESLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 130 LSIVLVGLVQYLSSGKPPGDVPTFFGEMFNTRFAGLPSPVLFWIVLTALMALLLSQSVFGRFVTAVGESMPAAHFSGVPV 209
Cdd:PRK11285 143 TMQIVRGLAYIISDGKAVGISDERFFALGYANFFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPV 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 210 ERTVILAHTVSGLMAAIAALVQTASIAVGSVRVGLDLPILSVAATILGGVVFGRGEGGVWGPFFGVLCFAFLFVVMTMFG 289
Cdd:PRK11285 223 VRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLN 302
|
250 260
....*....|....*....|
gi 2459170568 290 VGEAGKLVAQGLIILLAAVF 309
Cdd:PRK11285 303 ISPFYQYVVRGLILLAAVLF 322
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
46-307 |
3.68e-14 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 71.14 E-value: 3.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 46 FVRQVVPLGILVLGQLLVM-RVKSIDLSGGGVILLINYCIS-SGMFAGASFAFFVLLAIGLGLAIGFFNGLMVAKRRVSA 123
Cdd:pfam02653 5 ILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAmLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKINE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 124 VIVTLALSIVLVGLVQYL--------SSGKPPGDVPTFFGEMFNTRFAGLPspvLFWIVLTALMALLLSQSVFGRFVTAV 195
Cdd:pfam02653 85 VIITLLLNLAALGLALFLvtgilggeGGTSGITGPSGFPGAFLSFAFAFIF---LLALLLVLALWLLLYRTKFGRALRAV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 196 GESMPAAHFSGVPVERTVILAHTVSGLMAAIAALVQTASIAVGSVR-VGLDLPILSVAATILGGVvfgrgeGGVWGPFFG 274
Cdd:pfam02653 162 GENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA------GSPIGVVIG 235
|
250 260 270
....*....|....*....|....*....|....
gi 2459170568 275 VLCFAFLFVVMT-MFGVGEAGKLVAQGLIILLAA 307
Cdd:pfam02653 236 SLIIGLVQSLGLgALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
35-314 |
8.61e-57 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 186.08 E-value: 8.61e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 35 PQMLNANVLGVFVRQVVPLGILVLGQLLVMRVKSIDLSGGGVILLINYCISSGMFA-GASFAFFVLLAIGLGLAIGFFNG 113
Cdd:COG1172 37 PGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAlGLPILLAILLALLVGALLGLLNG 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 114 LMVAKRRVSAVIVTLALSIVLVGLVQYLSSGKPPGDVPTFFGEMFNTRFAGLPSPVLFWIVLTALMALLLSQSVFGRFVT 193
Cdd:COG1172 117 LLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIY 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 194 AVGESMPAAHFSGVPVERTVILAHTVSGLMAAIAALVQTASIAVGSVRVGLDLPILSVAATILGGVVFGRGEGGVWGPFF 273
Cdd:COG1172 197 AVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLL 276
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2459170568 274 GVLCFAFLFVVMTMFGVGEAGKLVAQGLIILLAAVFYGLRA 314
Cdd:COG1172 277 GALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRR 317
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
50-310 |
1.60e-51 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 170.67 E-value: 1.60e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 50 VVPLGILVLGQLLVMRVKSIDLSGGGVILLINYCISSGMF-AGASFAFFVLLAIGLGLAIGFFNGLMVAKRRVSAVIVTL 128
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVnAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 129 ALSIVLVGLVQYLSSGKP-PGDVPTFFGEMFNTRFAGLPSPVLFWIVLTALMALLLSQSVFGRFVTAVGESMPAAHFSGV 207
Cdd:cd06579 81 GTMFILRGLALLITGGRPiSGLPPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 208 PVERTVILAHTVSGLMAAIAALVQTASIAVGSVRVGLDLPILSVAATILGGVVFGRGEGGVWGPFFGVLCFAFLFVVMTM 287
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 2459170568 288 FGVGEAGKLVAQGLIILLAAVFY 310
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
50-309 |
4.79e-26 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 105.53 E-value: 4.79e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 50 VVPLGILVLGQLLVMRVKSIDLSGGGVILLINYCISSGMFAGASFAFFVLLAIGLGLAIGFFNGLMVAKRRVSAVIVTLA 129
Cdd:PRK11285 63 ISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATESLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 130 LSIVLVGLVQYLSSGKPPGDVPTFFGEMFNTRFAGLPSPVLFWIVLTALMALLLSQSVFGRFVTAVGESMPAAHFSGVPV 209
Cdd:PRK11285 143 TMQIVRGLAYIISDGKAVGISDERFFALGYANFFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPV 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 210 ERTVILAHTVSGLMAAIAALVQTASIAVGSVRVGLDLPILSVAATILGGVVFGRGEGGVWGPFFGVLCFAFLFVVMTMFG 289
Cdd:PRK11285 223 VRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLN 302
|
250 260
....*....|....*....|
gi 2459170568 290 VGEAGKLVAQGLIILLAAVF 309
Cdd:PRK11285 303 ISPFYQYVVRGLILLAAVLF 322
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
48-306 |
6.32e-23 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 96.71 E-value: 6.32e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 48 RQVVPLGILVLGQLLVMRVKSIDLSGGGVILLINYCISSGMFAGASFAFFVLLAIGLGLAIGFFNGLMVAKRRVSAVIVT 127
Cdd:PRK09512 50 QQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIAT 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 128 LALSIVLVGLVQYLSSGKPPG----DVPTFFGEMFNTRFAGLPSPVLFWIVLTALMALLLSQSVFGRFVTAVGESMPAAH 203
Cdd:PRK09512 130 LVMMLLLRGVTMVYTDGSPINtgftDNADLFGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATR 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 204 FSGVPVERTVILAHTVSGLMAAIAALVQTASIAVGSVRVGLDLPILSVAATILGGVVFGRGEGGVWGPFFGVLCFAFLFV 283
Cdd:PRK09512 210 LSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNN 289
|
250 260
....*....|....*....|...
gi 2459170568 284 VMTMFGVGEAGKLVAQGLIILLA 306
Cdd:PRK09512 290 GLNLLGVSSYYQMIVKAVVILLA 312
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
47-309 |
2.36e-22 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 95.95 E-value: 2.36e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 47 VRQVVPLGILVLGQLLVMRVKSIDLSGGGV---------ILLINYcissgmfaGASFAFFVLLAIGLGLAIGFFNGLMVA 117
Cdd:COG4214 56 LLQNSYIGILAIGMVLVILLGHIDLSVGSVsgfvgavaaVLMVNW--------GLPWWLAILAALLVGALIGAWQGFWVA 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 118 KRRVSAVIVTLALSIVLVGLVQYLSSGKPPGDVPTFFGEMFNT------------------------------------- 160
Cdd:COG4214 128 YVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIGNGflpdilgtlswvlgavavaayvalqlrsrrrrrrygl 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 161 ---------------------------RFAGLPSPVLFWIVLTALMALLLSQSVFGRFVTAVGESMPAAHFSGVPVERTV 213
Cdd:COG4214 208 pveplwlfvlklallavlilgavyllnSYRGIPIVVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVT 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 214 ILAHTVSGLMAAIAALVQTASIAVGSVRVGLDLPILSVAATILGGV-VFGrGEGGVWGPFFGVLCFAFLFVVMTMFGVGE 292
Cdd:COG4214 288 FSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTsLFG-GVGTVYGAVIGALVMGSLNNGMSLLGVDS 366
|
330
....*....|....*..
gi 2459170568 293 AGKLVAQGLIILLAAVF 309
Cdd:COG4214 367 DWQQIVKGLVLLLAVAF 383
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
53-311 |
6.77e-21 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 91.33 E-value: 6.77e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 53 LGILVLGQLLVMRVKSIDLSGGGVILLINYCISSGMFAGASFAFFVLLAIGLGLAIGFFNGLMVAKRRVSAVIVTLALSI 132
Cdd:PRK15432 47 LILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNAGYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 133 VLVGLVQYLSSGKPPGDVPTFFGEMFNTRFAGLPSPVLFWIVLTALMALLLSQSVFGRFVTAVGESMPAAHFSGVPVERT 212
Cdd:PRK15432 127 LYRGIMLLWTGGKWIEGLPAELKQLSAPILLGISPIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAI 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 213 VILAHTVSGLMAAIAALVQTASIAVGSVRVGLDLPILSVAATILGGVVFGRGEGGVWGPFFGVLCFAFLFVVMTMFGVGE 292
Cdd:PRK15432 207 RIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPA 286
|
250
....*....|....*....
gi 2459170568 293 AGKLVAQGLIILLAAVFYG 311
Cdd:PRK15432 287 WWNDFIAGLVLLGVLVFDG 305
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
41-306 |
6.45e-19 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 85.21 E-value: 6.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 41 NVLGVFVRQVVPLgILVLGQLLVMRVKSIDLSGGGVILLINYCISSGMFAGAS-FAFFVLLAIGLGLAIGFFNGLMVAKR 119
Cdd:PRK09699 38 NITQIFVQSSVTV-LIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDpFLAALIGGVLVGGALGAINGCLVNWT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 120 RVSAVIVTLALSIVLVGLVQYLSSGKPPGDVPTFFGEMFNTRFAGLPSPVLFWIVLTALMALLLSQSVFGRFVTAVGESM 199
Cdd:PRK09699 117 GLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNK 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 200 PAAHFSGVPVERTVILAHTVSGLMAAIAALVQTASIAVGSVRVGLDLPILSVAATILGGVVFGRGEGGVWGPFFGVLCFA 279
Cdd:PRK09699 197 NSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIG 276
|
250 260
....*....|....*....|....*..
gi 2459170568 280 FLFVVMTMFGVGEAGKLVAQGLIILLA 306
Cdd:PRK09699 277 TINNGLNILQVQTYYQLVVMGGLIIAA 303
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
98-309 |
5.18e-16 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 77.42 E-value: 5.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 98 VLLAIGLGLAIGFFNGLMVAKRRVSAVIVTLALSIVLVGL--VQYLSSGKPP--GDVPTF--FGEMFNtRFAG--LPSPV 169
Cdd:PRK09478 109 ILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGInsLYYDFVGASPisGFDSGFstFAQGFV-ALGSfrLSYIT 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 170 LFWIVLTALMALLLSQSVFGRFVTAVGESMPAAHFSGVPVERTVILAHTVSGLMAAIAALVQTASIAVGSVRVGLDLPIL 249
Cdd:PRK09478 188 FYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELD 267
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 250 SVAATILGGVVFGRGEGGVWGPFFGVLCFAFLFVVMTMFGVGEAGKLVAQGLIILLAAVF 309
Cdd:PRK09478 268 AIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVAL 327
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
33-308 |
3.00e-15 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 75.25 E-value: 3.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 33 SRPQMLNANVLGVFVRQVVPLGILVLGQLLVMRVKSIDLSGGGVILLINYCISSGMFAGASFAFFVLLAIGLGLAIGFFN 112
Cdd:PRK15038 25 INPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGLIN 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 113 GLMVAKRRVSAVIVTLAlSIVLVGLVQYLSSG-------KPPGDVPTFFGEMFNTRFAGLPSPVLFWIVLTALMALLLSQ 185
Cdd:PRK15038 105 AGLIIYTGVNPLVITLG-TLYLFGGSALLLSGmagatgyEGIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLLMHR 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 186 SVFGRFVTAVGESMPAAHFSGVPVERTVILAHTVSGLMAAIAALVQTASIAVGSVRVGLDLPILSVAATILGGVVFGRGE 265
Cdd:PRK15038 184 THAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGS 263
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2459170568 266 GGVWGPFFGVLCFAFLFVVMTMFGVGEAGKLVAQGLIILLAAV 308
Cdd:PRK15038 264 GSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVV 306
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
46-307 |
3.68e-14 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 71.14 E-value: 3.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 46 FVRQVVPLGILVLGQLLVM-RVKSIDLSGGGVILLINYCIS-SGMFAGASFAFFVLLAIGLGLAIGFFNGLMVAKRRVSA 123
Cdd:pfam02653 5 ILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAmLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKINE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 124 VIVTLALSIVLVGLVQYL--------SSGKPPGDVPTFFGEMFNTRFAGLPspvLFWIVLTALMALLLSQSVFGRFVTAV 195
Cdd:pfam02653 85 VIITLLLNLAALGLALFLvtgilggeGGTSGITGPSGFPGAFLSFAFAFIF---LLALLLVLALWLLLYRTKFGRALRAV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 196 GESMPAAHFSGVPVERTVILAHTVSGLMAAIAALVQTASIAVGSVR-VGLDLPILSVAATILGGVvfgrgeGGVWGPFFG 274
Cdd:pfam02653 162 GENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA------GSPIGVVIG 235
|
250 260 270
....*....|....*....|....*....|....
gi 2459170568 275 VLCFAFLFVVMT-MFGVGEAGKLVAQGLIILLAA 307
Cdd:pfam02653 236 SLIIGLVQSLGLgALGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
52-306 |
6.30e-13 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 67.69 E-value: 6.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 52 PLGILVLGQLLVMRV-KSIDLSGGGVILLINYCISSGMFAGASFAFFVLLAIGLGLAIGFFNGLMVAKRRVSAVIVTLAL 130
Cdd:cd06574 3 IYAILALGVYIVFRIlGFPDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 131 SIVLVGLVQYLSSGK--PPGDVPTFFGEMFNTRFAGLPSPVLFWIVLTALMALLLS---QSVFGRFVTAVGESMPAAHFS 205
Cdd:cd06574 83 MIGLYSINLRIMGGPniPLGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIwflRTKLGLAMRATGDNPDMARSL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 206 GVPVERTVILAHTVSGLMAAIAALVQTASIAVGSVRVGLDLPILSVAATILGGVVFGRGEggVWGPFFGVLCFAFLFVVM 285
Cdd:cd06574 163 GINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRRT--IKASILGVIIGAILYRIA 240
|
250 260
....*....|....*....|....*.
gi 2459170568 286 TMFGVGEAG-----KLVAQGLIILLA 306
Cdd:cd06574 241 LALALGSGLipsdlKLITAGVIVLVL 266
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
35-276 |
7.41e-12 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 64.97 E-value: 7.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 35 PQMLNANVLGVFVRQVVPLGILVLGQLLVMRVKSIDLSGGGVILLINYCISSGM-FAGASFAFFVLLAIGLGLAIGFFNG 113
Cdd:PRK11618 27 PGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIgDYGWSPLLAFPLVLVMGAAFGAFMG 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 114 LMVAKRRVSAVIVTLALSIVLVGLVQYLSSGKPPGDVPTFFG-EMFNTRFAG---LPSPVLFWIVLTALMALLLSQSVFG 189
Cdd:PRK11618 107 ALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHPFYDTlSSLAWKLPGggrLSAMALIMLAVVAIGIFLAHRTRFG 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 190 RFVTAVGESMPAAHFSGVPVERTVILAHTVSGLMAAIAALVQT----ASIAVGSVRVGLDlpilSVAATILGGVVFGRGE 265
Cdd:PRK11618 187 NNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSlytsAGYALAAVGVELD----AIAAVVIGGTLLTGGV 262
|
250
....*....|.
gi 2459170568 266 GGVWGPFFGVL 276
Cdd:PRK11618 263 GTVLGTLFGVL 273
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
90-309 |
5.21e-10 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 58.99 E-value: 5.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 90 AGASFAFFVLLAIGLGLAIGFFNGLMVAKRR-VSAVIVTLALSIVLVGLVQYL------SSGKPPGDVPTFFGEMFNTRF 162
Cdd:cd06581 43 LGLPFWLALLAAGLVAALVGLLLGLPALRLRgVYFAIATLAFAEIVRLLALNWssltggSNGLSGIPPPLLGGLLLSSPL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 163 AGLPSpVLFWIVLTALMALLLSQSVFGRFVTAVGESMPAAHFSGVPVERTVILAHTVSGLMAAIA-ALVQTASIAVGSVR 241
Cdd:cd06581 123 AFYYL-VLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAgALYAHYLGFVSPES 201
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2459170568 242 VGLDLPILSVAATILGGVvfgrgeGGVWGPFFGVLCFAFLFVVMTmfGVGEAGKLVAQGLIILLAAVF 309
Cdd:cd06581 202 FGFALSIELLLMVVLGGL------GSLLGPVLGAALLVLLPELLR--SLGPGLRLLVFGLLLILVVLF 261
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
88-309 |
1.18e-09 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 58.17 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 88 MFAGASFAFFVLLAIGLGLAIGFFNGLMVAKRR-VSAVIVTLALSIVLVGLVQYL------SSGKPPGDVPTFFGEMFNT 160
Cdd:COG4177 51 THLGLPFWLALLLAGLVAALLGLLIGLPALRLRgDYLAIATLAFAEIVRLLALNLesltggADGLSGIPRPTLFGLDLGS 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 161 RFAGLPSpVLFWIVLTALMALLLSQSVFGRFVTAVGESMPAAHFSGVPVERTVILAHTVSGLMAAIA-ALVQTASIAVGS 239
Cdd:COG4177 131 PLAFYYL-VLALLVLVLLLLRRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAgALYAHYVGFVSP 209
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 240 VRVGLDLPILSVAATILGGVvfgrgeGGVWGPFFGVlcfAFLFVVMTMFGVGEAGKLVAQGLIILLAAVF 309
Cdd:COG4177 210 ESFSFLLSIEILLMVVLGGL------GSLLGPVLGA---VLLVLLPELLRSLPEYRLLIFGLLLILVVLF 270
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
98-312 |
1.79e-08 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 55.13 E-value: 1.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 98 VLLAIGLGLAIGFFNGLMVAKRRVSAVIVTLALSIVLVGLVQYLSSG--KPPGD-------------VPTFFGEMfntrf 162
Cdd:COG4603 120 LLAGALAGALWAAIPGLLKARFGVNEVITTLMLNYIALYLVNYLVRGplRDPGSgfpqtppipesarLPRLLPGT----- 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 163 aGLPSPVLFWIVLTALMALLLSQSVFGRFVTAVGESMPAAHFSGVPVERTVILAHTVSGLMAAIAALVQTASIAvGSVRV 242
Cdd:COG4603 195 -RLHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEVLGVQ-GRLTP 272
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2459170568 243 GLDLPI--LSVAATILGGvvfgrgeGGVWGPFFGVLCFAFLFV----VMTMFGVGEAGKLVAQGLIILLAAVFYGL 312
Cdd:COG4603 273 GFSPGYgfTGIAVALLGR-------NNPLGIILAALLFGALYVggdaMQRALGVPSEIVDVIQGLIILFVLAADFL 341
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
90-304 |
5.65e-08 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 53.14 E-value: 5.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 90 AGASFAFFVLLAIGLGLAIGFFNGLMVAKR-----RVSAVIVTLALSIVLVGLVQYLSSGKPPGdVPTFFGEMFNTRFAG 164
Cdd:COG0559 57 LGLPLWLALLLAVLVAALLGVLLERLVIRPlrgapPLALLLATIGLSLVLQGLVLLIFGADPRS-FPALLSGSVELGGVS 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 165 LPSPVLFWIVLTALMA----LLLSQSVFGRFVTAVGESMPAAHFSGVPVERTVILAHTVSGLMAAIAALVQTASIAVgSV 240
Cdd:COG0559 136 IPAYRLFIIVVALVLLaalwLFLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSV-SP 214
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2459170568 241 RVGLDLPILSVAATILGGVvfgrgeGGVWGPFFGVLCFAFLFVVMTMFGVGEAGKLVAQGLIIL 304
Cdd:COG0559 215 TMGFLLGLKAFAAVVLGGL------GSIPGAVVGGLLLGLAESLGAAYLPSGYKDVVAFVLLIL 272
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
90-304 |
9.92e-08 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 52.43 E-value: 9.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 90 AGASFAFFVLLAIGLGLAIGFFNGLMV----AKRRVSAVIVTLALSIVLVGLVQYLSSGKPPGDVPTFFGEMFNTRFAGL 165
Cdd:cd06582 47 LGLPFWLALLLALLVAALLGVLLERLVlrplRGAPLLTLLITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTI 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 166 PSPVLFWIVLTALMA----LLLSQSVFGRFVTAVGESMPAAHFSGVPVERTVILAHTVSGLMAAIAALVqTASIAVGSVR 241
Cdd:cd06582 127 PPYRLFIIAVALVLLaalyLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVL-LAPITGVSPT 205
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2459170568 242 VGLDLPILSVAATILGGVvfgrgeGGVWGPFFGVLCFAFLFVVMTMFGVGEAGKLVAQGLIIL 304
Cdd:cd06582 206 MGLLLLLKAFAAVVLGGL------GSIPGAVVGGLLLGLAESLAAAYLSSGYKDAVAFVLLIL 262
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
51-235 |
1.95e-07 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 50.90 E-value: 1.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 51 VPLGILVLGQLLVMRVKSIDLSGGGVILL-----INYCISSGMFAGASFAFFVLLAIGLGLAIGFFNGLMVAKRRVSAVI 125
Cdd:cd06580 2 TPLILAALGVAISFRAGVFNIGLEGQMLLgafaaALVALYLGLPATGSLPLGLLAAALAGALWALLPALLKAKLGVNEVI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2459170568 126 VTLALSIVLVGLVQYLssgkppgdvptffgemfntrfaglpspVLFWIVLTALMALLLSQSVFGRFVTAVGESMPAAHFS 205
Cdd:cd06580 82 SGLMLNYIALGLTSYL---------------------------LLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYA 134
|
170 180 190
....*....|....*....|....*....|
gi 2459170568 206 GVPVERTVILAHTVSGLMAAIAALVQTASI 235
Cdd:cd06580 135 GINVKRVRLLAMLISGALAGLAGAYLVLGV 164
|
|
| |
