|
Name |
Accession |
Description |
Interval |
E-value |
| LT_TF-like |
cd13402 |
lytic transglycosylase-like domain of tail fiber-like proteins and similar domains; These tail ... |
1293-1392 |
3.72e-27 |
|
lytic transglycosylase-like domain of tail fiber-like proteins and similar domains; These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
Pssm-ID: 381605 [Multi-domain] Cd Length: 117 Bit Score: 107.67 E-value: 3.72e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1293 LAAMLQQIQIESGGDPRAVNNWDSNAAKGTPSGGLLQVIEPTYRDvrnrYpdAFEGlPDDRFHPLTNLVAGVGAVKRDWG 1372
Cdd:cd13402 1 LNALLRQIQTESGGNPNAINNWDSNAKAGHPSKGLMQVIPPTFAA----Y--APPG-HGNILNPLDNILAAINYAKARYG 73
|
90 100
....*....|....*....|..
gi 2486066007 1373 GPAGRW-PTKD-GYATGGVLPG 1392
Cdd:cd13402 74 SGFALAaGGGGgGYANGGIVTK 95
|
|
| HI1514 |
COG3941 |
Phage tail tape-measure protein, controls tail length [Mobilome: prophages, transposons]; |
177-565 |
3.12e-22 |
|
Phage tail tape-measure protein, controls tail length [Mobilome: prophages, transposons];
Pssm-ID: 443141 [Multi-domain] Cd Length: 833 Bit Score: 104.67 E-value: 3.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 177 RNAGDELDETANKASAFGDKftagLAEISRGALLGIGAKIGTTIMGGVqeaVSTGWETAMSLDQVSRSLSAMTSETQVAE 256
Cdd:COG3941 4 RAFKRELDGLSRSGKSAAGK----LESSFSRAAGGIAAAFGLNAAAGF---GKSGVKTAAEFEQLQISLNTLLGSAEKAA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 257 DMMVSLREVASDRPIDYTSFLEGANTLAYMGYEGEQAIKVMDNVGRAAVGAGRDGDDaMQTVIGALGKMQANGKVTAEEI 336
Cdd:COG3941 77 EALAWLKEFAADTPFELAGLTDAYKKLLAFGLDAEPTRGILTALGDAAAALGGSQEQ-LEGATLALGQMWAKGKLQGEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 337 GQISNSGVPMLSALIDHFGMAEgsfGELSSMISEGKVDLKDVIGALEEAGGADF----ENLHNSFENVNSSLENQIAMLK 412
Cdd:COG3941 156 NQLAERGVPAWKLLAKAMGVTV---AELQKMVEKGKLGAEDAIPALLDAMGKRFggaaAAQMKTLSGMVSNLGDAWTEFL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 413 DDV-----FTSIGESLQPILQDMDFEAIADTVGDVVGRIISLLPGMVEIAMTAFDNLGGVIGDVSGVLESVWGWIEKNKD 487
Cdd:COG3941 233 AAVgdsgaFDALKNGLQGLLELLDELAEDGFAKGVSAALITAFEAAKTAYEVADALGKVLAAIVGLAALGLATALAAVLL 312
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2486066007 488 ALKALA-VGVGIAVGAWKLFTGAMALHAVAIQIADKGWKGYIASTKIATAVTKLFNKATKANIIGIIATALIAVGGALV 565
Cdd:COG3941 313 AAGALAlAQALAAALAGAAAAAADAILALAVLVAAAAAAAATAGGTLGSAATALEALAAFAALSSASLEGTVSAVADAA 391
|
|
| SLT |
COG3953 |
SLT domain protein [Mobilome: prophages, transposons]; |
1269-1375 |
3.00e-18 |
|
SLT domain protein [Mobilome: prophages, transposons];
Pssm-ID: 443153 [Multi-domain] Cd Length: 325 Bit Score: 88.23 E-value: 3.00e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1269 GGGAEQWRDLASEALKR-MGYGDEHLAAMLQQIQIESGGDPRAVNNWDSNAAKGTPSGGLLQVIEPTYRDvrnrYpdAFE 1347
Cdd:COG3953 208 GGGAGGWGIDIRQAAALgVPVSEAWVDGILRIIQHESGGNPNAINLWDSNAAAGTPSKGLMQVIPPTFNA----Y--KLP 281
|
90 100
....*....|....*....|....*...
gi 2486066007 1348 GLpDDRFHPLTNLVAGVGAVKRDWGGPA 1375
Cdd:COG3953 282 GH-GNIYNPVDNILAGINYAKSRYGSSD 308
|
|
| YqbO |
COG5280 |
Phage-related minor tail protein [Mobilome: prophages, transposons]; |
170-975 |
1.46e-16 |
|
Phage-related minor tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444091 [Multi-domain] Cd Length: 962 Bit Score: 86.52 E-value: 1.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 170 RELREEVRNAGDELDETANKASAFGDKFTAGLAEISRGALLGIGAKIGTTIMGGVQeavstgWETAMSldQVSRSLSAMT 249
Cdd:COG5280 17 SGLTKEIKGFGKKFERAGEKMDRAGKKMKSIGAALTAGVTAALVAAGAAAVKAAAD------FEKAMS--TVQAVTGATG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 250 SEtqvAEDMMVSLREVASDRPidyTSFLEGANTLAYM---GYEGEQAIKVMDNVGRAAVGAGRDGDDAMQTVIGALG--K 324
Cdd:COG5280 89 EE---LEALEQLAKELGATTG---ESAAEVAEALGSVaqaGLSGDELIAVTEGALVLAAATGVDLNEAAEIVASAMNafG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 325 MQANGKVTAEEI----GQISNSGVPMLSALIDHFGMA--------------------EGSFGE-----LSSMISEGKVDL 375
Cdd:COG5280 163 LSADEASRVADLlaagAQAGNTTSDELADALKEYAPLaaalgfsleetlaalallanAGIKGSdagtaLKEFLIRLADPS 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 376 KDVIGALEEAG------GADFENLHNSFENVNSSLENQIAMLKDDVFTSIGESlqPILQDM------------------- 430
Cdd:COG5280 243 KTAAEALEELGinvfdaSGKLKGLSEILGELAKKFAGLGEAARAAVLAAIFGD--DAGRAAialllfgtdwyakltaalk 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 431 DFEAIADTVGDVV-----GRIISLLPGMVEIAMTAFDNLGGVIGDVSGVLESVWGWIEKNKDALKALAVGVGI---AVGA 502
Cdd:COG5280 321 NSAGAADEAAATMqdnlaGALESLKSALEGLAITIGETLLPALRDAVEALTGLADWFNELSPAVQELIIAIAGlvaALGP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 503 WKLFTGAMAlhavaiqiadKGWKGYIASTKIATAVTKLFNKATKANIIGIIATALIAVGGALVyfftqtetgrelwekft 582
Cdd:COG5280 401 LLLILGALI----------TGIGALAGAFGILSTALAKAKGALLAGPIGIVIAAIAALAAALV----------------- 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 583 gVLADGWDwltdklgggidwitekfsEFTGWLTDTWNNITGWVSDAWNGIVSLFQGDFTSEMREAFGVEEdspiigffft 662
Cdd:COG5280 454 -LLYKNWD------------------TIKEFLTGLWNSIKEAIGGVWDGIKTSVEGLKGAAGAALSAAAG---------- 504
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 663 irDAVISVGDFISAFWDGLVNAAQWVISVLGTvLITPFVLYWNVLSGAVEFAWENVIKPAWDAMASAAtwlwenvlspvf 742
Cdd:COG5280 505 --KAIEALAGISVDALKQGVILSGTISMLWGA-AGTEVSLKGGAAQDNVSDAASSAGDGALAIINSAE------------ 569
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 743 TWIGDKWTELSETFSSVWETIKTAVFDAFTwyidrvkanfeIVTGALNTAWTWVKDQFLIVWGFIRDLVFTAWNNAVNNV 822
Cdd:COG5280 570 QAIIGLAAALKTASTSSALQASTKAAAATK-----------AEKTILAIAMATVKGVTSATAALANAAGVILQGAIKNGI 638
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 823 KAVFTLVTTALSSAWA----WLRDMLLPVWETIRDAVFHAFENVVRGVQFVFETVTGAIS-----GAWSWLSDMLHAGWV 893
Cdd:COG5280 639 SGALDSAGATTVAKLAeeeaINEKIVELLKAAANGANKEAVANALLLDAAAKQNINGQEAilegiTAKGVQTDELQDSDA 718
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 894 WIKENVFDAMGRGlDTVEGWFQTGVDSIKSIWDGLKRKLAEPINFVIRTV--YNDGIKKVFDGVAEKvGLDARLPTIKEI 971
Cdd:COG5280 719 IQAKFQFEELSEG-AKATINAINGNGVLGGIIADGIKTNSAELKAAANELkgDINRVAAAINSLAEA-GAEEIKSEAKEA 796
|
....
gi 2486066007 972 GGFA 975
Cdd:COG5280 797 GSDK 800
|
|
| TMP_3 |
pfam20155 |
Tape measure protein; This entry represents phage tape measure proteins that are required to ... |
233-421 |
1.15e-15 |
|
Tape measure protein; This entry represents phage tape measure proteins that are required to assemble the page tail. The protein serves as a base for tail tube protein polymerization and acts as a template for tail length determination.
Pssm-ID: 466312 [Multi-domain] Cd Length: 192 Bit Score: 77.26 E-value: 1.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 233 ETAMSLDQVSRSLSAMTSETQVAEDMMVSLREVASDRPIDYTSFLEGANTLA----YMGYEGEQAIKVMDNVGRAAVGAG 308
Cdd:pfam20155 5 KTADAYTKLQARLKLATGSAEEAAEVQQQLFDIAQRTGSSLEETAELYARLAaalkELGLSQDQVLDLTEALSKALAVSG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 309 RDGDDAmQTVIGALGKMQANGKVTAEEIGQISNSGVPMLSALIDHFGMaegSFGELSSMISEGKVDLKDVIGALEEAGGA 388
Cdd:pfam20155 85 ASAEEA-SSALLQLGQALASGKLRGEEFNSVLEQAPGLLQALAKGLGV---STGELRKMASDGKLTADVFFDALLKASDE 160
|
170 180 190
....*....|....*....|....*....|...
gi 2486066007 389 dfenLHNSFENVNSSLENQIAMLKDDVFTSIGE 421
Cdd:pfam20155 161 ----LAGEFAKMPLTIGGAFTNLKNAWTKLVGE 189
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
57-196 |
4.93e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.55 E-value: 4.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 57 EKANFRVKKSTQELEVAESKLTEQKNKSEAANLAVESAaRKREEAEGKGIEAVSKAEQdlLKKRAAAERESRNLIR---- 132
Cdd:PTZ00121 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK-KKADEAKKKAEEDKKKADE--LKKAAAAKKKADEAKKkaee 1429
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2486066007 133 ---AEESYESAltESARAAESLEKRQEELSKANDGS-----SRTFRELR---EEVRNAgDELDETANKASAFGDK 196
Cdd:PTZ00121 1430 kkkADEAKKKA--EEAKKADEAKKKAEEAKKAEEAKkkaeeAKKADEAKkkaEEAKKA-DEAKKKAEEAKKKADE 1501
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
57-192 |
9.65e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 9.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 57 EKANFRVKKSTQELEVAESKLTEQKNKSEAANLAVESAARKREEAEGKgIEAVSKAEQDLLKKRAAAERESRNLIRAEES 136
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE-LAEAEEELEELAEELLEALRAAAELAAQLEE 404
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2486066007 137 YESALTESARAAESLEKRQEELSKANDGSSRTFRELREEVRNAGDELDETANKASA 192
Cdd:COG1196 405 LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
|
| tape_meas_nterm |
TIGR02675 |
tape measure domain; Proteins containing this domain are strictly bacterial, including ... |
303-378 |
1.35e-06 |
|
tape measure domain; Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Pssm-ID: 131723 [Multi-domain] Cd Length: 75 Bit Score: 47.68 E-value: 1.35e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2486066007 303 AAVGAGrdgDDAMQTVIGALGKMQANGKVTAEEIGQISNSGVPMLSALIDHFGMaegSFGELSSMISEGKVDLKDV 378
Cdd:TIGR02675 6 AASGAS---AEEADGALIQLSQMLASGKLRGEEINSLLEALPGALQALAKAMGV---TRGELRKMLSDGKLTADVI 75
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1528-1944 |
2.52e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1528 QQLMEAREGYSTRIAaisEAEKEHAEALKELDALRKSDSKMSVENQRKLADAQKAVDKAKAAQAKASSDKQAAASEKVAD 1607
Cdd:COG4717 91 AELQEELEELEEELE---ELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEE 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1608 AEEKLKRVREDIAKDADKDAQAHADEMVKATERVTAAEEDLAQKRKEsVAALDvtifevapqisgmlSQAAKASSAIPQV 1687
Cdd:COG4717 168 LEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEE-LEEAQ--------------EELEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1688 SSALAGMAAMAGPAGISVGVAVQGVLTAIDLvqkIGTAIGDFVSSIFAARTAMYSLTVQGLESVYEAAKTVDDLRASVVG 1767
Cdd:COG4717 233 ENELEAAALEERLKEARLLLLIAAALLALLG---LGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1768 LriswvEAQVSLRDAAWKTRLAQ--------ADVVRAQLEGVRSVADAEAALEKERKRV-------ARAAALHFDDLSLM 1832
Cdd:COG4717 310 L-----PALEELEEEELEELLAAlglppdlsPEELLELLDRIEELQELLREAEELEEELqleeleqEIAALLAEAGVEDE 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1833 YDRYRWLEyegmfdRLDLAAQITPEILALEAEVNAAKLTALANQRSASLSALQASWEQQKAAlnLQQVQANLAMQTQQLA 1912
Cdd:COG4717 385 EELRAALE------QAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEE--LEELEEELEELREELA 456
|
410 420 430
....*....|....*....|....*....|..
gi 2486066007 1913 LMQAEFGGFGQAGSLQAMNtAKLYEERSKIQQ 1944
Cdd:COG4717 457 ELEAELEQLEEDGELAELL-QELEELKAELRE 487
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1537-1658 |
8.19e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 8.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1537 YSTRIAAISEAEKEHAEALKELDALRKSDSKMSVENQRKLADaqkAVDKAKAAQAKASSDKQAAASEKVADAEEKLKRVR 1616
Cdd:PTZ00121 1265 FARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADE---AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA 1341
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2486066007 1617 EDIAKDADKDAQAHADEMVKATERVTAAEEDLAQKRKESVAA 1658
Cdd:PTZ00121 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
65-206 |
1.38e-04 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 46.38 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 65 KSTQELEVAESKLTEQKNKSEAANL--AVESAARKREEAEGKGIEAVSKAEQDLLKKRAAAERESRNLI----RAEESYE 138
Cdd:TIGR02794 117 KQKQAEEAKAKQAAEAKAKAEAEAErkAKEEAAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKAEAeakaKAEEAKA 196
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2486066007 139 SALTESARAAESLEKRQEELSKANDgSSRTFRELREEVRNAGDELDETANKASAFGDKFTAGLAEISR 206
Cdd:TIGR02794 197 KAEAAKAKAAAEAAAKAEAEAAAAA-AAEAERKADEAELGDIFGLASGSNAEKQGGARGAAAGSEVDK 263
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1748-2153 |
1.61e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1748 LESVYEAAKTVDDLRASVVGLRISWVEAQVSLRDAAWKTRLAQADVVRAQLEgvRSVADAEAALEKERKRVARAAALHfd 1827
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALE--AELAELPERLEELEERLEELRELE-- 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1828 dlslmyDRYRWL--EYEGMFDRLDLAAQITPEILALEAEVNAAKLTALANQRSAS---LSALQASWEQQKAALNLQQVQA 1902
Cdd:COG4717 163 ------EELEELeaELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELeeeLEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1903 NLAMQTQQLALMQAEFGGFGQAGSLQAMNT--AKLYEERSKIQQQMGQNFWRLSYHLTGASAADKKRIAELDKLIAEREA 1980
Cdd:COG4717 237 EAAALEERLKEARLLLLIAAALLALLGLGGslLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1981 SGAGIgktvggTDWMSFFGYGDSASNALKNSGYGDAETAlwklqelqqlQQIEQQAKELEQQIEQNKLFEEYQKQIGELT 2060
Cdd:COG4717 317 EEEEL------EELLAALGLPPDLSPEELLELLDRIEEL----------QELLREAEELEEELQLEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 2061 AE-IESLKAGASASQyEADSYREDNPAVKAALEALAKfEAGRSKEYGDVAAGRKQIVEITipEQDTYTREQVDALLsavQ 2139
Cdd:COG4717 381 VEdEEELRAALEQAE-EYQELKEELEELEEQLEELLG-ELEELLEALDEEELEEELEELE--EELEELEEELEELR---E 453
|
410
....*....|....
gi 2486066007 2140 EIGSIDARVRMLET 2153
Cdd:COG4717 454 ELAELEAELEQLEE 467
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1773-2146 |
1.43e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1773 VEAQVSLRDAAWKTRLAQADVVRAQLEgvRSVADAEAALEKERKRVAR-AAALHFDDLSLMYDRYRWLEYEGMFDRL-DL 1850
Cdd:TIGR00618 515 PARQDIDNPGPLTRRMQRGEQTYAQLE--TSEEDVYHQLTSERKQRASlKEQMQEIQQSFSILTQCDNRSKEDIPNLqNI 592
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1851 AAQITPEI---------LALEAEVNAAKLTALANQRSASLSALQASWEQQKAALNLQQVQANLAMQTQQLALMQAEfggf 1921
Cdd:TIGR00618 593 TVRLQDLTeklseaedmLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIR---- 668
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1922 GQAGSLQAMNTAKLYEERSKIQQQMGqnfWR--LSYHLTgASAADKKRIAELDKLIAEREASGAGIGKTVGgtdwmsffg 1999
Cdd:TIGR00618 669 VLPKELLASRQLALQKMQSEKEQLTY---WKemLAQCQT-LLRELETHIEEYDREFNEIENASSSLGSDLA--------- 735
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 2000 YGDSASNALKNSGYGDAETALWKLQELQQLQQIEQQA--------KELEQQIE-QNKLFEEYQKQIGELTAEIES-LKAG 2069
Cdd:TIGR00618 736 AREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAalqtgaelSHLAAEIQfFNRLREEDTHLLKTLEAEIGQeIPSD 815
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2486066007 2070 ASASQYEADSYREDNPAVKAALEALAKFEAGRSKEYGDVAAGRKQIVEITipEQDTYTREQVDALLSAVQEIGSIDA 2146
Cdd:TIGR00618 816 EDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLT--QEQAKIIQLSDKLNGINQIKIQFDG 890
|
|
| ADIP |
pfam11559 |
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at ... |
1519-1621 |
1.85e-03 |
|
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins localized at Cell-Cell Adherens Junctions.
Pssm-ID: 463295 [Multi-domain] Cd Length: 151 Bit Score: 40.76 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1519 VINSVLGAEQQLMEAREGYSTRIAAIsEAEKEHaealkeldaLRKSDSKMSVEN---QRKLAdaqkavdkakaaqakASS 1595
Cdd:pfam11559 39 VIYELLQQRDRDLEFRESLNETIRTL-EAEIER---------LQSKIERLKTQLedlERELA---------------LLQ 93
|
90 100
....*....|....*....|....*.
gi 2486066007 1596 DKQAAASEKVADAEEKLKRVREDIAK 1621
Cdd:pfam11559 94 AKERQLEKKLKTLEQKLKNEKEELQR 119
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
76-205 |
2.09e-03 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 41.80 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 76 KLTEQKNkSEAANLA---VESAARkreEAEGKGIEAVSKAEQDLLKKRAAAERESRN-----------LIRAEESYEsal 141
Cdd:pfam12072 23 SIAEAKI-GSAEELAkriIEEAKK---EAETKKKEALLEAKEEIHKLRAEAERELKErrnelqrqerrLLQKEETLD--- 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2486066007 142 tesaRAAESLEKRQEELSKandgssrtfreLREEVRNAGDELDETANKASAFGDKFTAGLAEIS 205
Cdd:pfam12072 96 ----RKDESLEKKEESLEK-----------KEKELEAQQQQLEEKEEELEELIEEQRQELERIS 144
|
|
| SLT |
pfam01464 |
Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found ... |
1300-1364 |
2.61e-03 |
|
Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems.
Pssm-ID: 396169 [Multi-domain] Cd Length: 114 Bit Score: 39.60 E-value: 2.61e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2486066007 1300 IQIESGGDPRAVNNwdSNAAkgtpsgGLLQVIEPTY-RDVRNRYPDafeglPDDRFHPLTNLVAGV 1364
Cdd:pfam01464 19 AQQESGFNPKAVSK--SGAV------GLMQIMPSTAkRLGLRVNPG-----VDDLFDPEKNIKAGT 71
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1509-1658 |
3.27e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1509 GLIGFGnSASVINSVLGAEQQLMEAREgystriaAISEAEKEHAEALKELDALRKSDSKM--SVENQRKLADAQKAVDKA 1586
Cdd:TIGR02168 659 GVITGG-SAKTNSSILERRREIEELEE-------KIEELEEKIAELEKALAELRKELEELeeELEQLRKELEELSRQISA 730
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2486066007 1587 KAAQAKASSDKQAAASEKVADAEEKLKRVREDIAKDADKDAQ------AHADEMVKATERVTAAEEDLAQKRKESVAA 1658
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEaeeelaEAEAEIEELEAQIEQLKEELKALREALDEL 808
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LT_TF-like |
cd13402 |
lytic transglycosylase-like domain of tail fiber-like proteins and similar domains; These tail ... |
1293-1392 |
3.72e-27 |
|
lytic transglycosylase-like domain of tail fiber-like proteins and similar domains; These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
Pssm-ID: 381605 [Multi-domain] Cd Length: 117 Bit Score: 107.67 E-value: 3.72e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1293 LAAMLQQIQIESGGDPRAVNNWDSNAAKGTPSGGLLQVIEPTYRDvrnrYpdAFEGlPDDRFHPLTNLVAGVGAVKRDWG 1372
Cdd:cd13402 1 LNALLRQIQTESGGNPNAINNWDSNAKAGHPSKGLMQVIPPTFAA----Y--APPG-HGNILNPLDNILAAINYAKARYG 73
|
90 100
....*....|....*....|..
gi 2486066007 1373 GPAGRW-PTKD-GYATGGVLPG 1392
Cdd:cd13402 74 SGFALAaGGGGgGYANGGIVTK 95
|
|
| HI1514 |
COG3941 |
Phage tail tape-measure protein, controls tail length [Mobilome: prophages, transposons]; |
177-565 |
3.12e-22 |
|
Phage tail tape-measure protein, controls tail length [Mobilome: prophages, transposons];
Pssm-ID: 443141 [Multi-domain] Cd Length: 833 Bit Score: 104.67 E-value: 3.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 177 RNAGDELDETANKASAFGDKftagLAEISRGALLGIGAKIGTTIMGGVqeaVSTGWETAMSLDQVSRSLSAMTSETQVAE 256
Cdd:COG3941 4 RAFKRELDGLSRSGKSAAGK----LESSFSRAAGGIAAAFGLNAAAGF---GKSGVKTAAEFEQLQISLNTLLGSAEKAA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 257 DMMVSLREVASDRPIDYTSFLEGANTLAYMGYEGEQAIKVMDNVGRAAVGAGRDGDDaMQTVIGALGKMQANGKVTAEEI 336
Cdd:COG3941 77 EALAWLKEFAADTPFELAGLTDAYKKLLAFGLDAEPTRGILTALGDAAAALGGSQEQ-LEGATLALGQMWAKGKLQGEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 337 GQISNSGVPMLSALIDHFGMAEgsfGELSSMISEGKVDLKDVIGALEEAGGADF----ENLHNSFENVNSSLENQIAMLK 412
Cdd:COG3941 156 NQLAERGVPAWKLLAKAMGVTV---AELQKMVEKGKLGAEDAIPALLDAMGKRFggaaAAQMKTLSGMVSNLGDAWTEFL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 413 DDV-----FTSIGESLQPILQDMDFEAIADTVGDVVGRIISLLPGMVEIAMTAFDNLGGVIGDVSGVLESVWGWIEKNKD 487
Cdd:COG3941 233 AAVgdsgaFDALKNGLQGLLELLDELAEDGFAKGVSAALITAFEAAKTAYEVADALGKVLAAIVGLAALGLATALAAVLL 312
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2486066007 488 ALKALA-VGVGIAVGAWKLFTGAMALHAVAIQIADKGWKGYIASTKIATAVTKLFNKATKANIIGIIATALIAVGGALV 565
Cdd:COG3941 313 AAGALAlAQALAAALAGAAAAAADAILALAVLVAAAAAAAATAGGTLGSAATALEALAAFAALSSASLEGTVSAVADAA 391
|
|
| SLT |
COG3953 |
SLT domain protein [Mobilome: prophages, transposons]; |
1269-1375 |
3.00e-18 |
|
SLT domain protein [Mobilome: prophages, transposons];
Pssm-ID: 443153 [Multi-domain] Cd Length: 325 Bit Score: 88.23 E-value: 3.00e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1269 GGGAEQWRDLASEALKR-MGYGDEHLAAMLQQIQIESGGDPRAVNNWDSNAAKGTPSGGLLQVIEPTYRDvrnrYpdAFE 1347
Cdd:COG3953 208 GGGAGGWGIDIRQAAALgVPVSEAWVDGILRIIQHESGGNPNAINLWDSNAAAGTPSKGLMQVIPPTFNA----Y--KLP 281
|
90 100
....*....|....*....|....*...
gi 2486066007 1348 GLpDDRFHPLTNLVAGVGAVKRDWGGPA 1375
Cdd:COG3953 282 GH-GNIYNPVDNILAGINYAKSRYGSSD 308
|
|
| YqbO |
COG5280 |
Phage-related minor tail protein [Mobilome: prophages, transposons]; |
170-975 |
1.46e-16 |
|
Phage-related minor tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444091 [Multi-domain] Cd Length: 962 Bit Score: 86.52 E-value: 1.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 170 RELREEVRNAGDELDETANKASAFGDKFTAGLAEISRGALLGIGAKIGTTIMGGVQeavstgWETAMSldQVSRSLSAMT 249
Cdd:COG5280 17 SGLTKEIKGFGKKFERAGEKMDRAGKKMKSIGAALTAGVTAALVAAGAAAVKAAAD------FEKAMS--TVQAVTGATG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 250 SEtqvAEDMMVSLREVASDRPidyTSFLEGANTLAYM---GYEGEQAIKVMDNVGRAAVGAGRDGDDAMQTVIGALG--K 324
Cdd:COG5280 89 EE---LEALEQLAKELGATTG---ESAAEVAEALGSVaqaGLSGDELIAVTEGALVLAAATGVDLNEAAEIVASAMNafG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 325 MQANGKVTAEEI----GQISNSGVPMLSALIDHFGMA--------------------EGSFGE-----LSSMISEGKVDL 375
Cdd:COG5280 163 LSADEASRVADLlaagAQAGNTTSDELADALKEYAPLaaalgfsleetlaalallanAGIKGSdagtaLKEFLIRLADPS 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 376 KDVIGALEEAG------GADFENLHNSFENVNSSLENQIAMLKDDVFTSIGESlqPILQDM------------------- 430
Cdd:COG5280 243 KTAAEALEELGinvfdaSGKLKGLSEILGELAKKFAGLGEAARAAVLAAIFGD--DAGRAAialllfgtdwyakltaalk 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 431 DFEAIADTVGDVV-----GRIISLLPGMVEIAMTAFDNLGGVIGDVSGVLESVWGWIEKNKDALKALAVGVGI---AVGA 502
Cdd:COG5280 321 NSAGAADEAAATMqdnlaGALESLKSALEGLAITIGETLLPALRDAVEALTGLADWFNELSPAVQELIIAIAGlvaALGP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 503 WKLFTGAMAlhavaiqiadKGWKGYIASTKIATAVTKLFNKATKANIIGIIATALIAVGGALVyfftqtetgrelwekft 582
Cdd:COG5280 401 LLLILGALI----------TGIGALAGAFGILSTALAKAKGALLAGPIGIVIAAIAALAAALV----------------- 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 583 gVLADGWDwltdklgggidwitekfsEFTGWLTDTWNNITGWVSDAWNGIVSLFQGDFTSEMREAFGVEEdspiigffft 662
Cdd:COG5280 454 -LLYKNWD------------------TIKEFLTGLWNSIKEAIGGVWDGIKTSVEGLKGAAGAALSAAAG---------- 504
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 663 irDAVISVGDFISAFWDGLVNAAQWVISVLGTvLITPFVLYWNVLSGAVEFAWENVIKPAWDAMASAAtwlwenvlspvf 742
Cdd:COG5280 505 --KAIEALAGISVDALKQGVILSGTISMLWGA-AGTEVSLKGGAAQDNVSDAASSAGDGALAIINSAE------------ 569
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 743 TWIGDKWTELSETFSSVWETIKTAVFDAFTwyidrvkanfeIVTGALNTAWTWVKDQFLIVWGFIRDLVFTAWNNAVNNV 822
Cdd:COG5280 570 QAIIGLAAALKTASTSSALQASTKAAAATK-----------AEKTILAIAMATVKGVTSATAALANAAGVILQGAIKNGI 638
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 823 KAVFTLVTTALSSAWA----WLRDMLLPVWETIRDAVFHAFENVVRGVQFVFETVTGAIS-----GAWSWLSDMLHAGWV 893
Cdd:COG5280 639 SGALDSAGATTVAKLAeeeaINEKIVELLKAAANGANKEAVANALLLDAAAKQNINGQEAilegiTAKGVQTDELQDSDA 718
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 894 WIKENVFDAMGRGlDTVEGWFQTGVDSIKSIWDGLKRKLAEPINFVIRTV--YNDGIKKVFDGVAEKvGLDARLPTIKEI 971
Cdd:COG5280 719 IQAKFQFEELSEG-AKATINAINGNGVLGGIIADGIKTNSAELKAAANELkgDINRVAAAINSLAEA-GAEEIKSEAKEA 796
|
....
gi 2486066007 972 GGFA 975
Cdd:COG5280 797 GSDK 800
|
|
| COG5412 |
COG5412 |
Phage-related protein [Mobilome: prophages, transposons]; |
147-897 |
2.02e-16 |
|
Phage-related protein [Mobilome: prophages, transposons];
Pssm-ID: 444167 [Multi-domain] Cd Length: 704 Bit Score: 85.52 E-value: 2.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 147 AAESLEKRQEELSKANDgsSRTFRELREEVRNAGDELDETANKASAFGDKFTAGLAEISRGALLGIGAKIGTTIMGGVQE 226
Cdd:COG5412 28 LTAASGGVVSAAAKAQG--SIAQLGKIGAAAGAEAALADSSLAFATLAAALGATVAGASLLLAAGGARAKGSAAAAAALG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 227 AVSTGWETAMSLDQVSRSLSAMTSETQVAEDMMVSLREVASDrpidyTSFLEGANTLAYMGYEGEQAIKVMDNVGRAAVG 306
Cdd:COG5412 106 AVAAAAKVLNGALAAAGAALAATQALAAAATGAKGEANAAAK-----AGGAAALASAGLAAAGAAAAASALAAAGAIAKA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 307 AGRDGDDAMQTVIGALGKMQANGKVTAEEIGQISNSGVPMLSALIDHFGMAEGSFGELSSMISEGKVDLKDVIGALEEAG 386
Cdd:COG5412 181 ILSASKLSGQALAGQSAAAGGALEAAAAAAAGAAAAGAAAAAATAASALLALAALQGLAAGAATGAAAGAAGAAGLGAAG 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 387 GADFEnlhnsfenvnsslenqiamlkddVFTSIGESLQPILQDMDFEAIADTVGDVVGRIISLLPGMVEIAMTAFDNLGG 466
Cdd:COG5412 261 AGAGQ-----------------------AAALLGLVAGAEASGGTAGGAVAGLAAGLAAAAGASANLGAAAAASFGASLA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 467 VIGDVSGVLESVWGWIeknKDALKALAVGVGIAVGAWKLFTGAMALHAVAIQIADkgwkgyiASTKIATAVTKLFNKatk 546
Cdd:COG5412 318 ASAGVDTAAAALAAAE---AIADGSLVAGLGSAGTVLSTLSGAVGGLEGAIGQLG-------AAGGLGSALGGLTGP--- 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 547 aniIGIIATALIAVGGALVYFFTQTETGRELWEKFtgvladgwdWLTDKLgggIDWITEKFSEFTGWLTDTWNNITGWVS 626
Cdd:COG5412 385 ---IGIVIAAIAALIAAFVALWKNSETFRNLVQGV---------WELNAI---KTAIEGVVSAIVTFISALWEAIKALLT 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 627 DAWNGIVSLFQGdftsemreafgveedspiigffftirdAVISVGDFISAFWDGLVNAAQWVISVLGTVLITPFVLYWNV 706
Cdd:COG5412 450 AIGGALPQLIAA---------------------------VWNGIVQFISAIITNLPLILQAALQLIKALIKGLWTAIKGV 502
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 707 LSGAVefaweNVIKPAWDAMASAATWLWENVLspvftwigdkWTELSETFSSVWETIKTAVFDaftwyidrvkanfeIVT 786
Cdd:COG5412 503 IQGAI-----EIITGIIQFITALLTGDWSGII----------WEGIKQLVSGIVEIIPNIVAA--------------VPQ 553
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 787 GALNTAWTWVKDQFLIVWGFIRDLVFTAWNNAVNNVKAVFTLVTTALSSAWAWLRDMLLPVWETIrdavfHAFENVVRGV 866
Cdd:COG5412 554 GGIAALWDAIKGFFPGLIEAIVQLVSNIINAIISIISSILNAAGSIISSIWNAIKSAVSSIISAK-----SIGKNIVNGL 628
|
730 740 750
....*....|....*....|....*....|.
gi 2486066007 867 QfvfETVTGAISGAWSWLSDMLHAGWVWIKE 897
Cdd:COG5412 629 W---NGIKSAAGAVTDKVKDIVGGIVDGIKG 656
|
|
| TMP_3 |
pfam20155 |
Tape measure protein; This entry represents phage tape measure proteins that are required to ... |
233-421 |
1.15e-15 |
|
Tape measure protein; This entry represents phage tape measure proteins that are required to assemble the page tail. The protein serves as a base for tail tube protein polymerization and acts as a template for tail length determination.
Pssm-ID: 466312 [Multi-domain] Cd Length: 192 Bit Score: 77.26 E-value: 1.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 233 ETAMSLDQVSRSLSAMTSETQVAEDMMVSLREVASDRPIDYTSFLEGANTLA----YMGYEGEQAIKVMDNVGRAAVGAG 308
Cdd:pfam20155 5 KTADAYTKLQARLKLATGSAEEAAEVQQQLFDIAQRTGSSLEETAELYARLAaalkELGLSQDQVLDLTEALSKALAVSG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 309 RDGDDAmQTVIGALGKMQANGKVTAEEIGQISNSGVPMLSALIDHFGMaegSFGELSSMISEGKVDLKDVIGALEEAGGA 388
Cdd:pfam20155 85 ASAEEA-SSALLQLGQALASGKLRGEEFNSVLEQAPGLLQALAKGLGV---STGELRKMASDGKLTADVFFDALLKASDE 160
|
170 180 190
....*....|....*....|....*....|...
gi 2486066007 389 dfenLHNSFENVNSSLENQIAMLKDDVFTSIGE 421
Cdd:pfam20155 161 ----LAGEFAKMPLTIGGAFTNLKNAWTKLVGE 189
|
|
| COG5283 |
COG5283 |
Phage-related tail protein [Mobilome: prophages, transposons]; |
106-761 |
2.68e-14 |
|
Phage-related tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444094 [Multi-domain] Cd Length: 747 Bit Score: 78.74 E-value: 2.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 106 IEAVSKAEQDLLKKRAAAERESRNLIRAEESYESALTESARAAESLEKRQEELSKANDGS-------SRTFRELREEVRN 178
Cdd:COG5283 16 LESAKQRVAALAQALKALEAPTRALARALERAKQAAARLQTKYNKLRQSLQRLRQALDQAgidtrqlSAAQRRLRSSLEQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 179 AGDELDETANK---ASAFGDKFTAGLAEISRGA-LLGIGAKIGTTIMGGVQEAVStgWETAMSldQVSRSLSAMTSETQV 254
Cdd:COG5283 96 TNRQLERQQQRlarLGARQDRLKAARARLQRLAgAGAAAAAIGAALAASVKPAID--FEDAMA--DVAATVDLDKSSEQF 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 255 AEdMMVSLREVASDRPIDYTSFLEGANTLAYMGYEGEQAIKVMDNVGRAAVGAGRDGDDAMQtvigALGKMQANGKVTAE 334
Cdd:COG5283 172 KA-LGKQARELSAQTPQSADDIAAGQAALAQAGVSAEDILAFTPTAAKLATAFDTDAEEAAE----IAAKILNAFKLPAD 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 335 EIGQISN-----------------SGVPMLSALIDHFGMAEGSFGELSSMISEGKVD-------LKDVIGALEEAGGA-- 388
Cdd:COG5283 247 DVERLGDalnyagnngatsladlaDALPYVGPVAKALGVSGKEAAALGAALADAGIEgeeagtaLRNMLTRLTSPTKAaa 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 389 -DFENLHNSFENVNSSLENQIAMLKDDVFTSIGESLQPILQ---DMDFEAIADTVGDVVGR-----IISL---------- 449
Cdd:COG5283 327 kALKKLGIDTQDSKGNLRGLAKILAKQMQKDAQGALAELLKalkKLDAAKRAAALKQLFGEeavsaLAPLlqngdelrkq 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 450 -----------------------LPGMVEIAMTAFDNLGGVIGD------------VSGVLESVWGWIEKNKDALKALAV 494
Cdd:COG5283 407 lavaeaaaaqgsmdkeaakrtdtLAGQLKLLKNALENLGISIGEallpalrelaqaLTPVVGKLADWAKANPGLIKTIVK 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 495 GVG------IAVGAWKLFTGAM-----ALHAVAIQIADKGWKGYIAST------------KIATAVTKLFNKATKANIIG 551
Cdd:COG5283 487 VAAalaglkAALGALRLALALLlsplaALKAAAALLGGGGLGGAGRGAgalaalggakglKLAGGAVLWLGRALLANPIG 566
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 552 IIATAlIAVGGALVYFFtqtetgrelWEKFTGVLADGWDWLTDKLGGGIDWITEKfseftgwltdtwnnITGWVSDAWNG 631
Cdd:COG5283 567 LVIAA-IAAAAYLIYKY---------WEPIKAFFKGVWEGIKAAFSPAWEAIKAL--------------ISNWLGPVWDG 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 632 IVslFQGDFTSEMREAFGVEEDSPIIGFFFTIrdAVISVGDFISAFWDGLVNAAQWVISVLGTVLITPFVlywnVLSGAV 711
Cdd:COG5283 623 LA--IAGAGAGEAAAAAAVAGAQAAAGGAVTA--AQLGAGAKNGAGATGGGGALLGLAGTGRALFAAGGG----AAAVGG 694
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 2486066007 712 EFAWENVIKPAWDAMASAATWLWENVLSPVFTWIGDKWTELSETFSSVWE 761
Cdd:COG5283 695 DGGGAIAGSALSRSAGIAAFGAQAAGLAEKLGGLLGVQEAILEGTQGASQ 744
|
|
| COG5412 |
COG5412 |
Phage-related protein [Mobilome: prophages, transposons]; |
294-960 |
5.91e-11 |
|
Phage-related protein [Mobilome: prophages, transposons];
Pssm-ID: 444167 [Multi-domain] Cd Length: 704 Bit Score: 67.80 E-value: 5.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 294 IKVMDNVGRAAVGAGRDGDDAMQTVIGALGKMQANGKVTAEEIGQISNSGVPMLSALIDHFGMAEGSFGELSSMISEGKV 373
Cdd:COG5412 11 AASAALLLAQAKAADSELTAASGGVVSAAAKAQGSIAQLGKIGAAAGAEAALADSSLAFATLAAALGATVAGASLLLAAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 374 DLKDVIGALEEAGGADFENLhnsfenvnsslenqiAMLKDDVFTSIGESLQPILQDMDFEAIADTVGDVVGRIISLLPGM 453
Cdd:COG5412 91 GARAKGSAAAAAALGAVAAA---------------AKVLNGALAAAGAALAATQALAAAATGAKGEANAAAKAGGAAALA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 454 VEIAMTAFDNLGGVIGDVSGVLESVWGWIEKNKDALKALAVGVGIAVGAWKLFTGAMALHAVAIQIADKGwkgyIASTKI 533
Cdd:COG5412 156 SAGLAAAGAAAAASALAAAGAIAKAILSASKLSGQALAGQSAAAGGALEAAAAAAAGAAAAGAAAAAATA----ASALLA 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 534 ATAVTKLFNKATKANIIGIIATALIAVGGALVYFFTQTETGRELWEKFTGVLADGWDWLTDKL---GGGIDWITEKFSEF 610
Cdd:COG5412 232 LAALQGLAAGAATGAAAGAAGAAGLGAAGAGAGQAAALLGLVAGAEASGGTAGGAVAGLAAGLaaaAGASANLGAAAAAS 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 611 TGWLTDTWNNItGWVSDAWNGIVSLFQGDFTSEMREAFGVEEDspIIGFFFTIRDAV--ISVGDFISAFWDGLVNAAQWV 688
Cdd:COG5412 312 FGASLAASAGV-DTAAAALAAAEAIADGSLVAGLGSAGTVLST--LSGAVGGLEGAIgqLGAAGGLGSALGGLTGPIGIV 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 689 ISVLGTvLITPFVLYWN---VLSGAVEFAWENvikpawDAMASAATWLWE---NVLSPVFTWIGDKWTE----LSETFSS 758
Cdd:COG5412 389 IAAIAA-LIAAFVALWKnseTFRNLVQGVWEL------NAIKTAIEGVVSaivTFISALWEAIKALLTAiggaLPQLIAA 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 759 VWETIKTAVFDAFTWYIDRVKANFEIVTGALNTAWTWVKdqflivwgfirdlvfTAWNNAVNNVKAVFTLVTTALSSAWA 838
Cdd:COG5412 462 VWNGIVQFISAIITNLPLILQAALQLIKALIKGLWTAIK---------------GVIQGAIEIITGIIQFITALLTGDWS 526
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 839 wlrdmlLPVWETIRDAVFHAFENVVRGVQFVFETVTGAIsgawswlsdmlhagWVWIKENVFDAMGRGLDTVEGWFQTGV 918
Cdd:COG5412 527 ------GIIWEGIKQLVSGIVEIIPNIVAAVPQGGIAAL--------------WDAIKGFFPGLIEAIVQLVSNIINAII 586
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 2486066007 919 DSIKSIWDGLKRKLAEPINFVIRTVYN----------------DGIKKVFDGVAEKVG 960
Cdd:COG5412 587 SIISSILNAAGSIISSIWNAIKSAVSSiisaksigknivnglwNGIKSAAGAVTDKVK 644
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
57-196 |
4.93e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.55 E-value: 4.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 57 EKANFRVKKSTQELEVAESKLTEQKNKSEAANLAVESAaRKREEAEGKGIEAVSKAEQdlLKKRAAAERESRNLIR---- 132
Cdd:PTZ00121 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK-KKADEAKKKAEEDKKKADE--LKKAAAAKKKADEAKKkaee 1429
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2486066007 133 ---AEESYESAltESARAAESLEKRQEELSKANDGS-----SRTFRELR---EEVRNAgDELDETANKASAFGDK 196
Cdd:PTZ00121 1430 kkkADEAKKKA--EEAKKADEAKKKAEEAKKAEEAKkkaeeAKKADEAKkkaEEAKKA-DEAKKKAEEAKKKADE 1501
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
64-187 |
4.77e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.00 E-value: 4.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 64 KKSTQELEVAES--KLTEQKNKSEAANLAvESAARKREEAEGKGIEAVSKAEQDLLK---KRAAAERESRNLIRAEESYE 138
Cdd:PTZ00121 1289 KKKADEAKKAEEkkKADEAKKKAEEAKKA-DEAKKKAEEAKKKADAAKKKAEEAKKAaeaAKAEAEAAADEAEAAEEKAE 1367
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2486066007 139 SA---LTESARAAESLEKRQEELSKANDGSSRTfrelrEEVRNAGDELDETA 187
Cdd:PTZ00121 1368 AAekkKEEAKKKADAAKKKAEEKKKADEAKKKA-----EEDKKKADELKKAA 1414
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
57-190 |
9.59e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 9.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 57 EKANFRVKKSTQELEVAESKLTEQKNKSEAANLAVESAARKREEAEGKGIEAVSKAEQ----DLLKKRAAAEREsrnliR 132
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEkkkaDEAKKKAEEDKK-----K 1406
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2486066007 133 AEESYESAltESARAAESLEKRQEELSKANDGSSRTfrelrEEVRNAgDELDETANKA 190
Cdd:PTZ00121 1407 ADELKKAA--AAKKKADEAKKKAEEKKKADEAKKKA-----EEAKKA-DEAKKKAEEA 1456
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
56-192 |
1.29e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 1.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 56 VEKANFRVKKSTQELEVAES--KLTEQKNKSEAANLAvESAARKREEAEgKGIEAVSKAEQ----DLLKKRAAAERESRN 129
Cdd:PTZ00121 1410 LKKAAAAKKKADEAKKKAEEkkKADEAKKKAEEAKKA-DEAKKKAEEAK-KAEEAKKKAEEakkaDEAKKKAEEAKKADE 1487
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2486066007 130 L-IRAEESYESAltESARAAESLEKRQEELSKANDgsSRTFRELR--EEVRNAgDELDETANKASA 192
Cdd:PTZ00121 1488 AkKKAEEAKKKA--DEAKKAAEAKKKADEAKKAEE--AKKADEAKkaEEAKKA-DEAKKAEEKKKA 1548
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
23-183 |
2.40e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 2.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 23 DKAISQPIRKASKDagdalSKGVGDGADAAAKAVEKANfRVKKSTQELEVAESKLT----EQKNKSEAANLAvESAARKR 98
Cdd:PTZ00121 1618 AKIKAEELKKAEEE-----KKKVEQLKKKEAEEKKKAE-ELKKAEEENKIKAAEEAkkaeEDKKKAEEAKKA-EEDEKKA 1690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 99 EEAEGKGIEAVSKAEQdLLKKRAAAERESRNLIRAEESYESALTESARAAESLEKRQEELsKANDGSSRTFRELREEVRN 178
Cdd:PTZ00121 1691 AEALKKEAEEAKKAEE-LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA-KKDEEEKKKIAHLKKEEEK 1768
|
....*
gi 2486066007 179 AGDEL 183
Cdd:PTZ00121 1769 KAEEI 1773
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
57-182 |
2.72e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 2.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 57 EKANFRVKKSTQELEVAE-SKLTEQKNKSEAANLAVEsaARKREEAegKGIEAVSKAEQDllkKRAAAERESRNLIRAEE 135
Cdd:PTZ00121 1096 AFGKAEEAKKTETGKAEEaRKAEEAKKKAEDARKAEE--ARKAEDA--RKAEEARKAEDA---KRVEIARKAEDARKAEE 1168
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2486066007 136 SY---ESALTESARAAESLeKRQEELSKANDG----SSRTFRELR--EEVRNAGDE 182
Cdd:PTZ00121 1169 ARkaeDAKKAEAARKAEEV-RKAEELRKAEDArkaeAARKAEEERkaEEARKAEDA 1223
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
56-190 |
7.03e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 7.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 56 VEKANFRVKKSTQELEVAES--KLTEQKNKSEAANLAVESAaRKREEAEGKGIEAvSKAEQdlLKKRAAAERESRNLI-- 131
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADElkKAAAAKKKADEAKKKAEEK-KKADEAKKKAEEA-KKADE--AKKKAEEAKKAEEAKkk 1465
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2486066007 132 -----RAEESYESAltESARAAESLEKRQEELSKANDgssrtfrELR--EEVRNAGDELD--ETANKA 190
Cdd:PTZ00121 1466 aeeakKADEAKKKA--EEAKKADEAKKKAEEAKKKAD-------EAKkaAEAKKKADEAKkaEEAKKA 1524
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
57-192 |
9.65e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 9.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 57 EKANFRVKKSTQELEVAESKLTEQKNKSEAANLAVESAARKREEAEGKgIEAVSKAEQDLLKKRAAAERESRNLIRAEES 136
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE-LAEAEEELEELAEELLEALRAAAELAAQLEE 404
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2486066007 137 YESALTESARAAESLEKRQEELSKANDGSSRTFRELREEVRNAGDELDETANKASA 192
Cdd:COG1196 405 LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
|
| tape_meas_nterm |
TIGR02675 |
tape measure domain; Proteins containing this domain are strictly bacterial, including ... |
303-378 |
1.35e-06 |
|
tape measure domain; Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Pssm-ID: 131723 [Multi-domain] Cd Length: 75 Bit Score: 47.68 E-value: 1.35e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2486066007 303 AAVGAGrdgDDAMQTVIGALGKMQANGKVTAEEIGQISNSGVPMLSALIDHFGMaegSFGELSSMISEGKVDLKDV 378
Cdd:TIGR02675 6 AASGAS---AEEADGALIQLSQMLASGKLRGEEINSLLEALPGALQALAKAMGV---TRGELRKMLSDGKLTADVI 75
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1528-1944 |
2.52e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1528 QQLMEAREGYSTRIAaisEAEKEHAEALKELDALRKSDSKMSVENQRKLADAQKAVDKAKAAQAKASSDKQAAASEKVAD 1607
Cdd:COG4717 91 AELQEELEELEEELE---ELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEE 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1608 AEEKLKRVREDIAKDADKDAQAHADEMVKATERVTAAEEDLAQKRKEsVAALDvtifevapqisgmlSQAAKASSAIPQV 1687
Cdd:COG4717 168 LEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEE-LEEAQ--------------EELEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1688 SSALAGMAAMAGPAGISVGVAVQGVLTAIDLvqkIGTAIGDFVSSIFAARTAMYSLTVQGLESVYEAAKTVDDLRASVVG 1767
Cdd:COG4717 233 ENELEAAALEERLKEARLLLLIAAALLALLG---LGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1768 LriswvEAQVSLRDAAWKTRLAQ--------ADVVRAQLEGVRSVADAEAALEKERKRV-------ARAAALHFDDLSLM 1832
Cdd:COG4717 310 L-----PALEELEEEELEELLAAlglppdlsPEELLELLDRIEELQELLREAEELEEELqleeleqEIAALLAEAGVEDE 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1833 YDRYRWLEyegmfdRLDLAAQITPEILALEAEVNAAKLTALANQRSASLSALQASWEQQKAAlnLQQVQANLAMQTQQLA 1912
Cdd:COG4717 385 EELRAALE------QAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEE--LEELEEELEELREELA 456
|
410 420 430
....*....|....*....|....*....|..
gi 2486066007 1913 LMQAEFGGFGQAGSLQAMNtAKLYEERSKIQQ 1944
Cdd:COG4717 457 ELEAELEQLEEDGELAELL-QELEELKAELRE 487
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
62-206 |
3.18e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 3.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 62 RVKKSTQELEVAESKLTEQKNKSEAANLAVESAARKREEAEGKgIEAVSKAEQDLLKKRAAAERESRNLIRAEESYESAL 141
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE-LEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2486066007 142 TESARAAESLEKRQEELSKANDGSSRTFRELREEVRNAGDELDETANKASAFGDKFTAGLAEISR 206
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
56-192 |
3.18e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 3.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 56 VEKANFRVKKSTQELEVAESKLTEQKNKSEAANLAVESA------ARKREEAEGKGIEAVSKAEQDLLKKRAAAERESRN 129
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAqaeeyeLLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2486066007 130 LIRAEESYESALTESARAAESLEKRQEELSKANDGSSRTFRELREEVRNAGDELDETANKASA 192
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
63-208 |
3.78e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 3.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 63 VKKSTQELEVAES---------KLTEQKNKSEAANLAvESAARKREEAEGKGIEAVSKAEQdllKKRAAAERESRNLIRA 133
Cdd:PTZ00121 1449 AKKKAEEAKKAEEakkkaeeakKADEAKKKAEEAKKA-DEAKKKAEEAKKKADEAKKAAEA---KKKADEAKKAEEAKKA 1524
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2486066007 134 EESYESaltESARAAESLeKRQEELSKANdgssrtfrELR--EEVRNAgDELDETANKASAFGDKFTAGL-AEISRGA 208
Cdd:PTZ00121 1525 DEAKKA---EEAKKADEA-KKAEEKKKAD--------ELKkaEELKKA-EEKKKAEEAKKAEEDKNMALRkAEEAKKA 1589
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
63-206 |
4.74e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 4.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 63 VKKSTQEL---EVAESKLTEQKNKSEAANLAVESAARKREEAEGKGIEAVSKAEQDLLKKRAAAERESRNLIRAEEsYES 139
Cdd:PTZ00121 1631 EKKKVEQLkkkEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE-LKK 1709
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2486066007 140 ALTESARAAESLEKRQEElskaNDGSSRTFRELREEVRNAGDEL--DETANKASAFGDKFTAGLAEISR 206
Cdd:PTZ00121 1710 KEAEEKKKAEELKKAEEE----NKIKAEEAKKEAEEDKKKAEEAkkDEEEKKKIAHLKKEEEKKAEEIR 1774
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
64-241 |
7.85e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 7.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 64 KKSTQELEVAES--KLTEQKNKSEAANLAVESAARKREEAEGKGIEAVSKAEQdlLKKraaaeRESRNLIRAEESYESAl 141
Cdd:PTZ00121 1668 KKAEEDKKKAEEakKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE--LKK-----AEEENKIKAEEAKKEA- 1739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 142 TESARAAESLEKRQEE------LSKANDGSSRTFRELREEVrnAGDELDETANKASAFGDKFTAGLaeISRGALLGIGAK 215
Cdd:PTZ00121 1740 EEDKKKAEEAKKDEEEkkkiahLKKEEEKKAEEIRKEKEAV--IEEELDEEDEKRRMEVDKKIKDI--FDNFANIIEGGK 1815
|
170 180
....*....|....*....|....*..
gi 2486066007 216 IGTTIMGGVQEA-VSTGWETAMSLDQV 241
Cdd:PTZ00121 1816 EGNLVINDSKEMeDSAIKEVADSKNMQ 1842
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
63-208 |
8.18e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 8.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 63 VKKSTQELEVAESKLTEQKNKSEAANLAVESaaRKREEAegKGIEAVSKAEQ-----DLLK----KRAAAERESRNLIRA 133
Cdd:PTZ00121 1139 ARKAEEARKAEDAKRVEIARKAEDARKAEEA--RKAEDA--KKAEAARKAEEvrkaeELRKaedaRKAEAARKAEEERKA 1214
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2486066007 134 EES--YESA-LTESARAAESLEKRQEELSKAndgssrtfrelrEEVRNAGDELDETANKASAFGDKFTAGLAEISRGA 208
Cdd:PTZ00121 1215 EEArkAEDAkKAEAVKKAEEAKKDAEEAKKA------------EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA 1280
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
57-190 |
1.07e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 57 EKANFRVKKSTQELEVAESKLTEQKNKSEAANlavESAARKREEAEG--KGIEAVSKAEQDLLKKRAAAERESRNLIRAE 134
Cdd:PTZ00121 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK---AEAEAAADEAEAaeEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2486066007 135 ESYESAlTESARAAESLEKRQEELSKANDGSSRTfrelrEEVRNAgDELDETANKA 190
Cdd:PTZ00121 1395 EAKKKA-EEDKKKADELKKAAAAKKKADEAKKKA-----EEKKKA-DEAKKKAEEA 1443
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
56-187 |
1.64e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 56 VEKANFRVKKSTQELEVAESKLTEQKNKSE-----AANLAVEsAARKREEAEGKGIEAVSKAEQ--DLLKKRAAAERESR 128
Cdd:PRK02224 511 IERLEERREDLEELIAERRETIEEKRERAEelrerAAELEAE-AEEKREAAAEAEEEAEEAREEvaELNSKLAELKERIE 589
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2486066007 129 NLIRAEESYEsALTESARAAESLEKRQEELSKANDGSSRTFRELREEVRNAGDELDETA 187
Cdd:PRK02224 590 SLERIRTLLA-AIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR 647
|
|
| MltE |
COG0741 |
Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin ... |
1272-1364 |
2.08e-05 |
|
Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440504 [Multi-domain] Cd Length: 244 Bit Score: 48.45 E-value: 2.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1272 AEQWRDLASEALKRMGYGDEHLAAMlqqIQIESGGDPRAVNnwdsnaakgtPSG--GLLQVIEPTYRDVRNRYPDAFEgl 1349
Cdd:COG0741 100 PLPYLPLIEEAAKKYGVDPALVLAL---IRQESAFNPNAVS----------PAGarGLMQLMPATARRLGLKLGLGPS-- 164
|
90
....*....|....*
gi 2486066007 1350 PDDRFHPLTNLVAGV 1364
Cdd:COG0741 165 PDDLFDPETNIRAGA 179
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
57-192 |
5.53e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 5.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 57 EKANFRVKKSTQELEVAESKLTEQKNKSEAANLAVEsAARKREEAEGKGIEAVSKAEQDLLKKRAAAERESRNLIRAEES 136
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELE-ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2486066007 137 YESALTESARAAESLEKRQEELSKANDGSSRTFRELREEVRNAGDELDETANKASA 192
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
62-191 |
7.58e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 7.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 62 RVKKSTQELEVAESKLTEQKNKSEAANLAVESAARKREEAEGKGIEAVSKAEQDLLKKRAAAERESRNLIRA-------- 133
Cdd:COG4913 296 ELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALlaalglpl 375
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2486066007 134 ---EESYESALTESARAAESLEKRQEELSKANDGSSRTFRELREEVRNAGDELDETANKAS 191
Cdd:COG4913 376 pasAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKS 436
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1537-1658 |
8.19e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 8.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1537 YSTRIAAISEAEKEHAEALKELDALRKSDSKMSVENQRKLADaqkAVDKAKAAQAKASSDKQAAASEKVADAEEKLKRVR 1616
Cdd:PTZ00121 1265 FARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADE---AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA 1341
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2486066007 1617 EDIAKDADKDAQAHADEMVKATERVTAAEEDLAQKRKESVAA 1658
Cdd:PTZ00121 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
65-206 |
1.38e-04 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 46.38 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 65 KSTQELEVAESKLTEQKNKSEAANL--AVESAARKREEAEGKGIEAVSKAEQDLLKKRAAAERESRNLI----RAEESYE 138
Cdd:TIGR02794 117 KQKQAEEAKAKQAAEAKAKAEAEAErkAKEEAAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKAEAeakaKAEEAKA 196
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2486066007 139 SALTESARAAESLEKRQEELSKANDgSSRTFRELREEVRNAGDELDETANKASAFGDKFTAGLAEISR 206
Cdd:TIGR02794 197 KAEAAKAKAAAEAAAKAEAEAAAAA-AAEAERKADEAELGDIFGLASGSNAEKQGGARGAAAGSEVDK 263
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
57-190 |
1.50e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 57 EKANFRVKKSTQELEVAESKLTEQKNKSEAANLAVESAARKREEAEGKGiEAVSKAEQDLLKKRAAAERESRNLIRAEES 136
Cdd:PTZ00121 1574 EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA-EELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2486066007 137 YESALTESARAAESLEKRQEELSKANDgssrtFRELREEVRNAGDELDETANKA 190
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEE-----AKKAEEDEKKAAEALKKEAEEA 1701
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1748-2153 |
1.61e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1748 LESVYEAAKTVDDLRASVVGLRISWVEAQVSLRDAAWKTRLAQADVVRAQLEgvRSVADAEAALEKERKRVARAAALHfd 1827
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALE--AELAELPERLEELEERLEELRELE-- 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1828 dlslmyDRYRWL--EYEGMFDRLDLAAQITPEILALEAEVNAAKLTALANQRSAS---LSALQASWEQQKAALNLQQVQA 1902
Cdd:COG4717 163 ------EELEELeaELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELeeeLEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1903 NLAMQTQQLALMQAEFGGFGQAGSLQAMNT--AKLYEERSKIQQQMGQNFWRLSYHLTGASAADKKRIAELDKLIAEREA 1980
Cdd:COG4717 237 EAAALEERLKEARLLLLIAAALLALLGLGGslLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1981 SGAGIgktvggTDWMSFFGYGDSASNALKNSGYGDAETAlwklqelqqlQQIEQQAKELEQQIEQNKLFEEYQKQIGELT 2060
Cdd:COG4717 317 EEEEL------EELLAALGLPPDLSPEELLELLDRIEEL----------QELLREAEELEEELQLEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 2061 AE-IESLKAGASASQyEADSYREDNPAVKAALEALAKfEAGRSKEYGDVAAGRKQIVEITipEQDTYTREQVDALLsavQ 2139
Cdd:COG4717 381 VEdEEELRAALEQAE-EYQELKEELEELEEQLEELLG-ELEELLEALDEEELEEELEELE--EELEELEEELEELR---E 453
|
410
....*....|....
gi 2486066007 2140 EIGSIDARVRMLET 2153
Cdd:COG4717 454 ELAELEAELEQLEE 467
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
56-182 |
1.90e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 56 VEKANfRVKKSTQELEVAESKLTEQKNKSEA-ANLAVESA----------------------------ARKREEAEGKGi 106
Cdd:PTZ00121 1545 KKKAD-ELKKAEELKKAEEKKKAEEAKKAEEdKNMALRKAeeakkaeearieevmklyeeekkmkaeeAKKAEEAKIKA- 1622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 107 EAVSKAEQ-----DLLKKRAAAER---------ESRNLIRAEESYESAlTESARAAESLEKRQEELSKANDGSSRTFREL 172
Cdd:PTZ00121 1623 EELKKAEEekkkvEQLKKKEAEEKkkaeelkkaEEENKIKAAEEAKKA-EEDKKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
|
170
....*....|..
gi 2486066007 173 R--EEVRNAGDE 182
Cdd:PTZ00121 1702 KkaEELKKKEAE 1713
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
57-192 |
2.17e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 57 EKANFRVKKSTQELEVAESKLTEQKNKSEAANLA--VESAARKREEAEGKGIEAVSKAEQdlLKKRAAAEResrnliRAE 134
Cdd:PTZ00121 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKAdeLKKAEEKKKADEAKKAEEKKKADE--AKKKAEEAK------KAD 1318
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2486066007 135 ESYESAlTESARAAESLEKRQEELSKANDGSsrtfrelREEVRNAGDELDETANKASA 192
Cdd:PTZ00121 1319 EAKKKA-EEAKKKADAAKKKAEEAKKAAEAA-------KAEAEAAADEAEAAEEKAEA 1368
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
68-192 |
4.02e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 68 QELEVAESKLTEQKNKSEAANLAVESAARKREEAEGKgIEAVS----KAEQDLLKKR-----AAAERESRNLIRAEESYE 138
Cdd:COG1579 31 AELAELEDELAALEARLEAAKTELEDLEKEIKRLELE-IEEVEarikKYEEQLGNVRnnkeyEALQKEIESLKRRISDLE 109
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2486066007 139 SALTESARAAESLEKRQEELSKANDGSSRTFRELREEVRNAGDELDETANKASA 192
Cdd:COG1579 110 DEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
|
| LT-like |
cd00254 |
lytic transglycosylase(LT)-like domain; Members include the soluble and insoluble ... |
1293-1364 |
4.44e-04 |
|
lytic transglycosylase(LT)-like domain; Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
Pssm-ID: 381594 [Multi-domain] Cd Length: 111 Bit Score: 41.82 E-value: 4.44e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2486066007 1293 LAAMlqqIQIESGGDPRAVNnwdsnaakgtPSG--GLLQVIEPTYRDVRNRypdafegLPDDRFHPLTNLVAGV 1364
Cdd:cd00254 4 VLAV---IRVESGFNPRAVS----------PAGarGLMQLMPGTARDLGRR-------GVDDLFDPEENIRAGA 57
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
69-192 |
4.84e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 4.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 69 ELEVAESKLTEQKNKSEAANLAVESAARKREEAEGK------GIEAVSKAEQDLLKKRAAAERESRNLIRAEESYESALT 142
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAEleelrlELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2486066007 143 ESARAAESLEKRQEELSKANDGSSRTFRELREEVRNAGDELDETANKASA 192
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
31-190 |
4.99e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 4.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 31 RKASKDAGDALSKGvgdgadAAAKAVEKAnfRVKKSTQELEVAESKLTEQKNKSEAANLAVE------------SAARKR 98
Cdd:PTZ00121 1570 KKAEEDKNMALRKA------EEAKKAEEA--RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEelkkaeeekkkvEQLKKK 1641
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 99 EEAEGKGIEAVSKAEQDL------LKKRAAAERESRNLIRAEESYESALTESARAAESLEKRQEELSKANDGSSRTFREL 172
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENkikaaeEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
170 180
....*....|....*....|....*
gi 2486066007 173 R--EEVRN-----AGDELDETANKA 190
Cdd:PTZ00121 1722 KkaEEENKikaeeAKKEAEEDKKKA 1746
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1526-1946 |
7.97e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 7.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1526 AEQQLMEAREGYSTRIAAISEAEKEHAEALKELDALRK---------SDSKMSVENQRKLADAQKAVDKAKAAQAKASSD 1596
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAelaeaeealLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1597 KQAAASEKVADAEEKLKRVREDIAKDAD---------KDAQAHADEMVKATERVTAAEEDLAQKRKE----------SVA 1657
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEalaeleeeeEEEEEALEEAAEEEAELEEEEEALLELLAElleeaalleaALA 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1658 ALDVTIFEVAPQISGMLSQAAKASSAIPQVSSALAGMAAMAGPAGISVGV-------AVQGVLTAIDLVQKIGTAIGDFV 1730
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveaayeAALEAALAAALQNIVVEDDEVAA 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1731 SSI-FAARTAMYSLTVQGLESVYEAAKTVDDLRASVVGLRISWVEAQVSLRDAAWkTRLAQADVVRAQLEGVRSVADAEA 1809
Cdd:COG1196 561 AAIeYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY-YVLGDTLLGRTLVAARLEAALRRA 639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1810 ALEKERKRVARAAALHFDDLSLMYDRYRWLEYEGMFDRLDLAAQITPEILALEAEVNAAKLTALANQRSASLSALQASWE 1889
Cdd:COG1196 640 VTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 2486066007 1890 QQKAALNLQQVQANLAMQTQQLALMQAEFGGFGQAGSLQAMNTAKLYEERSKIQQQM 1946
Cdd:COG1196 720 ELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1773-2146 |
1.43e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1773 VEAQVSLRDAAWKTRLAQADVVRAQLEgvRSVADAEAALEKERKRVAR-AAALHFDDLSLMYDRYRWLEYEGMFDRL-DL 1850
Cdd:TIGR00618 515 PARQDIDNPGPLTRRMQRGEQTYAQLE--TSEEDVYHQLTSERKQRASlKEQMQEIQQSFSILTQCDNRSKEDIPNLqNI 592
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1851 AAQITPEI---------LALEAEVNAAKLTALANQRSASLSALQASWEQQKAALNLQQVQANLAMQTQQLALMQAEfggf 1921
Cdd:TIGR00618 593 TVRLQDLTeklseaedmLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIR---- 668
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1922 GQAGSLQAMNTAKLYEERSKIQQQMGqnfWR--LSYHLTgASAADKKRIAELDKLIAEREASGAGIGKTVGgtdwmsffg 1999
Cdd:TIGR00618 669 VLPKELLASRQLALQKMQSEKEQLTY---WKemLAQCQT-LLRELETHIEEYDREFNEIENASSSLGSDLA--------- 735
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 2000 YGDSASNALKNSGYGDAETALWKLQELQQLQQIEQQA--------KELEQQIE-QNKLFEEYQKQIGELTAEIES-LKAG 2069
Cdd:TIGR00618 736 AREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAalqtgaelSHLAAEIQfFNRLREEDTHLLKTLEAEIGQeIPSD 815
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2486066007 2070 ASASQYEADSYREDNPAVKAALEALAKFEAGRSKEYGDVAAGRKQIVEITipEQDTYTREQVDALLSAVQEIGSIDA 2146
Cdd:TIGR00618 816 EDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLT--QEQAKIIQLSDKLNGINQIKIQFDG 890
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
62-204 |
1.48e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 62 RVKKSTQELEVAESKLTEQKNKSEAANLAVESAARKREEaegkgIEAVSKAEQDLLKKRAAAERESRNLIRA-------- 133
Cdd:PRK02224 214 ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREE-----LETLEAEIEDLRETIAETEREREELAEEvrdlrerl 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 134 ---EESYESALTESAR---AAESLEKRQEELSKANDGSSRTFRELR------------------------EEVRNAGDEL 183
Cdd:PRK02224 289 eelEEERDDLLAEAGLddaDAEAVEARREELEDRDEELRDRLEECRvaaqahneeaeslredaddleeraEELREEAAEL 368
|
170 180
....*....|....*....|.
gi 2486066007 184 DETANKASAFGDKFTAGLAEI 204
Cdd:PRK02224 369 ESELEEAREAVEDRREEIEEL 389
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
56-200 |
1.63e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.66 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 56 VEKANFRVKKSTQELEVAESKLTEQKNKSEAANlavESAARKREEAEgkgieavsKAEQDLLKKRAAAERESRNLI-RAE 134
Cdd:PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKA---EEAEALLKEAE--------KLKEELEEKKEKLQEEEDKLLeEAE 572
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2486066007 135 ESYESALTESARAAESLEKRQEELSKAnDGSSRTFREL---REEVRNAGDELDETANKASAFGDKFTAG 200
Cdd:PRK00409 573 KEAQQAIKEAKKEADEIIKELRQLQKG-GYASVKAHELieaRKRLNKANEKKEKKKKKQKEKQEELKVG 640
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
64-375 |
1.68e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.97 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 64 KKSTQELEVAESKLTEQKNKSEAANLAVESAARKREEAEGKGIEAVSKAEQdLLKKRAAAERESRNLIRAEESYESALTE 143
Cdd:COG4372 69 EQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEE-LQKERQDLEQQRKQLEAQIAELQSEIAE 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 144 SARAAESLEKRQEELSKANDGSSRTFREL-REEVRNAGDELDETANKASAFGDKFTAGLAEISRGALLGIGAKIGTTIMg 222
Cdd:COG4372 148 REEELKELEEQLESLQEELAALEQELQALsEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDS- 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 223 gvqEAVSTGWETAMSLDQVSRSLSAMTSETQVAEDMMVSLREVASDRPIDYTSFLEGANtlaymgYEGEQAIKVMDNVGR 302
Cdd:COG4372 227 ---LEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAA------LELEALEEAALELKL 297
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2486066007 303 AAVGAGRDGDDAMQTVIGALGKMQANGKVTAEEIGQISNSGVPMLSALIDHFGMAEGSFGELSSMISEGKVDL 375
Cdd:COG4372 298 LALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
56-192 |
1.80e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 56 VEKANFRVKKSTQELEVAESKLTEQKNKSEAANLAVESAARKREEAEGKgIEAVSKAEQDLLKKRAAAERESRNLIRAEE 135
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ-KQILRERLANLERQLEELEAQLEELESKLD 333
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2486066007 136 SYESALTESARAAESLEKRQEELSKAND-------GSSRTFRELREEVRNAGDELDETANKASA 192
Cdd:TIGR02168 334 ELAEELAELEEKLEELKEELESLEAELEeleaeleELESRLEELEEQLETLRSKVAQLELQIAS 397
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
62-192 |
1.80e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 62 RVKKSTQELEVAESKLTE---QKNKSEAANLAVESAARKREEAEGKgIEAVSKAEQ--DLLKKRAAAERESRNLIRAEES 136
Cdd:COG4717 72 ELKELEEELKEAEEKEEEyaeLQEELEELEEELEELEAELEELREE-LEKLEKLLQllPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2486066007 137 YESALTESARAAESLEKRQEELSKANDGSSRTFRELREEVRNAGDELDETANKASA 192
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
|
| ADIP |
pfam11559 |
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at ... |
1519-1621 |
1.85e-03 |
|
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins localized at Cell-Cell Adherens Junctions.
Pssm-ID: 463295 [Multi-domain] Cd Length: 151 Bit Score: 40.76 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1519 VINSVLGAEQQLMEAREGYSTRIAAIsEAEKEHaealkeldaLRKSDSKMSVEN---QRKLAdaqkavdkakaaqakASS 1595
Cdd:pfam11559 39 VIYELLQQRDRDLEFRESLNETIRTL-EAEIER---------LQSKIERLKTQLedlERELA---------------LLQ 93
|
90 100
....*....|....*....|....*.
gi 2486066007 1596 DKQAAASEKVADAEEKLKRVREDIAK 1621
Cdd:pfam11559 94 AKERQLEKKLKTLEQKLKNEKEELQR 119
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
76-205 |
2.09e-03 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 41.80 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 76 KLTEQKNkSEAANLA---VESAARkreEAEGKGIEAVSKAEQDLLKKRAAAERESRN-----------LIRAEESYEsal 141
Cdd:pfam12072 23 SIAEAKI-GSAEELAkriIEEAKK---EAETKKKEALLEAKEEIHKLRAEAERELKErrnelqrqerrLLQKEETLD--- 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2486066007 142 tesaRAAESLEKRQEELSKandgssrtfreLREEVRNAGDELDETANKASAFGDKFTAGLAEIS 205
Cdd:pfam12072 96 ----RKDESLEKKEESLEK-----------KEKELEAQQQQLEEKEEELEELIEEQRQELERIS 144
|
|
| TPR_MLP1_2 |
pfam07926 |
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of ... |
84-191 |
2.39e-03 |
|
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerization of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity.
Pssm-ID: 462316 [Multi-domain] Cd Length: 129 Bit Score: 39.93 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 84 SEAANLAVESAARKREEAEGKgiEAVSKAEQDLLKKRAAAEResrnlirAEESYESALTESARAAESLEKRQEELSKAND 163
Cdd:pfam07926 1 AELSSLQSEIKRLKEEAADAE--AQLQKLQEDLEKQAEIARE-------AQQNYERELVLHAEDIKALQALREELNELKA 71
|
90 100
....*....|....*....|....*...
gi 2486066007 164 gssrTFRELREEVRNAGDELDEtaNKAS 191
Cdd:pfam07926 72 ----EIAELKAEAESAKAELEE--SEES 93
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
62-196 |
2.47e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 62 RVKKSTQELEVAESKLTEQKNKSEAANLAVESAAR------KREEAEGKGIEAVSKAEQDLLK----KRAAAERESrnli 131
Cdd:PRK02224 476 RVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRierleeRREDLEELIAERRETIEEKRERaeelRERAAELEA---- 551
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2486066007 132 RAEESYESALT------ESARAAESLEKRQEELSKANDgSSRTFRELREEVRNAGDELDETANKASAFGDK 196
Cdd:PRK02224 552 EAEEKREAAAEaeeeaeEAREEVAELNSKLAELKERIE-SLERIRTLLAAIADAEDEIERLREKREALAEL 621
|
|
| SLT |
pfam01464 |
Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found ... |
1300-1364 |
2.61e-03 |
|
Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems.
Pssm-ID: 396169 [Multi-domain] Cd Length: 114 Bit Score: 39.60 E-value: 2.61e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2486066007 1300 IQIESGGDPRAVNNwdSNAAkgtpsgGLLQVIEPTY-RDVRNRYPDafeglPDDRFHPLTNLVAGV 1364
Cdd:pfam01464 19 AQQESGFNPKAVSK--SGAV------GLMQIMPSTAkRLGLRVNPG-----VDDLFDPEKNIKAGT 71
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
68-203 |
3.07e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.49 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 68 QELEVAESKLTEQKNKSEAANLAVESAARKREEAEGKGIEAVSKAEQDLlKKRAAAERESRNliRAEESYESALTESARA 147
Cdd:PRK09510 119 QAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEA-KKKAEAEAAKKA--AAEAKKKAEAEAAAKA 195
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2486066007 148 AESLEKRQEELSK---ANDGSSRTFRELREEVRNAGDELDETANKASAFGDKFTAGLAE 203
Cdd:PRK09510 196 AAEAKKKAEAEAKkkaAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAK 254
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1509-1658 |
3.27e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 1509 GLIGFGnSASVINSVLGAEQQLMEAREgystriaAISEAEKEHAEALKELDALRKSDSKM--SVENQRKLADAQKAVDKA 1586
Cdd:TIGR02168 659 GVITGG-SAKTNSSILERRREIEELEE-------KIEELEEKIAELEKALAELRKELEELeeELEQLRKELEELSRQISA 730
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2486066007 1587 KAAQAKASSDKQAAASEKVADAEEKLKRVREDIAKDADKDAQ------AHADEMVKATERVTAAEEDLAQKRKESVAA 1658
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEaeeelaEAEAEIEELEAQIEQLKEELKALREALDEL 808
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
56-160 |
3.42e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 56 VEKANFRVKKSTQELEVAESKLTEQKNKSEAANLA--VESAARKREEAEGKGIEA---VSKAEQDLLKKRAAAERESRNL 130
Cdd:COG1579 61 IKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQkeIESLKRRISDLEDEILELmerIEELEEELAELEAELAELEAEL 140
|
90 100 110
....*....|....*....|....*....|
gi 2486066007 131 IRAEESYESALTESARAAESLEKRQEELSK 160
Cdd:COG1579 141 EEKKAELDEELAELEAELEELEAEREELAA 170
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
68-203 |
3.74e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 68 QELEVAESKLTEQKNKSEAANLAVESAARKREEAEGkgIEAVSKAEQDLlkkrAAAERESRNLIRAEESYESA---LTES 144
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQERREALQR--LAEYSWDEIDV----ASAEREIAELEAELERLDASsddLAAL 690
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2486066007 145 ARAAESLEKRQEELSKANDGSSRTFRELREEVRNAGDELDETANKASAFGDKFTAGLAE 203
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
57-264 |
5.32e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 5.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 57 EKANFRVKKSTQELEVA-ESKLTEQKNKSEAANLAVESAARKREEAEGKgiEAVSKAEQDLLKKRAAA-ERESRNLIRAE 134
Cdd:TIGR02169 275 EELNKKIKDLGEEEQLRvKEKIGELEAEIASLERSIAEKERELEDAEER--LAKLEAEIDKLLAEIEElEREIEEERKRR 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 135 ESYESALTESARAAESLEKRQEELSKANDGSSRTFRELREEVRNAGDELDETANKASAFGD---KFTAGLAEIsRGALLG 211
Cdd:TIGR02169 353 DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEelqRLSEELADL-NAAIAG 431
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2486066007 212 IGAKIGT--TIMGGVQEAVSTGWETAMS----LDQVSRSLSAMTSETQVAEDMMVSLRE 264
Cdd:TIGR02169 432 IEAKINEleEEKEDKALEIKKQEWKLEQlaadLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
57-193 |
6.41e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 6.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 57 EKANFRVKKSTQELEVAESKLTEQKNksEAANLAVESA-ARKREEAEGKGIEAVSKAEQDLLKKRAAAERESRNLIRAEE 135
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRA--ELTLLNEEAAnLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2486066007 136 SYESALTESARAAESLEKR----QEELSKANDG---SSRTFRELREEVRNAGDELDETANKASAF 193
Cdd:TIGR02168 863 ELEELIEELESELEALLNEraslEEALALLRSEleeLSEELRELESKRSELRRELEELREKLAQL 927
|
|
| vATP-synt_E |
pfam01991 |
ATP synthase (E/31 kDa) subunit; This family includes the vacuolar ATP synthase E subunit, as ... |
98-185 |
7.13e-03 |
|
ATP synthase (E/31 kDa) subunit; This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit.
Pssm-ID: 396537 [Multi-domain] Cd Length: 199 Bit Score: 40.06 E-value: 7.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 98 REEAEGKGIEAVSKAEQDLLKKRAAAERESRNLIraEESYESALTES------ARAAESLEKRQEELSKANDGSSRTFRE 171
Cdd:pfam01991 3 RQEAEEKAEEIRAKAEEEFAIEKAELVQEAEEKI--DEIYEKKEKQAemqkkiIISNAKNEARLKVLEAREEILDEVFNE 80
|
90
....*....|....
gi 2486066007 172 LREEVRNAGDELDE 185
Cdd:pfam01991 81 AEKKLAELEEDTDE 94
|
|
| GBP_C |
pfam02841 |
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ... |
65-178 |
7.81e-03 |
|
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.
Pssm-ID: 460721 [Multi-domain] Cd Length: 297 Bit Score: 40.73 E-value: 7.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486066007 65 KSTQELEVAESKLTEQKNKSEAANLAVESAARKREEAEGKgIEAVSKAEQD---LLKKRAAAEREsrNLIRaeesyesal 141
Cdd:pfam02841 194 QTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQM-MEAQERSYQEhvkQLIEKMEAERE--QLLA--------- 261
|
90 100 110
....*....|....*....|....*....|....*..
gi 2486066007 142 tESARAAESLEKRQEELSKAndGSSRTFRELREEVRN 178
Cdd:pfam02841 262 -EQERMLEHKLQEQEELLKE--GFKTEAESLQKEIQD 295
|
|
| |
