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Conserved domains on  [gi|2491029784|ref|WP_279517290|]
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sensor histidine kinase [Micromonospora sp. DH14]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK11086 super family cl35987
sensory histidine kinase DcuS; Provisional
40-527 2.65e-114

sensory histidine kinase DcuS; Provisional


The actual alignment was detected with superfamily member PRK11086:

Pssm-ID: 236839 [Multi-domain]  Cd Length: 542  Bit Score: 348.83  E-value: 2.65e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  40 RQAAQEEVLAVAQTVARSPDVRAALITADPASILQPYAESTRLATGTDFVVVMAPDRTRFSHPTRERIGQPFVG-EIGPA 118
Cdd:PRK11086   48 RDGLAEKALAIARTVADSPIVIQGLQGKPDESGIQTYAEAVRKRNDLLFIVVTDMQGIRYSHPNPQKIGKHFIGgDELPA 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 119 LAGRPFTTTNVGTLGESVRAVVPVYDEQRHLVGLVSVGITTRAIDRKL---LGQLP--VLFGVAAPALalaatGSWLLSR 193
Cdd:PRK11086  128 LKGKENVSINRGTLGQALRVFTPVYDENGKQIGVVAVGISLSEVTEQInesRWSIYwsILFGALVGLI-----GTVILVR 202
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 194 RLRRQTHGLGPAQMTRMYEYYDAVLHSVREGLVVLTTDRRVALVNDEGRRLLGLDADAPV--IDQPVAgiDLPPAA--AE 269
Cdd:PRK11086  203 VLKRILFGLEPYEISTLFEQRQAMLQSIKEGVIAVDDRGEVTLINDEAKRLFNYKKGLEDdpLGTDVE--SWMPVSrlKE 280
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 270 LLDSGRDARDEPILAGDRVLVANQRTARFEGAALGTVLTLRDQTELRTLASELDSVRALTEALQAQTHESANRLHTVLTL 349
Cdd:PRK11086  281 VLRTGTPRRDEEININGRLLLTNTVPVRVNGEIIGAIATFRDKTEVRQLAQRLDGMVNYADALRAQSHEFMNKLHVILGL 360
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 350 VELGRTEEavrLGTRDLALA---QQLTDRVVGAVTEPALAALLLGKSAQAGERGVDLVVEPDCRLDDSPLP--TADLLTV 424
Cdd:PRK11086  361 LHLKSYDQ---LEDYILKTAnnyQEEIGSLLGKIKSPVIAGFLLGKISRARELGITLIISEDSQLPDSGDEdqVHELITI 437
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 425 VGNLVDNALEAVAGTPApRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKSTGRGLGLALVGQVVRRHGGS 504
Cdd:PRK11086  438 LGNLIENALEAVGGEEG-GEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGSNRGVGLYLVKQSVENLGGS 516
                         490       500
                  ....*....|....*....|...
gi 2491029784 505 AEVDRSDDGGSLFTVRLPSRIER 527
Cdd:PRK11086  517 IAVESEPGVGTQFFVQIPWDGER 539
 
Name Accession Description Interval E-value
PRK11086 PRK11086
sensory histidine kinase DcuS; Provisional
40-527 2.65e-114

sensory histidine kinase DcuS; Provisional


Pssm-ID: 236839 [Multi-domain]  Cd Length: 542  Bit Score: 348.83  E-value: 2.65e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  40 RQAAQEEVLAVAQTVARSPDVRAALITADPASILQPYAESTRLATGTDFVVVMAPDRTRFSHPTRERIGQPFVG-EIGPA 118
Cdd:PRK11086   48 RDGLAEKALAIARTVADSPIVIQGLQGKPDESGIQTYAEAVRKRNDLLFIVVTDMQGIRYSHPNPQKIGKHFIGgDELPA 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 119 LAGRPFTTTNVGTLGESVRAVVPVYDEQRHLVGLVSVGITTRAIDRKL---LGQLP--VLFGVAAPALalaatGSWLLSR 193
Cdd:PRK11086  128 LKGKENVSINRGTLGQALRVFTPVYDENGKQIGVVAVGISLSEVTEQInesRWSIYwsILFGALVGLI-----GTVILVR 202
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 194 RLRRQTHGLGPAQMTRMYEYYDAVLHSVREGLVVLTTDRRVALVNDEGRRLLGLDADAPV--IDQPVAgiDLPPAA--AE 269
Cdd:PRK11086  203 VLKRILFGLEPYEISTLFEQRQAMLQSIKEGVIAVDDRGEVTLINDEAKRLFNYKKGLEDdpLGTDVE--SWMPVSrlKE 280
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 270 LLDSGRDARDEPILAGDRVLVANQRTARFEGAALGTVLTLRDQTELRTLASELDSVRALTEALQAQTHESANRLHTVLTL 349
Cdd:PRK11086  281 VLRTGTPRRDEEININGRLLLTNTVPVRVNGEIIGAIATFRDKTEVRQLAQRLDGMVNYADALRAQSHEFMNKLHVILGL 360
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 350 VELGRTEEavrLGTRDLALA---QQLTDRVVGAVTEPALAALLLGKSAQAGERGVDLVVEPDCRLDDSPLP--TADLLTV 424
Cdd:PRK11086  361 LHLKSYDQ---LEDYILKTAnnyQEEIGSLLGKIKSPVIAGFLLGKISRARELGITLIISEDSQLPDSGDEdqVHELITI 437
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 425 VGNLVDNALEAVAGTPApRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKSTGRGLGLALVGQVVRRHGGS 504
Cdd:PRK11086  438 LGNLIENALEAVGGEEG-GEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGSNRGVGLYLVKQSVENLGGS 516
                         490       500
                  ....*....|....*....|...
gi 2491029784 505 AEVDRSDDGGSLFTVRLPSRIER 527
Cdd:PRK11086  517 IAVESEPGVGTQFFVQIPWDGER 539
CitA COG3290
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ...
205-526 2.01e-110

Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];


Pssm-ID: 442519 [Multi-domain]  Cd Length: 389  Bit Score: 333.74  E-value: 2.01e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 205 AQMTRMYEYYDAVLHSVREGLVVLTTDRRVALVNDEGRRLLGLDAdapvidqpvAGIDLPPAAAELLDSGRdaRDEPILA 284
Cdd:COG3290    77 EEIARLVEEREAVLESIREGVIAVDRDGRITLINDAARRLLGLDA---------IGRPIDEVLAEVLETGE--RDEEILL 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 285 GDRVLVANQRTARFEGAALGTVLTLRDQTELRTLASELDSVRALTEALQAQTHESANRLHTVLTLVELGRTEEAVRLGTR 364
Cdd:COG3290   146 NGRVLVVNRVPIRDDGRVVGAVATFRDRTELERLEEELEGVKELAEALRAQRHDFRNHLHTISGLLQLGEYDEALEYIDE 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 365 DLALAQQLTDRVVGAVTEPALAALLLGKSAQAGERGVDLVVEPDCRLDDSPLPTADLLTVVGNLVDNALEAVAGTPAP-R 443
Cdd:COG3290   226 ISEELQELIDSLLSRIGNPVLAALLLGKAARARERGIDLTIDIDSDLPDLPLSDTDLVTILGNLLDNAIEAVEKLPEEeR 305
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 444 RVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTK-STGRGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:COG3290   306 RVELSIRDDGDELVIEVEDSGPGIPEELLEKIFERGFSTKlGEGRGLGLALVKQIVEKYGGTIEVESEEGEGTVFTVRLP 385

                  ....
gi 2491029784 523 SRIE 526
Cdd:COG3290   386 KEGE 389
HATPase_DpiB-CitA-like cd16915
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
421-522 1.22e-31

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 DpiB, DcuS, and Bacillus subtilis CitS, DctS, and YufL; This family includes histidine kinase-like ATPase domains of Escherichia coli K-12 DpiB and DcuS, and Bacillus subtilis CitS, DctS and MalK histidine kinases (HKs) all of which are two component transduction systems (TCSs). E. coli K-12 DpiB (also known as CitA) is the histidine kinase (HK) of DpiA-DpiB, a two-component signal transduction system (TCS) required for the expression of citrate-specific fermentation genes and genes involved in plasmid inheritance. E. coli K-12 DcuS (also known as YjdH) is the HK of DcuS-DcuR, a TCS that in the presence of the extracellular C4-dicarboxlates, activates the expression of the genes of anaerobic fumarate respiration and of aerobic C4-dicarboxylate uptake. CitS is the HK of Bacillus subtilis CitS-CitT, a TCS which regulates expression of CitM, the Mg-citrate transporter. Bacillus subtilis DctS forms a tripartite sensor unit (DctS/DctA/DctB) for sensing C4 dicarboxylates. Bacillus subtilis MalK (also known as YfuL) is the HK of MalK-MalR (YufL-YufM) a TCS which regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Proteins having this DpiB-CitA-like HATPase domain generally have sensor domains such as Cache and PAS, and a histidine kinase A (HisKA)-like SpoOB-type, alpha-helical domain.


Pssm-ID: 340392 [Multi-domain]  Cd Length: 104  Bit Score: 117.77  E-value: 1.22e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 421 LLTVVGNLVDNALEAVAGTPAP-RRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKSTG-RGLGLALVGQVV 498
Cdd:cd16915     1 LITIVGNLIDNALDALAATGAPnKQVEVFLRDEGDDLVIEVRDTGPGIAPELRDKVFERGVSTKGQGeRGIGLALVRQSV 80
                          90       100
                  ....*....|....*....|....
gi 2491029784 499 RRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16915    81 ERLGGSITVESEPGGGTTFSIRIP 104
HATPase_c smart00387
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
421-522 7.85e-25

Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.


Pssm-ID: 214643 [Multi-domain]  Cd Length: 111  Bit Score: 98.88  E-value: 7.85e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  421 LLTVVGNLVDNALEAvagTPAPRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKST-----GRGLGLALVG 495
Cdd:smart00387   6 LRQVLSNLLDNAIKY---TPEGGRITVTLERDGDHVEITVEDNGPGIPPEDLEKIFEPFFRTDKRsrkigGTGLGLSIVK 82
                           90       100
                   ....*....|....*....|....*..
gi 2491029784  496 QVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:smart00387  83 KLVELHGGEISVESEPGGGTTFTITLP 109
sCache_3_2 pfam17203
Single cache domain 3; This domain is associated to sensor histidine kinases and recognizes ...
35-171 6.29e-23

Single cache domain 3; This domain is associated to sensor histidine kinases and recognizes citrate and TCA cycle intermediates, Ag(II), Zn(II), Mg(II) (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 435783 [Multi-domain]  Cd Length: 140  Bit Score: 94.40  E-value: 6.29e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  35 ARSDSRQAAQEEVLAVAQTVARSPDVRAALITADPASILQPYAESTRLATGTDFVVVMAPDRTRFSHPTRERIGQPFVGE 114
Cdd:pfam17203   2 LRADLTRQLERRALALARSVAASPVVRVALTDPEPYPGLQALVESVRRITGADYVVIADRRGRVLAHPDPERVGRRLSGP 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2491029784 115 IG-PAL-AGRPFTTTNVGTLGESVRAVVPVYDEQRHLVGLVSVGITTRAIDRKLLGQLP 171
Cdd:pfam17203  82 ATaPALtAGRSYTGTVTGTLGPSLDAKLPIFDADGRVIGIVSVGVKQDSITAALRELLR 140
cztS_silS_copS TIGR01386
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain ...
396-522 5.85e-11

heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.


Pssm-ID: 273593 [Multi-domain]  Cd Length: 457  Bit Score: 64.72  E-value: 5.85e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 396 AGERGVDLVVEPDCRLDDSPLPtadLLTVVGNLVDNALEAvagTPAPRRVRVFVGAADDELVVRVADSGPGLAPE---RV 472
Cdd:TIGR01386 332 AEERGVRIRVEGEGLVRGDPQM---FRRAISNLLSNALRH---TPDGGTITVRIERRSDEVRVSVSNPGPGIPPEhlsRL 405
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2491029784 473 ADAFRRG---WSTKSTGRGLGLALVGQVVRRHGGSAEVDrSDDGGSLFTVRLP 522
Cdd:TIGR01386 406 FDRFYRVdpaRSNSGEGTGLGLAIVRSIMEAHGGRASAE-SPDGKTRFILRFP 457
 
Name Accession Description Interval E-value
PRK11086 PRK11086
sensory histidine kinase DcuS; Provisional
40-527 2.65e-114

sensory histidine kinase DcuS; Provisional


Pssm-ID: 236839 [Multi-domain]  Cd Length: 542  Bit Score: 348.83  E-value: 2.65e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  40 RQAAQEEVLAVAQTVARSPDVRAALITADPASILQPYAESTRLATGTDFVVVMAPDRTRFSHPTRERIGQPFVG-EIGPA 118
Cdd:PRK11086   48 RDGLAEKALAIARTVADSPIVIQGLQGKPDESGIQTYAEAVRKRNDLLFIVVTDMQGIRYSHPNPQKIGKHFIGgDELPA 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 119 LAGRPFTTTNVGTLGESVRAVVPVYDEQRHLVGLVSVGITTRAIDRKL---LGQLP--VLFGVAAPALalaatGSWLLSR 193
Cdd:PRK11086  128 LKGKENVSINRGTLGQALRVFTPVYDENGKQIGVVAVGISLSEVTEQInesRWSIYwsILFGALVGLI-----GTVILVR 202
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 194 RLRRQTHGLGPAQMTRMYEYYDAVLHSVREGLVVLTTDRRVALVNDEGRRLLGLDADAPV--IDQPVAgiDLPPAA--AE 269
Cdd:PRK11086  203 VLKRILFGLEPYEISTLFEQRQAMLQSIKEGVIAVDDRGEVTLINDEAKRLFNYKKGLEDdpLGTDVE--SWMPVSrlKE 280
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 270 LLDSGRDARDEPILAGDRVLVANQRTARFEGAALGTVLTLRDQTELRTLASELDSVRALTEALQAQTHESANRLHTVLTL 349
Cdd:PRK11086  281 VLRTGTPRRDEEININGRLLLTNTVPVRVNGEIIGAIATFRDKTEVRQLAQRLDGMVNYADALRAQSHEFMNKLHVILGL 360
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 350 VELGRTEEavrLGTRDLALA---QQLTDRVVGAVTEPALAALLLGKSAQAGERGVDLVVEPDCRLDDSPLP--TADLLTV 424
Cdd:PRK11086  361 LHLKSYDQ---LEDYILKTAnnyQEEIGSLLGKIKSPVIAGFLLGKISRARELGITLIISEDSQLPDSGDEdqVHELITI 437
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 425 VGNLVDNALEAVAGTPApRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKSTGRGLGLALVGQVVRRHGGS 504
Cdd:PRK11086  438 LGNLIENALEAVGGEEG-GEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGSNRGVGLYLVKQSVENLGGS 516
                         490       500
                  ....*....|....*....|...
gi 2491029784 505 AEVDRSDDGGSLFTVRLPSRIER 527
Cdd:PRK11086  517 IAVESEPGVGTQFFVQIPWDGER 539
CitA COG3290
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ...
205-526 2.01e-110

Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];


Pssm-ID: 442519 [Multi-domain]  Cd Length: 389  Bit Score: 333.74  E-value: 2.01e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 205 AQMTRMYEYYDAVLHSVREGLVVLTTDRRVALVNDEGRRLLGLDAdapvidqpvAGIDLPPAAAELLDSGRdaRDEPILA 284
Cdd:COG3290    77 EEIARLVEEREAVLESIREGVIAVDRDGRITLINDAARRLLGLDA---------IGRPIDEVLAEVLETGE--RDEEILL 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 285 GDRVLVANQRTARFEGAALGTVLTLRDQTELRTLASELDSVRALTEALQAQTHESANRLHTVLTLVELGRTEEAVRLGTR 364
Cdd:COG3290   146 NGRVLVVNRVPIRDDGRVVGAVATFRDRTELERLEEELEGVKELAEALRAQRHDFRNHLHTISGLLQLGEYDEALEYIDE 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 365 DLALAQQLTDRVVGAVTEPALAALLLGKSAQAGERGVDLVVEPDCRLDDSPLPTADLLTVVGNLVDNALEAVAGTPAP-R 443
Cdd:COG3290   226 ISEELQELIDSLLSRIGNPVLAALLLGKAARARERGIDLTIDIDSDLPDLPLSDTDLVTILGNLLDNAIEAVEKLPEEeR 305
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 444 RVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTK-STGRGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:COG3290   306 RVELSIRDDGDELVIEVEDSGPGIPEELLEKIFERGFSTKlGEGRGLGLALVKQIVEKYGGTIEVESEEGEGTVFTVRLP 385

                  ....
gi 2491029784 523 SRIE 526
Cdd:COG3290   386 KEGE 389
dpiB PRK15053
sensor histidine kinase DpiB; Provisional
3-522 3.46e-57

sensor histidine kinase DpiB; Provisional


Pssm-ID: 185013 [Multi-domain]  Cd Length: 545  Bit Score: 199.67  E-value: 3.46e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784   3 RRQWSIAGQL-FALQAMVVTLLV---LAGAAGAVWLARSDSRQAAQEEVLAV--AQTVARSPDVRAALITADPASILQPy 76
Cdd:PRK15053    7 NKQFAFFQRLaFPLRIFLLILVFsifVIAALAQYFSASFEDYLTLHVRDMAMnqAKIIASNDSVISAVKTRDYKRLATI- 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  77 aeSTRLATGTDFVVVMAPDR--TRFSHPTRERIGQPFVGEIGPALA-GRPFTTTNVGTLGESVRAVVPVYDEQRHLVGLV 153
Cdd:PRK15053   86 --ANKLQRDTDFDYVVIGDRhsIRLYHPNPEKIGYPMQFTKPGALEkGESYFITGKGSMGMAMRAKTPIFDDDGKVIGVV 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 154 SVGITTRAIDRKLLGQLPVLFGVAAPALALAATGSWLLSRRLRRQTHGLGPAQMTRMYEYYDAVLHSVREGLVVLTTDRR 233
Cdd:PRK15053  164 SIGYLVSKIDSWRLEFLLPMAGVFVVLLGILMLLSWFFAAHIRRQMMGMEPKQIARVVRQQEALFSSVYEGLIAVDPHGY 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 234 VALVNDEGRRLLGLDADA-PVIDQPVAGIdLPPAAAELLDSGRDARDEPILAGDRVLVANQRTARFEGAALGTVLTLRDQ 312
Cdd:PRK15053  244 ITAINRNARKMLGLSSPGrQWLGKPIAEV-VRPADFFTEQIDEKRQDVVANFNGLSVIANREAIRSGDDLLGAIISFRSK 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 313 TELRTLASELDSVRALTEALQAQTHESANRLHTVLTLVELGRTEEAVRLGTRDLALAQQLTDRVVGAVTEPALAALLLGK 392
Cdd:PRK15053  323 DEISTLNAQLTQIKQYVESLRTLRHEHLNWMSTLNGLLQMKEYDRVLEMVQGESQAQQQLIDSLREAFADRQVAGLLFGK 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 393 SAQAGERGVDLVVEPDCRLDDSP--LPTADLLTVVGNLVDNALEAVAGTP-APRRVRVFVGAADDELVVRVADSGPGLAP 469
Cdd:PRK15053  403 VQRARELGLKMVIVPGSQLSQLPpgLDSTEFAAIVGNLLDNAFEASLRSDeGNKIVELFLSDEGDDVVIEVADQGCGVPE 482
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2491029784 470 ERVADAFRRGWSTKSTG---RGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:PRK15053  483 SLRDKIFEQGVSTRADEpgeHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIP 538
NtrY COG5000
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ...
191-522 2.35e-35

Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];


Pssm-ID: 444024 [Multi-domain]  Cd Length: 422  Bit Score: 137.02  E-value: 2.35e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 191 LSRRLRRQThglgpAQMTRMYEYYDAVLHSVREGLVVLTTDRRVALVNDEGRRLLGLDADApVIDQPVAGIDLPPAAAEL 270
Cdd:COG5000    74 MTDQLKEQR-----EELEERRRYLETILENLPAGVIVLDADGRITLANPAAERLLGIPLEE-LIGKPLEELLPELDLAEL 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 271 LdsgRDARDEPILAGDRVLVANQRTARFEGAAL---GTVLTLRDQTELRTlASELDSVRALTEALqaqTHESANRLHTVL 347
Cdd:COG5000   148 L---REALERGWQEEIELTRDGRRTLLVRASPLrddGYVIVFDDITELLR-AERLAAWGELARRI---AHEIKNPLTPIQ 220
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 348 TLVELGRTEEAVRLGTrDLALAQQLTDRVVGAVT----------------EPALAALLLGK---------SAQAGERGVD 402
Cdd:COG5000   221 LSAERLRRKLADKLEE-DREDLERALDTIIRQVDrlkrivdefldfarlpEPQLEPVDLNEllrevlalyEPALKEKDIR 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 403 LVVEPDcrlDDSPLPTAD---LLTVVGNLVDNALEAVAGTPaprRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRG 479
Cdd:COG5000   300 LELDLD---PDLPEVLADrdqLEQVLINLLKNAIEAIEEGG---EIEVSTRREDGRVRIEVSDNGPGIPEEVLERIFEPF 373
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2491029784 480 WSTKSTGRGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:COG5000   374 FTTKPKGTGLGLAIVKKIVEEHGGTIELESRPGGGTTFTIRLP 416
HATPase_DpiB-CitA-like cd16915
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
421-522 1.22e-31

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 DpiB, DcuS, and Bacillus subtilis CitS, DctS, and YufL; This family includes histidine kinase-like ATPase domains of Escherichia coli K-12 DpiB and DcuS, and Bacillus subtilis CitS, DctS and MalK histidine kinases (HKs) all of which are two component transduction systems (TCSs). E. coli K-12 DpiB (also known as CitA) is the histidine kinase (HK) of DpiA-DpiB, a two-component signal transduction system (TCS) required for the expression of citrate-specific fermentation genes and genes involved in plasmid inheritance. E. coli K-12 DcuS (also known as YjdH) is the HK of DcuS-DcuR, a TCS that in the presence of the extracellular C4-dicarboxlates, activates the expression of the genes of anaerobic fumarate respiration and of aerobic C4-dicarboxylate uptake. CitS is the HK of Bacillus subtilis CitS-CitT, a TCS which regulates expression of CitM, the Mg-citrate transporter. Bacillus subtilis DctS forms a tripartite sensor unit (DctS/DctA/DctB) for sensing C4 dicarboxylates. Bacillus subtilis MalK (also known as YfuL) is the HK of MalK-MalR (YufL-YufM) a TCS which regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Proteins having this DpiB-CitA-like HATPase domain generally have sensor domains such as Cache and PAS, and a histidine kinase A (HisKA)-like SpoOB-type, alpha-helical domain.


Pssm-ID: 340392 [Multi-domain]  Cd Length: 104  Bit Score: 117.77  E-value: 1.22e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 421 LLTVVGNLVDNALEAVAGTPAP-RRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKSTG-RGLGLALVGQVV 498
Cdd:cd16915     1 LITIVGNLIDNALDALAATGAPnKQVEVFLRDEGDDLVIEVRDTGPGIAPELRDKVFERGVSTKGQGeRGIGLALVRQSV 80
                          90       100
                  ....*....|....*....|....
gi 2491029784 499 RRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16915    81 ERLGGSITVESEPGGGTTFSIRIP 104
KdpD COG2205
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
314-522 1.84e-26

K+-sensing histidine kinase KdpD [Signal transduction mechanisms];


Pssm-ID: 441807 [Multi-domain]  Cd Length: 239  Bit Score: 107.69  E-value: 1.84e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 314 ELRT-----------LASELDSVRALTEALQAQTHESANRLHTVLT-LVELGRTEeavrlgTRDLALAQQLTDrvVGAVT 381
Cdd:COG2205    26 ELRTpltsilgaaelLLDEEDLSPEERRELLEIIRESAERLLRLIEdLLDLSRLE------SGKLSLELEPVD--LAELL 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 382 EPALAALllgkSAQAGERGVDLVVEPDcrlDDSPLPTAD---LLTVVGNLVDNALEAvagTPAPRRVRVFVGAADDELVV 458
Cdd:COG2205    98 EEAVEEL----RPLAEEKGIRLELDLP---PELPLVYADpelLEQVLANLLDNAIKY---SPPGGTITISARREGDGVRI 167
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2491029784 459 RVADSGPGLAPE---RVADAFRRGWSTKST-GRGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:COG2205   168 SVSDNGPGIPEEeleRIFERFYRGDNSRGEgGTGLGLAIVKRIVEAHGGTIWVESEPGGGTTFTVTLP 235
HATPase_c smart00387
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
421-522 7.85e-25

Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.


Pssm-ID: 214643 [Multi-domain]  Cd Length: 111  Bit Score: 98.88  E-value: 7.85e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  421 LLTVVGNLVDNALEAvagTPAPRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKST-----GRGLGLALVG 495
Cdd:smart00387   6 LRQVLSNLLDNAIKY---TPEGGRITVTLERDGDHVEITVEDNGPGIPPEDLEKIFEPFFRTDKRsrkigGTGLGLSIVK 82
                           90       100
                   ....*....|....*....|....*..
gi 2491029784  496 QVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:smart00387  83 KLVELHGGEISVESEPGGGTTFTITLP 109
NtrB COG3852
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
206-522 1.05e-24

Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];


Pssm-ID: 443061 [Multi-domain]  Cd Length: 361  Bit Score: 105.31  E-value: 1.05e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 206 QMTRMYEYYDAVLHSVREGLVVLTTDRRVALVNDEGRRLLGLDADApVIDQPVAgiDLPPAAAELLDSGRDARDE--PIL 283
Cdd:COG3852     1 ALRESEELLRAILDSLPDAVIVLDADGRITYVNPAAERLLGLSAEE-LLGRPLA--ELFPEDSPLRELLERALAEgqPVT 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 284 AGDRVLVANQRTARF----------EGAALGTVLTLRDQTELRTLASELdsvrALTEALQAQT-------HESANRLHTV 346
Cdd:COG3852    78 EREVTLRRKDGEERPvdvsvsplrdAEGEGGVLLVLRDITERKRLEREL----RRAEKLAAVGelaaglaHEIRNPLTGI 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 347 LTLVELGRTEEAVRLGTRDLALAQQLTDRVVGAVTE---------PALAAL----LLGK---SAQAG-ERGVDLVVE--- 406
Cdd:COG3852   154 RGAAQLLERELPDDELREYTQLIIEEADRLNNLVDRllsfsrprpPEREPVnlheVLERvleLLRAEaPKNIRIVRDydp 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 407 --PDCRLDdsplptADLLT-VVGNLVDNALEAVAGTP-------APRRVRVFVGAADDELVVRVADSGPGLAPE---RVA 473
Cdd:COG3852   234 slPEVLGD------PDQLIqVLLNLVRNAAEAMPEGGtitirtrVERQVTLGGLRPRLYVRIEVIDNGPGIPEEildRIF 307
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 2491029784 474 DAFrrgWSTKSTGRGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:COG3852   308 EPF---FTTKEKGTGLGLAIVQKIVEQHGGTIEVESEPGKGTTFRIYLP 353
BaeS COG0642
Signal transduction histidine kinase [Signal transduction mechanisms];
213-522 4.71e-24

Signal transduction histidine kinase [Signal transduction mechanisms];


Pssm-ID: 440407 [Multi-domain]  Cd Length: 328  Bit Score: 103.06  E-value: 4.71e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 213 YYDAVLHSVREGLVVLTTDRRVALVNDEGRRLLGLDADAPVIDQPVAGIDLPPAAAELLDSGRDARDEPILAGDRVLVAN 292
Cdd:COG0642    14 LLLLLLLALLLLLLLLLLLALLLLLALLLLLLLLLLLLLLLALALLALLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 293 QRTARFEGAALGTVLTLRDQT-----ELRT-LASeldsVRALTEALQAQT-----------HESANRLHTVLT-LVELGR 354
Cdd:COG0642    94 LLLLALLLLLEEANEAKSRFLanvshELRTpLTA----IRGYLELLLEELdeeqreyletiLRSADRLLRLINdLLDLSR 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 355 TE-EAVRLGTRDLALAQqLTDRVVGAVtepalaalllgkSAQAGERGVDLVVEPDCRLDDSPLPTADLLTVVGNLVDNAL 433
Cdd:COG0642   170 LEaGKLELEPEPVDLAE-LLEEVVELF------------RPLAEEKGIELELDLPDDLPTVRGDPDRLRQVLLNLLSNAI 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 434 EAvagTPAPRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKST----GRGLGLALVGQVVRRHGGSAEVDR 509
Cdd:COG0642   237 KY---TPEGGTVTVSVRREGDRVRISVEDTGPGIPPEDLERIFEPFFRTDPSrrggGTGLGLAIVKRIVELHGGTIEVES 313
                         330
                  ....*....|...
gi 2491029784 510 SDDGGSLFTVRLP 522
Cdd:COG0642   314 EPGKGTTFTVTLP 326
sCache_3_2 pfam17203
Single cache domain 3; This domain is associated to sensor histidine kinases and recognizes ...
35-171 6.29e-23

Single cache domain 3; This domain is associated to sensor histidine kinases and recognizes citrate and TCA cycle intermediates, Ag(II), Zn(II), Mg(II) (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 435783 [Multi-domain]  Cd Length: 140  Bit Score: 94.40  E-value: 6.29e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  35 ARSDSRQAAQEEVLAVAQTVARSPDVRAALITADPASILQPYAESTRLATGTDFVVVMAPDRTRFSHPTRERIGQPFVGE 114
Cdd:pfam17203   2 LRADLTRQLERRALALARSVAASPVVRVALTDPEPYPGLQALVESVRRITGADYVVIADRRGRVLAHPDPERVGRRLSGP 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2491029784 115 IG-PAL-AGRPFTTTNVGTLGESVRAVVPVYDEQRHLVGLVSVGITTRAIDRKLLGQLP 171
Cdd:pfam17203  82 ATaPALtAGRSYTGTVTGTLGPSLDAKLPIFDADGRVIGIVSVGVKQDSITAALRELLR 140
WalK COG5002
Sensor histidine kinase WalK [Signal transduction mechanisms];
220-522 8.54e-23

Sensor histidine kinase WalK [Signal transduction mechanisms];


Pssm-ID: 444026 [Multi-domain]  Cd Length: 390  Bit Score: 100.40  E-value: 8.54e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 220 SVREGLVVLTTDRRVALVNDEGRRLLGLDADAPVIDQPVAGIDLPPAAAELLDSGRDARDEPILAGDRVLVANQRTARFE 299
Cdd:COG5002    63 LLLLALLLLLLLLLLLLALALLLLALLLLLLLLLLLLALLILLLLLALLILLAALLLLLSELLLLLLLLGRLSLRLSALL 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 300 GAALGTVLTLRDQTELRTLASELD---------------SVRALTEALQAQTHESANRLHTVLTLVElgrtEEAVRLG-- 362
Cdd:COG5002   143 LGLLLLAAVERDITELERLEQMRRefvanvshelrtpltSIRGYLELLLDGAADDPEERREYLEIIL----EEAERLSrl 218
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 363 -----------TRDLALAQQLTDrvVGAVTEPALAALllgkSAQAGERGVDLVVEPDcrlDDSPLPTAD---LLTVVGNL 428
Cdd:COG5002   219 vndlldlsrleSGELKLEKEPVD--LAELLEEVVEEL----RPLAEEKGIELELDLP---EDPLLVLGDpdrLEQVLTNL 289
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 429 VDNALEAvagTPAPRRVRVFVGAADDELVVRVADSGPGLAPE---RVADAFRRG---WSTKSTGRGLGLALVGQVVRRHG 502
Cdd:COG5002   290 LDNAIKY---TPEGGTITVSLREEDDQVRISVRDTGIGIPEEdlpRIFERFYRVdksRSRETGGTGLGLAIVKHIVEAHG 366
                         330       340
                  ....*....|....*....|
gi 2491029784 503 GSAEVDRSDDGGSLFTVRLP 522
Cdd:COG5002   367 GRIWVESEPGKGTTFTITLP 386
HATPase cd00075
Histidine kinase-like ATPase domain; This superfamily includes the histidine kinase-like ...
421-521 1.43e-22

Histidine kinase-like ATPase domain; This superfamily includes the histidine kinase-like ATPase (HATPase) domains of several ATP-binding proteins such as histidine kinase, DNA gyrase B, topoisomerases, heat shock protein 90 (HSP90), phytochrome-like ATPases and DNA mismatch repair proteins. Domains belonging to this superfamily are also referred to as GHKL (gyrase, heat-shock protein 90, histidine kinase, MutL) ATPase domains.


Pssm-ID: 340391 [Multi-domain]  Cd Length: 102  Bit Score: 92.28  E-value: 1.43e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 421 LLTVVGNLVDNALEAvagTPAPRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKST----GRGLGLALVGQ 496
Cdd:cd00075     1 LEQVLSNLLDNALKY---SPPGGTIEISLRQEGDGVVLEVEDNGPGIPEEDLERIFERFYRGDKSreggGTGLGLAIVRR 77
                          90       100
                  ....*....|....*....|....*
gi 2491029784 497 VVRRHGGSAEVDRSDDGGSLFTVRL 521
Cdd:cd00075    78 IVEAHGGRITVESEPGGGTTFTVTL 102
HATPase_c pfam02518
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ...
420-525 4.98e-21

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 460579 [Multi-domain]  Cd Length: 109  Bit Score: 88.19  E-value: 4.98e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 420 DLLTVVGNLVDNALEAvagTPAPRRVRVFVgAADDELVVRVADSGPGLAPE---RVADAFRRGWSTKSTGRGLGLALVGQ 496
Cdd:pfam02518   5 RLRQVLSNLLDNALKH---AAKAGEITVTL-SEGGELTLTVEDNGIGIPPEdlpRIFEPFSTADKRGGGGTGLGLSIVRK 80
                          90       100
                  ....*....|....*....|....*....
gi 2491029784 497 VVRRHGGSAEVDRSDDGGSLFTVRLPSRI 525
Cdd:pfam02518  81 LVELLGGTITVESEPGGGTTVTLTLPLAQ 109
PRK11360 PRK11360
two-component system sensor histidine kinase AtoS;
213-528 4.48e-20

two-component system sensor histidine kinase AtoS;


Pssm-ID: 236901 [Multi-domain]  Cd Length: 607  Bit Score: 93.49  E-value: 4.48e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 213 YYDAVLHSVREGLVVLTTDRRVALVNDEGRRLLGLDADApVIDQPVAGIdLPPAAA------ELLDSGRDARD-EPILAG 285
Cdd:PRK11360  263 LNELILESIADGVIAIDRQGKITTMNPAAEVITGLQRHE-LVGKPYSEL-FPPNTPfaspllDTLEHGTEHVDlEISFPG 340
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 286 D----RVLVANQRTARFEGAALGTVLTLRDQTELRTLASEL---DSVRALTEALQAQTHESANRLHTVLTLVELGRTEEA 358
Cdd:PRK11360  341 RdrtiELSVSTSLLHNTHGEMIGALVIFSDLTERKRLQRRVarqERLAALGELVAGVAHEIRNPLTAIRGYVQIWRQQTS 420
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 359 VRLGTRDLALAQQLTDRVVGAVTEpalaALLLGKSAQAGERGVDL--------------------VVEPDCrldDSPLPT 418
Cdd:PRK11360  421 DPPSQEYLSVVLREVDRLNKVIDQ----LLEFSRPRESQWQPVSLnalveevlqlfqtagvqarvDFETEL---DNELPP 493
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 419 ----ADLL-TVVGNLVDNALEAVagtPAPRRVRVFVG-AADDELVVRVADSGPGLAPERVADAFRRGWSTKSTGRGLGLA 492
Cdd:PRK11360  494 iwadPELLkQVLLNILINAVQAI---SARGKIRIRTWqYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKAKGTGLGLA 570
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 2491029784 493 LVGQVVRRHGGSAEVDRSDDGGSLFTVRLPSRIERS 528
Cdd:PRK11360  571 LSQRIINAHGGDIEVESEPGVGTTFTLYLPINPQGN 606
COG4191 COG4191
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ...
393-522 2.45e-19

Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];


Pssm-ID: 443345 [Multi-domain]  Cd Length: 361  Bit Score: 89.47  E-value: 2.45e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 393 SAQAGERGVDLVVEPDcrlDDSPLPTAD---LLTVVGNLVDNALEAVAGTpAPRRVRVFVGAADDELVVRVADSGPGLAP 469
Cdd:COG4191   229 RPRLKARGIEVELDLP---PDLPPVLGDpgqLEQVLLNLLINAIDAMEEG-EGGRITISTRREGDYVVISVRDNGPGIPP 304
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2491029784 470 E---RVADAFrrgWSTKSTGR--GLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:COG4191   305 EvleRIFEPF---FTTKPVGKgtGLGLSISYGIVEKHGGRIEVESEPGGGTTFTITLP 359
HATPase_TmoS-FixL-DctS-like cd16920
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
424-522 9.46e-17

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Rhizobium meliloti FixL, and Rhodobacter capsulatus DctS; includes hybrid sensor histidine kinase similar to Pseudomonas mendocina TmoS; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs), such as Pseudomonas mendocina TmoS HK of the TmoS-TmoT TCS, which controls the expression of the toluene-4-monooxygenase pathway, Rhizobium meliloti FixL HK of the FixL-FixJ TCS, which regulates the expression of the genes related to nitrogen fixation in the root nodule in response to O(2) levels, and Rhodobacter capsulatus DctS of the DctS-DctR TCS, which controls synthesis of the high-affinity C4-dicarboxylate transport system. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and PAS sensor domain(s); many are hybrid sensor histidine kinases as they also contain a REC signal receiver domain.


Pssm-ID: 340397 [Multi-domain]  Cd Length: 104  Bit Score: 75.90  E-value: 9.46e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 424 VVGNLVDNALEAVAGTPAPRR---VRvFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKSTGRGLGLALVGQVVRR 500
Cdd:cd16920     4 VLINLVRNGIEAMSEGGCERReltIR-TSPADDRAVTISVKDTGPGIAEEVAGQLFDPFYTTKSEGLGMGLSICRSIIEA 82
                          90       100
                  ....*....|....*....|..
gi 2491029784 501 HGGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16920    83 HGGRLSVESPAGGGATFQFTLP 104
PRK11100 PRK11100
sensory histidine kinase CreC; Provisional
290-524 5.77e-16

sensory histidine kinase CreC; Provisional


Pssm-ID: 236846 [Multi-domain]  Cd Length: 475  Bit Score: 80.27  E-value: 5.77e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 290 VANQRTARF------EGAALGTVL-TLRDQTE--------LRTLASELDS----VRALTEALQ------------AQTHE 338
Cdd:PRK11100  220 VTEGKPVPLpklgssELRELAQALeSMRVKLEgkayveqyVQTLTHELKSplaaIRGAAELLQedpppedrarftGNILT 299
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 339 SANRLHTVL-TLVELGRTEEAVRLGTRDLALAQQLTDRVVGAVtEPALAAlllgKSAQAGERGVDLVVEPDcrlddsplp 417
Cdd:PRK11100  300 QSARLQQLIdRLLELARLEQRQELEVLEPVALAALLEELVEAR-EAQAAA----KGITLRLRPDDARVLGD--------- 365
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 418 tADLLT-VVGNLVDNALEAvagTPAPRRVRVFVGAADDELVVRVADSGPGL---APERVADAF----RRGWSTKSTGrgL 489
Cdd:PRK11100  366 -PFLLRqALGNLLDNAIDF---SPEGGTITLSAEVDGEQVALSVEDQGPGIpdyALPRIFERFyslpRPANGRKSTG--L 439
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2491029784 490 GLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLPSR 524
Cdd:PRK11100  440 GLAFVREVARLHGGEVTLRNRPEGGVLATLTLPRH 474
HATPase_AtoS-like cd16943
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
419-522 2.03e-15

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli AtoS, an HK of the AtoS-AtoC TCS. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have accessory domains such as HAMP or PAS sensor domains or CBS-pair domains.


Pssm-ID: 340419 [Multi-domain]  Cd Length: 105  Bit Score: 72.07  E-value: 2.03e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 419 ADLLTVVGNLVDNALEAVAGTPaprRVRVFVGAADDELVVRVADSGPGLAPE---RVADAFrrgWSTK--STGRGLGLAL 493
Cdd:cd16943     2 SQLNQVLLNLLVNAAQAMEGRG---RITIRTWAHVDQVLIEVEDTGSGIDPEilgRIFDPF---FTTKpvGEGTGLGLSL 75
                          90       100
                  ....*....|....*....|....*....
gi 2491029784 494 VGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16943    76 SYRIIQKHGGTIRVASVPGGGTRFTIILP 104
HATPase_HupT_MifS-like cd16976
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
424-521 2.80e-15

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Rhodobacter capsulatus HupT and Pseudomonas aeruginosa MifS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Rhodobacter capsulatus HupT of the HupT-HupR two-component regulatory system (TCS), which regulates the synthesis of HupSL, a membrane bound [NiFe]hydrogenase. It also contains the HATPase domain of Pseudomonas aeruginosa MifS, the HK of the MifS-MifR TCS, which may be involved in sensing alpha-ketoglutarate and regulating its transport and subsequent metabolism. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some also have a C-terminal PAS sensor domain.


Pssm-ID: 340435 [Multi-domain]  Cd Length: 102  Bit Score: 71.72  E-value: 2.80e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 424 VVGNLVDNALEAVAGTPAPRrVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKSTGRGLGLALV--GQVVRRH 501
Cdd:cd16976     4 VLMNLLQNALDAMGKVENPR-IRIAARRLGGRLVLVVRDNGPGIAEEHLSRVFDPFFTTKPVGKGTGLGLSisYGIVEEH 82
                          90       100
                  ....*....|....*....|
gi 2491029784 502 GGSAEVDRSDDGGSLFTVRL 521
Cdd:cd16976    83 GGRLSVANEEGAGARFTFDL 102
COG4251 COG4251
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ...
63-522 3.26e-14

Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];


Pssm-ID: 443393 [Multi-domain]  Cd Length: 503  Bit Score: 75.21  E-value: 3.26e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  63 ALITADPASILQPYAESTRLATGTDFVVVMAPDRTRFSHPTRERIGQPFVGEIGPALAGRPFTTTNVGTLGESVRAVVPV 142
Cdd:COG4251     1 LLLLALLLLLLLLLLLLLLLLLLLLLVLLLALALLLLLALLVLLLLLIRLLLLLLLSLLALLLLLLLLLLLLLVLAALAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 143 YDEQRHLVGLVSVGITTRAIDRKLLGQLPVLFGVAAPALALAATGSWLLSRRLRRQTHGLgpAQMTRMYEYYDAVLHSVR 222
Cdd:COG4251    81 LLLLLLLELALVLLALLLVLLLLLALLLLLALLLLLELLLLLLALLLLLLLLALLLLEEL--ALLRLALALLLLLLLLLL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 223 EGLVVLTTDRRVALVNDEGRRLLGLDADAPVIDQPVAGIDLPPAAAELLDSGRDARDEPILAGDRVLVANQRTARFEGAA 302
Cdd:COG4251   159 LLLLLLALILALLLAALAELELLLLLLLVLLLLLLLLLLLLLLLLRLLLELLLLLEAELLLSLGGGLGLLLLLLLLLVLL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 303 LGTVLTLRDQTELRTLASELDSVRALTEALQAQTH--ESANR----------------LHTVLTLVELGRTEEAVRL--- 361
Cdd:COG4251   239 LLLILLLLLLILVLELLELRLELEELEEELEERTAelERSNEeleqfayvashdlrepLRKISGFSQLLEEDYGDKLdee 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 362 GTRDLALAQQLTDRV------------VGAVTEP--------ALAALLLGKSAQAGERGVDLVVEPdcrlddspLPTAD- 420
Cdd:COG4251   319 GREYLERIRDAAERMqaliddllaysrVGRQELEfepvdlneLLEEVLEDLEPRIEERGAEIEVGP--------LPTVRg 390
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 421 ----LLTVVGNLVDNALEAVAGTPAPRrVRVFVGAADDELVVRVADSGPGLAP---ERVADAFRRGWS-TKSTGRGLGLA 492
Cdd:COG4251   391 dptlLRQVFQNLISNAIKYSRPGEPPR-IEIGAEREGGEWVFSVRDNGIGIDPeyaEKIFEIFQRLHSrDEYEGTGIGLA 469
                         490       500       510
                  ....*....|....*....|....*....|
gi 2491029784 493 LVGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:COG4251   470 IVKKIVERHGGRIWVESEPGEGATFYFTLP 499
HATPase_NtrY-like cd16944
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
424-522 3.73e-13

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Azorhizobium caulinodans NtrY; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Azorhizobium caulinodans ORS571 NtrY of the NtrY-NtrX TCS, which is involved in nitrogen fixation and metabolism. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and a HAMP sensor domain; some also have PAS sensor domains.


Pssm-ID: 340420 [Multi-domain]  Cd Length: 108  Bit Score: 65.64  E-value: 3.73e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 424 VVGNLVDNALEAVAGTPAPR-RVRVFVGA-ADDELVVRVADSGPGLAPERVADAFRRGWSTKSTGRGLGLALVGQVVRRH 501
Cdd:cd16944     8 VLTNILKNAAEAIEGRPSDVgEVRIRVEAdQDGRIVLIVCDNGKGFPREMRHRATEPYVTTRPKGTGLGLAIVKKIMEEH 87
                          90       100
                  ....*....|....*....|.
gi 2491029784 502 GGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16944    88 GGRISLSNREAGGACIRIILP 108
HATPase_RstB-like cd16939
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
424-522 1.21e-12

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Salmonella typhimurium RstB; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Salmonella typhimurium RstB HK of the RstA-RstB two-component regulatory system (TCS), which regulates expression of the constituents participating in pyrimidine metabolism and iron acquisition, and may be required for regulation of Salmonella motility and invasion. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), and a HAMP sensor domain.


Pssm-ID: 340416 [Multi-domain]  Cd Length: 104  Bit Score: 63.99  E-value: 1.21e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 424 VVGNLVDNALEAvagtpAPRRVRVFVGAADDELVVRVADSGPGLAP---ERVADAFRR---GWSTKSTGRGLGLALVGQV 497
Cdd:cd16939     4 ALDNLLRNALRY-----AHRTVRIALLVSGGRLTLIVEDDGPGIPAaarERVFEPFVRldpSRDRATGGFGLGLAIVHRV 78
                          90       100
                  ....*....|....*....|....*
gi 2491029784 498 VRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16939    79 ALWHGGHVECDDSELGGACFRLTWP 103
KinE COG5809
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ...
212-524 1.22e-12

Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 444511 [Multi-domain]  Cd Length: 489  Bit Score: 70.00  E-value: 1.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 212 EYYDAVLHSVREGLVVLTTDRRVALVNDEGRRLLGLDaDAPVIDQPVAGIdLPPAAAELLDSG--RDARDEPILAGDRVL 289
Cdd:COG5809   141 EKFRLIFNHSPDGIIVTDLDGRIIYANPAACKLLGIS-IEELIGKSILEL-IHSDDQENVAAFisQLLKDGGIAQGEVRF 218
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 290 VANQ---RTARFEGAAL-------GTVLTLRDQTELR------------TLASE------------LDSVRALTEALQAQ 335
Cdd:COG5809   219 WTKDgrwRLLEASGAPIkkngevdGIVIIFRDITERKkleellrkseklSVVGElaagiaheirnpLTSLKGFIQLLKDT 298
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 336 THEsANRLHTVLTLVELGRTE------------EAVRLGTRDLalaqqltDRVVGAVTEpalaalLLgkSAQAGERGVDL 403
Cdd:COG5809   299 IDE-EQKTYLDIMLSELDRIEsiiseflvlakpQAIKYEPKDL-------NTLIEEVIP------LL--QPQALLKNVQI 362
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 404 VVEPDcrlDDSPLPTAD---LLTVVGNLVDNALEAvagTPAPRRVRVFVGAADDELVV-RVADSGPGLAPERVADAFRRG 479
Cdd:COG5809   363 ELELE---DDIPDILGDenqLKQVFINLLKNAIEA---MPEGGNITIETKAEDDDKVViSVTDEGCGIPEERLKKLGEPF 436
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 2491029784 480 WSTKSTGRGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLPSR 524
Cdd:COG5809   437 YTTKEKGTGLGLMVSYKIIEEHGGKITVESEVGKGTTFSITLPIK 481
PRK10604 PRK10604
sensor protein RstB; Provisional
314-524 2.08e-12

sensor protein RstB; Provisional


Pssm-ID: 236724 [Multi-domain]  Cd Length: 433  Bit Score: 68.86  E-value: 2.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 314 ELRTLASELDSVRALTEALQAQTHESANR--------LHTVLTLVELGRTEeaVRLGTRDLALAQQLTDRVVGAVTepal 385
Cdd:PRK10604  222 ELRTPLVRLRYRLEMSDNLSAAESQALNRdigqlealIEELLTYARLDRPQ--NELHLSEPDLPAWLSTHLADIQA---- 295
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 386 aalllgksaqagergvdlvVEPDCRLDDSPLPTADLLT--------VVGNLVDNALEAVAGtpaprRVRVFVGAADDELV 457
Cdd:PRK10604  296 -------------------VTPEKTVRLDTPHQGDYGAldmrlmerVLDNLLNNALRYAHS-----RVRVSLLLDGNQAC 351
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2491029784 458 VRVADSGPGLAP---ERVADAFRR---GWSTKSTGRGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLPSR 524
Cdd:PRK10604  352 LIVEDDGPGIPPeerERVFEPFVRldpSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVW 424
HATPase_BasS-like cd16940
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
421-521 2.11e-12

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli BasS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) similar to Escherichia coli BasS HK of the BasS-BasR two-component regulatory system (TCS). Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some contain a HAMP sensory domain, while some an N-terminal two-component sensor kinase domain.


Pssm-ID: 340417 [Multi-domain]  Cd Length: 113  Bit Score: 63.58  E-value: 2.11e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 421 LLTVVGNLVDNALEAvagTPAPRRVRVFVgAADDELVVRVADSGPGLAPE---RVADAFRRGWSTKSTGRGLGLALVGQV 497
Cdd:cd16940    14 LFLLLRNLVDNAVRY---SPQGSRVEIKL-SADDGAVIRVEDNGPGIDEEeleALFERFYRSDGQNYGGSGLGLSIVKRI 89
                          90       100
                  ....*....|....*....|....
gi 2491029784 498 VRRHGGSAEVDRSDDGGSLFTVRL 521
Cdd:cd16940    90 VELHGGQIFLGNAQGGGLEAWVRL 113
HATPase_TutC-TodS-like cd16925
Histidine kinase-like ATPase domain of hybrid sensor histidine kinases similar to Pseudomonas ...
424-522 2.42e-12

Histidine kinase-like ATPase domain of hybrid sensor histidine kinases similar to Pseudomonas putida TodS and Thauera aromatica TutC; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component hybrid sensor histidine kinase (HKs) such Pseudomonas putida TodS HK of the TodS-TodT two-component regulatory system (TCS) which controls the expression of a toluene degradation pathway. Thauera aromatica TutC may be part of a TCS that is involved in anaerobic toluene metabolism. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), PAS sensor domain(s) and a REC domain.


Pssm-ID: 340402 [Multi-domain]  Cd Length: 110  Bit Score: 63.67  E-value: 2.42e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 424 VVGNLVDNALEAvagTPAPRRVRVFVGAAD-DELVVRVADSGPGLAP---ERVADAFRRGWSTKST---GRGLGLALVGQ 496
Cdd:cd16925     8 VVLNLLSNAFKF---TPDGGRIRCILEKFRlNRFLLTVSDSGPGIPPnlrEEIFERFRQGDGSSTRahgGTGLGLSIVKE 84
                          90       100
                  ....*....|....*....|....*.
gi 2491029784 497 VVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16925    85 FVELHGGTVTVSDAPGGGALFQVELP 110
PRK10364 PRK10364
two-component system sensor histidine kinase ZraS;
393-527 2.99e-12

two-component system sensor histidine kinase ZraS;


Pssm-ID: 236674 [Multi-domain]  Cd Length: 457  Bit Score: 68.66  E-value: 2.99e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 393 SAQAGERGVDLVVEPDCRLDDSPLPTADLLTVVGNLVDNALEAVagtPAPRRVRVFVGAADDELVVRVADSGPGLAPERV 472
Cdd:PRK10364  321 SQDANSREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAI---GQHGVISVTASESGAGVKISVTDSGKGIAADQL 397
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2491029784 473 ADAFRRGWSTKSTGRGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLPSRIER 527
Cdd:PRK10364  398 EAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVNITR 452
HATPase_AgrC-ComD-like cd16935
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
384-512 7.08e-12

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Staphylococcus aureus AgrC which is an HK of the accessory gene regulator (agr) quorum sensing two-component regulatory system (TCS) AgrC-AgrA. The agr system plays a part in the transition from persistent to virulent phenotype. This family also includes Streptococcus pneumoniae ComD HK of the ComD-ComE TCS, involved in quorum sensing and genetic competence.


Pssm-ID: 340412 [Multi-domain]  Cd Length: 134  Bit Score: 62.98  E-value: 7.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 384 ALAALLLGKSAQAGERGVDLvvepDCRLDDS---PLPTADLLTVVGNLVDNALEAVAGTPAPRR-VRVFVGAADDELVVR 459
Cdd:cd16935     1 ALDSLLSEKLELAREKGIEF----TIEIDIPillPISPLDLCIIFGNLLDNAIEACAKIDKENRfIHLKIRQKKGFLIIS 76
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2491029784 460 VADSGPGLAPERVAdafrRGWSTKS-TGRGLGLALVGQVVRRHGGSAEVDRSDD 512
Cdd:cd16935    77 IENSYEGELKKKNG----LFLSTKKdKNHGIGLKSIREIVKKYNGNLSIEYENG 126
KinA COG5805
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle ...
427-522 8.89e-12

Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 444507 [Multi-domain]  Cd Length: 496  Bit Score: 67.45  E-value: 8.89e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 427 NLVDNALEAVagtPAPRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKSTGRGLGLALVGQVVRRHGGSAE 506
Cdd:COG5805   402 NLIKNAIEAM---PNGGTITIHTEEEDNSVIIRVIDEGIGIPEERLKKLGEPFFTTKEKGTGLGLMVSYKIIENHNGTID 478
                          90
                  ....*....|....*.
gi 2491029784 507 VDRSDDGGSLFTVRLP 522
Cdd:COG5805   479 IDSKVGKGTTFTITLP 494
HATPase_EnvZ-like cd16950
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
424-522 1.09e-11

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli EnvZ and Pseudomonas aeruginosa BfmS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Escherichia coli EnvZ of the EnvZ-OmpR two-component regulatory system (TCS), which functions in osmoregulation. It also contains the HATPase domain of Pseudomonas aeruginosa BfmS, the HK of the BfmSR TCS, which functions in the regulation of the rhl quorum-sensing system and bacterial virulence in P. aeruginosa. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and a HAMP sensor domain; some also contain a periplasmic domain.


Pssm-ID: 340426 [Multi-domain]  Cd Length: 101  Bit Score: 61.31  E-value: 1.09e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 424 VVGNLVDNALEAVAGTpaprrVRVFVGAADDELVVRVADSGPGLAPERVADAFR---RGWSTKST-GRGLGLALVGQVVR 499
Cdd:cd16950     4 VLSNLVDNALRYGGGW-----VEVSSDGEGNRTRIQVLDNGPGIAPEEVDELFQpfyRGDNARGTsGTGLGLAIVQRISD 78
                          90       100
                  ....*....|....*....|...
gi 2491029784 500 RHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16950    79 AHGGSLTLANRAGGGLCARIELP 101
cztS_silS_copS TIGR01386
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain ...
396-522 5.85e-11

heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.


Pssm-ID: 273593 [Multi-domain]  Cd Length: 457  Bit Score: 64.72  E-value: 5.85e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 396 AGERGVDLVVEPDCRLDDSPLPtadLLTVVGNLVDNALEAvagTPAPRRVRVFVGAADDELVVRVADSGPGLAPE---RV 472
Cdd:TIGR01386 332 AEERGVRIRVEGEGLVRGDPQM---FRRAISNLLSNALRH---TPDGGTITVRIERRSDEVRVSVSNPGPGIPPEhlsRL 405
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2491029784 473 ADAFRRG---WSTKSTGRGLGLALVGQVVRRHGGSAEVDrSDDGGSLFTVRLP 522
Cdd:TIGR01386 406 FDRFYRVdpaRSNSGEGTGLGLAIVRSIMEAHGGRASAE-SPDGKTRFILRFP 457
HATPase_PhoQ-like cd16954
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
420-521 9.96e-11

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG; This family includes histidine kinase-like ATPase (HATPase) domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG. PhoQ is the histidine kinase (HK) of the PhoP-PhoQ two-component regulatory system (TCS), which responds to the levels of Mg2+ and Ca2+, controls virulence, mediates the adaptation to Mg2+-limiting environments, and regulates numerous cellular activities. Providencia stuartii AarG is a putative sensor kinase which controls the expression of the 2'-N-acetyltransferase and an intrinsic multiple antibiotic resistance (Mar) response in Providencia stuartii. The AarG product is similar to PhoQ in that it is able to restore wild-type levels of resistance to a Salmonella typhimurium phoQ mutant. However, the expression of the 2'-N-acetyltransferase gene and of aarP (a gene encoding a transcriptional activator of 2'-N-acetyltransferase) are not significantly affected by the levels of Mg2+ or Ca2+. Most proteins in this group contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have an accessory HAMP sensor domain, and some have an intracellular membrane -interaction PhoQ sensor domain.


Pssm-ID: 340430 [Multi-domain]  Cd Length: 135  Bit Score: 59.57  E-value: 9.96e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 420 DLLTVVGNLVDNAleavaGTPAPRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRG--WSTKSTGRGLGLALVGQV 497
Cdd:cd16954    37 DLMELLGNLLDNA-----CKWCLEFVEVTARQTDGGLHLIVDDDGPGVPESQRSKIFQRGqrLDEQRPGQGLGLAIAKEI 111
                          90       100
                  ....*....|....*....|....
gi 2491029784 498 VRRHGGSAEVDRSDDGGSLFTVRL 521
Cdd:cd16954   112 VEQYGGELSLSDSPLGGARFEVVF 135
HATPase_VanS-like cd16923
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
424-522 1.02e-10

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Enterococcus faecium VanS HK of the VanS-VanR two-component regulatory system (TCS) which activates the transcription of vanH, vanA and vanX vancomycin resistance genes. It also contains Ecoli YedV and PcoS, probable members of YedW-YedV TCS and PcoS-PcoR TCS, repectively. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); most also have a HAMP sensor domain.


Pssm-ID: 340400 [Multi-domain]  Cd Length: 102  Bit Score: 58.55  E-value: 1.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 424 VVGNLVDNAleaVAGTPAPRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGW----STKSTGRGLGLALVGQVVR 499
Cdd:cd16923     4 VFSNLLSNA---IKYSPENTRIYITSFLTDDVVNIMFKNPSSHPLDFKLEKLFERFYrgdnSRNTEGAGLGLSIAKAIIE 80
                          90       100
                  ....*....|....*....|...
gi 2491029784 500 RHGGSAEVdRSDDGGSLFTVRLP 522
Cdd:cd16923    81 LHGGSASA-EYDDNHDLFKVRLP 102
HATPase_CpxA-like cd16949
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
427-522 1.10e-10

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli CpxA; This family includes the histidine kinase-like ATPase (HATPase) domains of two-component sensor histidine kinase (HKs) similar to Escherichia coli CpxA, HK of the CpxA-CpxR two-component regulatory system (TCS) which may function in acid stress and in cell wall stability. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and a HAMP sensor domain; some also contain a CpxA family periplasmic domain.


Pssm-ID: 340425 [Multi-domain]  Cd Length: 104  Bit Score: 58.49  E-value: 1.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 427 NLVDNALEAvagtpAPRRVRVFVGAADDELVVRVADSGPGLAPERVADAFR------RGWSTKSTGRGLGLALVGQVVRR 500
Cdd:cd16949     7 NVLRNALRY-----SPSKILLDISQDGDQWTITITDDGPGVPEDQLEQIFLpfyrvdSARDRESGGTGLGLAIAERAIEQ 81
                          90       100
                  ....*....|....*....|..
gi 2491029784 501 HGGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16949    82 HGGKIKASNRKPGGLRVRIWLP 103
HATPase_Glnl-NtrB-like cd16918
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
421-522 2.14e-10

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli GlnL (synonyms NtrB and NRII); This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs), similar to Escherichia coli GlnL/NtrB/NRII HK of the two-component regulatory system (TCS) GlnL/GlnG (NtrB-NtrC, or NRII-NRI), which regulates the transcription of genes encoding metabolic enzymes and permeases in response to carbon and nitrogen status in E. coli and related bacteria. Also included in this family are Rhodobacter capsulatus NtrB, Azospirillum brasilense NtrB, Vibrio alginolyticus NtrB, Rhizobium leguminosarum biovar phaseoli NtrB, and Herbaspirillum seropedicae NtrB. Escherichia coli GlnL/NtrB/NRII is both a kinase and a phosphatase, catalyzing the phosphorylation and dephosphorylation of GlnG/NtrC/NRI. The kinase and phosphatase activities of GlnL/NtrB/NRII are regulated by the PII signal transduction protein, which on binding to GlnL/NtrB/NRII, inhibits the kinase activity of GlnL/NtrB/NRII and activates the GlnL/NtrB/NRII phosphatase activity. Proteins having this HATPase domain also have a histidine kinase dimerization and phosphoacceptor domain (HisKA); some also contain PAS sensor domain(s).


Pssm-ID: 340395 [Multi-domain]  Cd Length: 109  Bit Score: 57.80  E-value: 2.14e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 421 LLTVVGNLVDNALEAVAGTPAPRRVRVFV------GAADDELVVRVA--DSGPGLAPERVADAFRRGWSTKSTGRGLGLA 492
Cdd:cd16918     1 LIQVFLNLVRNAAQALAGSGGEIILRTRTqrqvtlGHPRHRLALRVSviDNGPGIPPDLQDTIFYPMVSGRENGTGLGLA 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 2491029784 493 LVGQVVRRHGGSAEVDrSDDGGSLFTVRLP 522
Cdd:cd16918    81 IAQNIVSQHGGVIECD-SQPGHTVFSVSLP 109
HATPase_BvrS-ChvG-like cd16953
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
421-522 2.55e-10

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Brucella abortus BvrS and Sinorhizobium meliloti ChvG; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Brucella abortus BvrS of the BvrR-BvrS two-component regulatory system (TCS), which controls cell invasion and intracellular survival, as well as Sinorhizobium meliloti and Agrobacterium tumefaciens ChvG of the ChvI-ChvG TCS necessary for endosymbiosis and pathogenicity in plants. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), an accessory HAMP sensor domain, a periplasmic stimulus-sensing domain, and some also have a sensor N-terminal transmembrane domain.


Pssm-ID: 340429 [Multi-domain]  Cd Length: 110  Bit Score: 57.58  E-value: 2.55e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 421 LLTVVGNLVDNALEAVAgtPAPRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKSTGR------GLGLALV 494
Cdd:cd16953     1 LGQVLRNLIGNAISFSP--PDTGRITVSAMPTGKMVTISVEDEGPGIPQEKLESIFDRFYTERPANEafgqhsGLGLSIS 78
                          90       100       110
                  ....*....|....*....|....*....|..
gi 2491029784 495 GQVVRRHGGSAEVD-RSDDG---GSLFTVRLP 522
Cdd:cd16953    79 RQIIEAHGGISVAEnHNQPGqviGARFTVQLP 110
HATPase_BaeS-like cd16946
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
421-522 4.64e-10

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli BasS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) similar to Escherichia coli BaeS HK of the BaeS/BaeR two-component regulatory system (TCS), which responds to envelope stress. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), and a HAMP sensory domain.


Pssm-ID: 340422 [Multi-domain]  Cd Length: 109  Bit Score: 57.09  E-value: 4.64e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 421 LLTVVGNLVDNALEAvagTPAPRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKST------GRGLGLALV 494
Cdd:cd16946     5 LQQLFVNLLENSLRY---TDTGGKLRIRAAQTPQEVRLDVEDSAPGVSDDQLARLFERFYRVESSrnrasgGSGLGLAIC 81
                          90       100
                  ....*....|....*....|....*...
gi 2491029784 495 GQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16946    82 HNIALAHGGTISAEHSPLGGLRLVLTLP 109
HATPase_EvgS-ArcB-TorS-like cd16922
Histidine kinase-like ATPase domain of two-component sensor histidine kinases, many are hybrid ...
424-522 9.14e-10

Histidine kinase-like ATPase domain of two-component sensor histidine kinases, many are hybrid sensor histidine kinases, similar to Escherichia coli EvgS, ArcB, TorS, BarA, RcsC; This family contains the histidine kinase-like ATPase (HATPase) domains of various two-component hybrid sensor histidine kinases (HKs), including the following Escherichia coli HKs: EvgS, a HK of the EvgS-EvgA two-component system (TCS) that confers acid resistance; ArcB, a HK of the ArcB-ArcA TCS that modulates the expression of numerous genes in response to respiratory growth conditions; TorS, a HK of the TorS-TorR TCS which is involved in the anaerobic utilization of trimethylamine-N-oxide; BarA, a HK of the BarA-UvrY TCS involved in the regulation of carbon metabolism; and RcsC, a HK of the RcsB-RcsC TCS which regulates the expression of the capsule operon and of the cell division gene ftsZ. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), with most having accessory sensor domain(s) such as GAF, PAS and CHASE; many are hybrid sensor histidine kinases as they also contain a REC signal receiver domain.


Pssm-ID: 340399 [Multi-domain]  Cd Length: 110  Bit Score: 55.96  E-value: 9.14e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 424 VVGNLVDNALEAvagTPAPR-RVRVFVGAADDE---LVVRVADSGPGLAPERVADAFRR------GWSTKSTGRGLGLAL 493
Cdd:cd16922     4 ILLNLLGNAIKF---TEEGEvTLRVSLEEEEEDgvqLRFSVEDTGIGIPEEQQARLFEPfsqadsSTTRKYGGTGLGLAI 80
                          90       100
                  ....*....|....*....|....*....
gi 2491029784 494 VGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16922    81 SKKLVELMGGDISVESEPGQGSTFTFTLP 109
envZ PRK09467
osmolarity sensor protein; Provisional
424-522 1.49e-09

osmolarity sensor protein; Provisional


Pssm-ID: 236531 [Multi-domain]  Cd Length: 435  Bit Score: 59.92  E-value: 1.49e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 424 VVGNLVDNALEAVAGtpaprRVRVFVGAADDELVVRVADSGPGLAPE---RVADAFRRGWSTKST-GRGLGLALVGQVVR 499
Cdd:PRK09467  335 ALANLVVNAARYGNG-----WIKVSSGTEGKRAWFQVEDDGPGIPPEqlkHLFQPFTRGDSARGSsGTGLGLAIVKRIVD 409
                          90       100
                  ....*....|....*....|...
gi 2491029784 500 RHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:PRK09467  410 QHNGKVELGNSEEGGLSARAWLP 432
HATPase_FilI-like cd16921
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
424-522 6.26e-09

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Methanosaeta harundinacea FilI and some hybrid sensor histidine kinases; This family includes FilI, the histidine kinase (HK) component of FilI-FilRs, a two-component signal transduction system (TCS) of the methanogenic archaeon, Methanosaeta harundinacea, which is involved in regulating methanogenesis. The cytoplasmic HK core consists of a C-terminal HK-like ATPase domain (represented here) and a histidine kinase dimerization and phosphoacceptor domain (HisKA) domain, which, in FilI, are coupled to CHASE, HAMP, PAS, and GAF sensor domains. FilI-FilRs catalyzes the phosphotransfer between FilI (HK) and FilRs (FilR1 and FilR2, response regulators) of the TCS. TCSs are predicted to be of bacterial origin, and acquired by archaea by horizontal gene transfer. This model also includes related HATPase domains such as that of Synechocystis sp. PCC6803 phytochrome-like protein Cph1. Proteins having this HATPase domain and HisKA domain also have accessory sensor domains such as CHASE, GAF, HAMP and PAS; some are hybrid sensor histidine kinases as they also contain a REC signal receiver domain.


Pssm-ID: 340398 [Multi-domain]  Cd Length: 105  Bit Score: 53.48  E-value: 6.26e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 424 VVGNLVDNALEaVAGTPAPRRVRVFVGAADDELVVRVADSGPGLAP---ERVADAFRRGWS-TKSTGRGLGLALVGQVVR 499
Cdd:cd16921     4 VLTNLLGNAIK-FRRPRRPPRIEVGAEDVGEEWTFYVRDNGIGIDPeyaEKVFGIFQRLHSrEEYEGTGVGLAIVRKIIE 82
                          90       100
                  ....*....|....*....|...
gi 2491029784 500 RHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16921    83 RHGGRIWLESEPGEGTTFYFTLP 105
HATPase_CheA-like cd16916
Histidine kinase-like ATPase domain of the chemotaxis protein histidine kinase CheA, and some ...
401-522 1.26e-08

Histidine kinase-like ATPase domain of the chemotaxis protein histidine kinase CheA, and some hybrid sensor histidine kinases; This family includes the cytoplasmic histidine kinase (HK) CheA, a transmembrane receptor which, together with cytoplasmic adaptor protein (CheW), forms the lattice at the core of the chemosensory array that controls the cellular chemotaxis of motile bacteria and archaea. CheA forms a two-component signal transduction system (TCS) with the response regulator CheY. Proteins having this CheA-like HATPase domain generally also have a histidine-phosphotransfer domain, a histidine kinase homodimeric domain, and a regulatory domain; some are hybrid sensor histidine kinases as they contain a REC signal receiver domain.


Pssm-ID: 340393 [Multi-domain]  Cd Length: 178  Bit Score: 54.51  E-value: 1.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 401 VDLVVE-PDCRLDDSPLPT-ADLLT-VVGNLVDNALEAV-----AGTPAPRRVRVFVGAADDELVVRVADSGPGLAPERV 472
Cdd:cd16916    20 VELVVEgEDTELDKSVLEKlADPLThLLRNAVDHGIEAPeerlaAGKPPEGTITLRAEHQGNQVVIEVSDDGRGIDREKI 99
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2491029784 473 -----------ADA-------------FRRGWSTKST-----GRGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16916   100 rekaierglitADEaatlsddevlnliFAPGFSTAEQvtdvsGRGVGMDVVKRSIESLGGTIEVESEPGQGTTFTIRLP 178
YesM COG2972
Sensor histidine kinase YesM [Signal transduction mechanisms];
312-526 1.64e-08

Sensor histidine kinase YesM [Signal transduction mechanisms];


Pssm-ID: 442211 [Multi-domain]  Cd Length: 445  Bit Score: 56.95  E-value: 1.64e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 312 QTELRTLASELdsvraltEALQAQT--HESANRLHTVLTLVELGRTEEAVRLgTRDLA-LAQQLTDRVVGAVT---EPAL 385
Cdd:COG2972   234 ELELEKKEAEL-------KALQAQInpHFLFNTLNSIRWLAELEDPEEAEEM-LEALSkLLRYSLSKGDELVTleeELEL 305
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 386 A-ALLLGKSAQAGERgVDLVVEpdcrLDDSPLPTADLLTVVGNLVDNALE-AVAGTPAPRRVRVFVGAADDELVVRVADS 463
Cdd:COG2972   306 IkSYLEIQKLRFGDR-LEVEIE----IDEELLDLLIPKLILQPLVENAIEhGIEPKEGGGTIRISIRKEGDRLVITVEDN 380
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2491029784 464 GPGLAPERVaDAFRRGWSTKSTGRGLGLALVGQVVRRHGGSA---EVDRSDDGGSLFTVRLPSRIE 526
Cdd:COG2972   381 GVGMPEEKL-EKLLEELSSKGEGRGIGLRNVRERLKLYYGEEyglEIESEPGEGTTVTIRIPLEEE 445
HATPase_c_5 pfam14501
GHKL domain; This family represents the structurally related ATPase domains of histidine ...
420-519 5.56e-08

GHKL domain; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 433996 [Multi-domain]  Cd Length: 102  Bit Score: 50.68  E-value: 5.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 420 DLLTVVGNLVDNALEAVAGTPAPRRVRVFVGAADDELVVRVADSGPGLAPERvadafRRGWSTKSTG--RGLGLALVGQV 497
Cdd:pfam14501   5 DLCVIFGNLLDNAIEACSKIDDNRFIRLKIREKQNFLIIRIENTYEGELKFE-----GKLPSTKTKGdgHGIGLKSIRRI 79
                          90       100
                  ....*....|....*....|..
gi 2491029784 498 VRRHGGSAEVDrSDDGgsLFTV 519
Cdd:pfam14501  80 VKKYGGNLSTE-IENG--IFTL 98
cpxA PRK09470
envelope stress sensor histidine kinase CpxA;
421-522 8.96e-08

envelope stress sensor histidine kinase CpxA;


Pssm-ID: 236532 [Multi-domain]  Cd Length: 461  Bit Score: 54.55  E-value: 8.96e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 421 LLTVVGNLVDNALEAvagtpAPRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWST------KSTGRGLGLALV 494
Cdd:PRK09470  354 LASALENIVRNALRY-----SHTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVdeardrESGGTGLGLAIV 428
                          90       100
                  ....*....|....*....|....*...
gi 2491029784 495 GQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:PRK09470  429 ENAIQQHRGWVKAEDSPLGGLRLTIWLP 456
PRK10549 PRK10549
two-component system sensor histidine kinase BaeS;
427-522 2.17e-07

two-component system sensor histidine kinase BaeS;


Pssm-ID: 182539 [Multi-domain]  Cd Length: 466  Bit Score: 53.48  E-value: 2.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 427 NLVDNALEAvagTPAPRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKST------GRGLGLALVGQVVRR 500
Cdd:PRK10549  359 NLLENSLRY---TDSGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSrnrasgGSGLGLAICLNIVEA 435
                          90       100
                  ....*....|....*....|..
gi 2491029784 501 HGGSAEVDRSDDGGSLFTVRLP 522
Cdd:PRK10549  436 HNGRIIAAHSPFGGVSITVELP 457
HATPase_CreC-like cd16945
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
425-514 2.22e-07

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli CreC; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Escherichia coli CreC of the CreC-CreB two-component regulatory system (TCS) involved in catabolic regulation. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), and accessory sensory domain(s) such as HAMP, CACHE or PAS.


Pssm-ID: 340421 [Multi-domain]  Cd Length: 106  Bit Score: 49.38  E-value: 2.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 425 VGNLVDNALEAvagTPAPRRVRVFVGAADDELVVRVADSGPGL---APERVADAF----RRGWSTKSTGrgLGLALVGQV 497
Cdd:cd16945     9 INNLLDNAIDF---SPEGGLIALQLEADTEGIELLVFDEGSGIpdyALNRVFERFyslpRPHSGQKSTG--LGLAFVQEV 83
                          90
                  ....*....|....*..
gi 2491029784 498 VRRHGGSAEVDRSDDGG 514
Cdd:cd16945    84 AQLHGGRITLRNRPDGV 100
HATPase_EcPhoR-like cd16952
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
421-524 2.33e-07

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoR; This family includes histidine kinase-like ATPase (HATPase) domain of two-component sensor histidine kinases similar to Escherichia coli or Vibrio cholera PhoR, the histidine kinase (HK) of PhoB-PhoR a two-component signal transduction system (TCS) involved in phosphate regulation. PhoR monitors extracellular inorganic phosphate (Pi) availability and PhoB, the response regulator, regulates transcription of genes of the phosphate regulon. PhoR is a bifunctional histidine autokinase/phospho-PhoB phosphatase; in phosphate deficiency, it autophosphorylates and Pi is transferred to PhoB, and when environmental Pi is abundant, it removes the phosphoryl group from phosphorylated PhoB. Other roles of PhoB-PhoR TCS have been described, including motility, biofilm formation, intestinal colonization, and virulence in V. cholera. E.coli PhoR and Bacillus subtilis PhoR (whose HATPase domain belongs to a different family) sense very different signals in each bacterium. In E. coli the PhoR signal comes from phosphate transport mediated by the PstSCAB2 phosphate transporter and the PhoU chaperone-like protein while in B. subtilis, the PhoR activation signal comes from wall teichoic acid (WTA) metabolism.


Pssm-ID: 340428 [Multi-domain]  Cd Length: 108  Bit Score: 49.12  E-value: 2.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 421 LLTVVGNLVDNAleaVAGTPAPRRVRVFVGAADDELVVRVADSGPGLAPE---RVADAFRR---GWSTKSTGRGLGLALV 494
Cdd:cd16952     1 LRSAFSNLVSNA---VKYTPPSDTITVRWSQEESGARLSVEDTGPGIPPEhipRLTERFYRvdiERCRNTGGTGLGLAIV 77
                          90       100       110
                  ....*....|....*....|....*....|
gi 2491029784 495 GQVVRRHGGSAEVDRSDDGGSLFTVRLPSR 524
Cdd:cd16952    78 KHVMSRHDARLLIASELGKGSRFTCLFPSS 107
KinB COG5806
Sporulation sensor histidine kinase B [Cell cycle control, cell division, chromosome ...
427-523 2.34e-07

Sporulation sensor histidine kinase B [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 444508 [Multi-domain]  Cd Length: 412  Bit Score: 52.95  E-value: 2.34e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 427 NLVDNALEAVA--GTpaprrVRVFVGAADDELVVRVADSGPGLAPERVAdafRRG---WSTKSTGRGLGLALVGQVVRRH 501
Cdd:COG5806   318 NIIKNGIEAMPngGT-----LTIDVSIDKNKVIISIKDTGVGMTKEQLE---RLGepyFSTKEKGTGLGTMVSYRIIEAM 389
                          90       100
                  ....*....|....*....|...
gi 2491029784 502 GGSAEVDrSDDG-GSLFTVRLPS 523
Cdd:COG5806   390 NGTIRVE-SEVGkGTTFTITLPL 411
phoR PRK11006
phosphate regulon sensor histidine kinase PhoR;
421-525 5.40e-07

phosphate regulon sensor histidine kinase PhoR;


Pssm-ID: 182895 [Multi-domain]  Cd Length: 430  Bit Score: 51.93  E-value: 5.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 421 LLTVVGNLVDNAleaVAGTPAPRRVRVFVGAADDELVVRVADSGPGLAPE---RVADAFRR---GWSTKSTGRGLGLALV 494
Cdd:PRK11006  318 LRSAISNLVYNA---VNHTPEGTHITVRWQRVPQGAEFSVEDNGPGIAPEhipRLTERFYRvdkARSRQTGGSGLGLAIV 394
                          90       100       110
                  ....*....|....*....|....*....|.
gi 2491029784 495 GQVVRRHGGSAEVDRSDDGGSLFTVRLPSRI 525
Cdd:PRK11006  395 KHALSHHDSRLEIESEVGKGTRFSFVLPERL 425
PRK10337 PRK10337
sensor protein QseC; Provisional
314-520 6.43e-07

sensor protein QseC; Provisional


Pssm-ID: 182388 [Multi-domain]  Cd Length: 449  Bit Score: 51.96  E-value: 6.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 314 ELRtlaSELDSVRALTEALQAQTHESANRLHTVLTLvELGrTEEAVRLGTRDLALAQQLTDRVVGAVTEPALAALL---- 389
Cdd:PRK10337  247 ELR---SPLAALKVQTEVAQLSDDDPQARKKALLQL-HAG-IDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLqsav 321
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 390 --LGKSAQAGerGVDLVVEpdcrLDDSPLPT---ADLLTV-VGNLVDNAleaVAGTPAPRRVRVFVGAADdelvVRVADS 463
Cdd:PRK10337  322 mdIYHTAQQA--GIDVRLT----LNAHPVIRtgqPLLLSLlVRNLLDNA---IRYSPQGSVVDVTLNARN----FTVRDN 388
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 464 GPGLAPE---RVADAFRRGWSTKSTGRGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVR 520
Cdd:PRK10337  389 GPGVTPEalaRIGERFYRPPGQEATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVS 448
RocR COG3829
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ...
206-337 7.71e-07

RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


Pssm-ID: 443041 [Multi-domain]  Cd Length: 448  Bit Score: 51.70  E-value: 7.71e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 206 QMTRMYEYYDAVLHSVREGLVVLTTDRRVALVNDEGRRLLGLDADApVIDQPVAGIDLPPAAAELLDSGRDARDEPILAG 285
Cdd:COG3829     5 ELKELEEELEAILDSLDDGIIVVDADGRITYVNRAAERILGLPREE-VIGKNVTELIPNSPLLEVLKTGKPVTGVIQKTG 83
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2491029784 286 D--RVLVANQRTARFEGAALGTVLTLRDQTELRTLASELDSvRALTEALQAQTH 337
Cdd:COG3829    84 GkgKTVIVTAIPIFEDGEVIGAVETFRDITELKRLERKLRE-EELERGLSAKYT 136
PRK09835 PRK09835
Cu(+)/Ag(+) sensor histidine kinase;
394-524 1.13e-06

Cu(+)/Ag(+) sensor histidine kinase;


Pssm-ID: 182101 [Multi-domain]  Cd Length: 482  Bit Score: 50.93  E-value: 1.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 394 AQAGERGVDLVVEPD-CRLDDSPLPtadLLTVVGNLVDNALEAvagTPAPRRVRVFVGAADDELVVRVADSGPGLAPE-- 470
Cdd:PRK09835  351 AWAEERGVELRFVGDpCQVAGDPLM---LRRAISNLLSNALRY---TPAGEAITVRCQEVDHQVQLVVENPGTPIAPEhl 424
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2491029784 471 -RVADAFRR---GWSTKSTGRGLGLALVGQVVRRHGGSAEVDrSDDGGSLFTVRLPSR 524
Cdd:PRK09835  425 pRLFDRFYRvdpSRQRKGEGSGIGLAIVKSIVVAHKGTVAVT-SDARGTRFVISLPRL 481
PRK10490 PRK10490
sensor protein KdpD; Provisional
413-522 3.29e-06

sensor protein KdpD; Provisional


Pssm-ID: 236701 [Multi-domain]  Cd Length: 895  Bit Score: 50.03  E-value: 3.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 413 DSPLptadLLTVVGNLVDNALEaVAGTPAPRRVRVFVGaaDDELVVRVADSGPGLAPER---VADAFRRGWSTKST-GRG 488
Cdd:PRK10490  775 DGPL----FERVLINLLENAVK-YAGAQAEIGIDAHVE--GERLQLDVWDNGPGIPPGQeqlIFDKFARGNKESAIpGVG 847
                          90       100       110
                  ....*....|....*....|....*....|....
gi 2491029784 489 LGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:PRK10490  848 LGLAICRAIVEVHGGTIWAENRPEGGACFRVTLP 881
RsbW COG2172
Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms];
419-513 3.80e-06

Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms];


Pssm-ID: 441775 [Multi-domain]  Cd Length: 127  Bit Score: 46.06  E-value: 3.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 419 ADLLTVVGNLVDNALEAVAGTPAPRRVRVFVGAADDELVVRVADSGPGLAPERVADafrrGWSTKSTGrGLGLALVGQVV 498
Cdd:COG2172    33 DDLVLAVSEAVTNAVRHAYGGDPDGPVEVELELDPDGLEIEVRDEGPGFDPEDLPD----PYSTLAEG-GRGLFLIRRLM 107
                          90
                  ....*....|....*
gi 2491029784 499 RRHggsaEVDRSDDG 513
Cdd:COG2172   108 DEV----EYESDPGG 118
PRK10815 PRK10815
two-component system sensor histidine kinase PhoQ;
399-519 6.44e-06

two-component system sensor histidine kinase PhoQ;


Pssm-ID: 182754 [Multi-domain]  Cd Length: 485  Bit Score: 48.86  E-value: 6.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 399 RGVDLVvepdcrLDDSPLPT-----ADLLTVVGNLVDNA----LEAVagtpaprrvRVFVGAADDELVVRVADSGPGLAP 469
Cdd:PRK10815  358 KGVNIT------LDISPEITfvgekNDFMEVMGNVLDNAckycLEFV---------EISARQTDEHLHIVVEDDGPGIPE 422
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2491029784 470 ERVADAFRRGW--STKSTGRGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTV 519
Cdd:PRK10815  423 SKRELIFDRGQraDTLRPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEV 474
PRK13837 PRK13837
two-component system VirA-like sensor kinase;
419-524 6.52e-06

two-component system VirA-like sensor kinase;


Pssm-ID: 237526 [Multi-domain]  Cd Length: 828  Bit Score: 48.91  E-value: 6.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 419 ADLLTVVGNLVDNALEA------------VAGTPAPRRVRVFVGAADDELVVRVADSGPGLAPERVADAFRRGWSTKSTG 486
Cdd:PRK13837  559 AELQQVLMNLCSNAAQAmdgagrvdislsRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRAGG 638
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2491029784 487 RGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLPSR 524
Cdd:PRK13837  639 TGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPS 676
HATPase_RsbW-like cd16936
Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase ...
421-513 1.58e-05

Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains; This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.


Pssm-ID: 340413 [Multi-domain]  Cd Length: 91  Bit Score: 43.41  E-value: 1.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 421 LLTVVGNLVDNALEAVAGTPAPRRVRVFVGAADDELVVRVADSGPGLAPERVADafrrgWSTKSTGRGLGLALVGQVVRR 500
Cdd:cd16936     1 VELAVSEAVTNAVRHAYRHDGPGPVRLELDLDPDRLRVEVTDSGPGFDPLRPAD-----PDAGLREGGRGLALIRALMDE 75
                          90
                  ....*....|...
gi 2491029784 501 HGgsaeVDRSDDG 513
Cdd:cd16936    76 VG----YRRTPGG 84
PRK10755 PRK10755
two-component system sensor histidine kinase PmrB;
314-528 2.16e-05

two-component system sensor histidine kinase PmrB;


Pssm-ID: 236751 [Multi-domain]  Cd Length: 356  Bit Score: 46.88  E-value: 2.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 314 ELRTlasELDSVRALTEALQAQTHESANRL--------HTVLTLVELGRTEEAvrlgtrdLALAQQLTDRVVGAVTEPAL 385
Cdd:PRK10755  147 ELRT---PLAGIRLHLELLEKQHHIDVAPLiarldqmmHTVEQLLQLARAGQS-------FSSGHYQTVKLLEDVILPSQ 216
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 386 AALllgkSAQAGERGVDLVVepdcrlddsPLPTADLlTVVG----------NLVDNALEAvagTPAPRRVRVFVGAADDE 455
Cdd:PRK10755  217 DEL----SEMLEQRQQTLLL---------PESAADI-TVQGdatllrlllrNLVENAHRY---SPEGSTITIKLSQEDGG 279
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2491029784 456 LVVRVADSGPGLAPERVAD---AFRRgWSTKSTGRGLGLALVGQVVRRHGGSAEV-DRSDDGGSLFTVRLPSRIERS 528
Cdd:PRK10755  280 AVLAVEDEGPGIDESKCGElskAFVR-MDSRYGGIGLGLSIVSRITQLHHGQFFLqNRQERSGTRAWVWLPKAQNVA 355
PksD COG3321
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
137-512 4.36e-05

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 46.40  E-value: 4.36e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  137 RAVVPVYDEQRHLVGLVSVGITTRAIDRKLLGQLPVLFGVAAPALALAATGSWLLSRRLRRQTHGLGPAQMTRMYEYYDA 216
Cdd:COG3321    860 RVPLPTYPFQREDAAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVALAAAA 939
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  217 VLHSVREGLVVLTTDRRVALVNDEGRRLLGLDADAPVIDQPVAGIDLPPAAAELLDSGRDARDEPILAGDRVLVA----- 291
Cdd:COG3321    940 AALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAAAALLLAAaaaaa 1019
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  292 NQRTARFEGAALGTVLTLRDQTELRTLASELDSVRALTEALQAQTHESANRLHTVLTLVELGRTEEAVRLGTRDLALAQQ 371
Cdd:COG3321   1020 ALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAALALAL 1099
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  372 LTDRVVGAVTEPALAALLLGKSAQAGERGVDLVVEPDCRLDDSPLPTADLLTVVGNLVDNALEAVAGTPAPRRVRVFVGA 451
Cdd:COG3321   1100 AALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLLALAL 1179
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2491029784  452 ADDELVVRVADSGPGLAPERVADAFRRGWSTKSTGRGLGLALVGQVVRRHGGSAEVDRSDD 512
Cdd:COG3321   1180 ALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAA 1240
PRK13557 PRK13557
histidine kinase; Provisional
355-521 6.73e-05

histidine kinase; Provisional


Pssm-ID: 237425 [Multi-domain]  Cd Length: 540  Bit Score: 45.43  E-value: 6.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 355 TEEAVRLGTRDLALA--QQLTDRVV---GAVTEPA-LAALLLGksaqaGERGVDLVVEPD---CRLDDSPLPTADLltvv 425
Cdd:PRK13557  213 AERAATLTQQLLAFArkQRLEGRVLnlnGLVSGMGeLAERTLG-----DAVTIETDLAPDlwnCRIDPTQAEVALL---- 283
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 426 gNLVDNALEAVAGtpaprRVRVFVGAADDEL-----------------VVRVADSGPGLAPE---RVADAFrrgWSTKST 485
Cdd:PRK13557  284 -NVLINARDAMPE-----GGRVTIRTRNVEIededlamyhglppgryvSIAVTDTGSGMPPEilaRVMDPF---FTTKEE 354
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2491029784 486 GRG--LGLALVGQVVRRHGGSAEVDRSDDGGSlfTVRL 521
Cdd:PRK13557  355 GKGtgLGLSMVYGFAKQSGGAVRIYSEVGEGT--TVRL 390
PRK09303 PRK09303
histidine kinase;
424-522 8.77e-05

histidine kinase;


Pssm-ID: 236462 [Multi-domain]  Cd Length: 380  Bit Score: 44.94  E-value: 8.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 424 VVGNLVDNALEAvagTPAPRRVRVFVGAADDELV-VRVADSGPGLaP----ERV-ADAFRRGWSTKSTGRGLGLALVGQV 497
Cdd:PRK09303  276 VLLNLLDNAIKY---TPEGGTITLSMLHRTTQKVqVSICDTGPGI-PeeeqERIfEDRVRLPRDEGTEGYGIGLSVCRRI 351
                          90       100
                  ....*....|....*....|....*
gi 2491029784 498 VRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:PRK09303  352 VRVHYGQIWVDSEPGQGSCFHFTLP 376
ComP COG4585
Signal transduction histidine kinase ComP [Signal transduction mechanisms];
442-522 1.07e-04

Signal transduction histidine kinase ComP [Signal transduction mechanisms];


Pssm-ID: 443642 [Multi-domain]  Cd Length: 252  Bit Score: 43.84  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 442 PRRVRVFVGAADDELVVRVADSGPGLAPERVAdafrrgwstkstGRGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRL 521
Cdd:COG4585   180 ATRVTVTLEVDDGELTLTVRDDGVGFDPEAAP------------GGGLGLRGMRERAEALGGTLTIGSAPGGGTRVRATL 247

                  .
gi 2491029784 522 P 522
Cdd:COG4585   248 P 248
COG3920 COG3920
Two-component sensor histidine kinase, HisKA and HATPase domains [Signal transduction ...
35-522 1.68e-04

Two-component sensor histidine kinase, HisKA and HATPase domains [Signal transduction mechanisms];


Pssm-ID: 443125 [Multi-domain]  Cd Length: 495  Bit Score: 44.13  E-value: 1.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  35 ARSDSRQAAQEEVLAVAQTVARSPDVRAALITADPASILQPYAESTRLATGTDFVVVMAPDRTRFSHPTRERIGQPFVGE 114
Cdd:COG3920     1 LLLALLLLLLLALAALLLLAALLLLAAALLLALLALLLLALLLLALLLASALLALLALSAAALAAALAVALAAAVGAAAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 115 IGPALAGRPFTTTNVGTLGESVRAVVPVYDEQRHLVGLVSVGITTRAIDRKLLGQLPVLFGVAAPALALAATGSWLLSRR 194
Cdd:COG3920    81 LLALLVLLLLLLLAAAALALALLLAALAGLLLLAALLLLRLVALLAALALLALLLLLLLLLAILALAELAVALAELAAAL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 195 LRRQTHGLGPAQMTRMYEYYDAVLHSVREGLVVLTTDRRVALVNDEGRRLLGLDADAPVIDQPVAGIDLPPAAAELLDSG 274
Cdd:COG3920   161 LLLAEELAALRLAAAALLLLLAALLDLGLALAALAAAALLALLLALELLLALLLLLLLLLALLLVLLAALLRLRAAVLEE 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 275 RDARDEPILAGDRVLVANQRTARFEGAALGTVLTLRDQTELRTLASELDSVRALTEALQAQT-HESANRLHTVLTLVEL- 352
Cdd:COG3920   241 LERRRRARGLGRLLLLLLLLLLLLRALLLLAAGIRLVITERKRAEEELEASLEEKELLLRELhHRVKNNLQVVSSLLRLq 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 353 --GRTEEAVRLGTRD-------LALAQQL---TDRVVGAVTEPALAALLLGKSAQAGERGVDLVVE-PDCRLDdsplptA 419
Cdd:COG3920   321 arRADDPEAREALEEsqnriqaLALVHELlyqSEDWEGVDLRDYLRELLEPLRDSYGGRGIRIELDgPDVELP------A 394
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 420 DLLTVVG---N-LVDNALE-AVAGTPAPrRVRVFVGAADDELVVRVADSGPGLAPErvadafrrgwSTKSTGRGLGLALV 494
Cdd:COG3920   395 DAAVPLGlilNeLVTNALKhAFLSGEGG-RIRVSWRREDGRLRLTVSDNGVGLPED----------VDPPARKGLGLRLI 463
                         490       500
                  ....*....|....*....|....*...
gi 2491029784 495 GQVVRRHGGSAEVDRSDdgGSLFTVRLP 522
Cdd:COG3920   464 RALVRQLGGTLELDRPE--GTRVRITFP 489
PRK09959 PRK09959
acid-sensing system histidine kinase EvgS;
424-525 2.93e-04

acid-sensing system histidine kinase EvgS;


Pssm-ID: 182169 [Multi-domain]  Cd Length: 1197  Bit Score: 43.95  E-value: 2.93e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784  424 VVGNLVDNALEAVAgTPAPRRVRVFVGAADDELVVR--VADSGPGLAPERVADAFRRGWST----KSTGRGLGLALVGQV 497
Cdd:PRK09959   832 VLSNLLSNALKFTT-EGAVKITTSLGHIDDNHAVIKmtIMDSGSGLSQEEQQQLFKRYSQTsagrQQTGSGLGLMICKEL 910
                           90       100
                   ....*....|....*....|....*...
gi 2491029784  498 VRRHGGSAEVDRSDDGGSLFTVRLPSRI 525
Cdd:PRK09959   911 IKNMQGDLSLESHPGIGTTFTITIPVEI 938
PRK04184 PRK04184
DNA topoisomerase VI subunit B; Validated
417-476 3.73e-04

DNA topoisomerase VI subunit B; Validated


Pssm-ID: 235246 [Multi-domain]  Cd Length: 535  Bit Score: 42.96  E-value: 3.73e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2491029784 417 PTADLLTVVGNLVDNALEA--VAGTPAPRRVRVF-VGAADDELVVRVADSGPGLAPERVADAF 476
Cdd:PRK04184   33 PARALYTTVKELVDNSLDAceEAGILPDIKIEIKrVDEGKDHYRVTVEDNGPGIPPEEIPKVF 95
PRK10841 PRK10841
two-component system sensor histidine kinase RcsC;
449-522 4.14e-04

two-component system sensor histidine kinase RcsC;


Pssm-ID: 182772 [Multi-domain]  Cd Length: 924  Bit Score: 43.04  E-value: 4.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 449 VGAADDELVVRVADSGPGLAPE---RVADAFRR---GWSTKSTGRGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:PRK10841  587 VRVDGDYLSFRVRDTGVGIPAKevvRLFDPFFQvgtGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIP 666
HATPase_UhpB-NarQ-NarX-like cd16917
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
443-522 5.51e-04

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli UhpB, NarQ and NarX, and Bacillus subtilis YdfH, YhcY and YfiJ; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli UhpB, a HK of the UhpB-UhpA TCS, NarQ and NarX, HKs of the NarQ-NarP and NarX-NarL TCSs, respectively, and Bacillus YdfH, YhcY and YfiJ HKs, of the YdfH-YdfI, YhcY-YhcZ and YfiJ-YfiK TCSs, respectively. In addition, it includes Bacillus YxjM, ComP, LiaS and DesK, HKs of the YxjM-YxjML, ComP-ComA, LiaS-LiaR, DesR-DesK TCSs, respectively. Proteins having this HATPase domain have a histidine kinase dimerization and phosphoacceptor domain; some have accessory domains such as GAF, HAMP, PAS and MASE sensor domains.


Pssm-ID: 340394 [Multi-domain]  Cd Length: 87  Bit Score: 39.07  E-value: 5.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 443 RRVRVFVGAADDELVVRVADSGPGLAPErvadafrrgwsTKSTGRGLGLALVGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16917    19 SRVRVTLSYTADELTLTVVDDGVGFDGP-----------APPGGGGFGLLGMRERAELLGGTLTIGSRPGGGTRVTARLP 87
HATPase_CckA-like cd16919
Histidine kinase-like ATPase domain of two-component sensor hybrid histidine kinases, similar ...
427-522 7.00e-04

Histidine kinase-like ATPase domain of two-component sensor hybrid histidine kinases, similar to Brucella abortus 2308 CckA; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component hybrid sensor histidine kinase (HKs) similar to Brucella abortus 2308 CckA, which is a component of an essential protein phosphorelay that regulates expression of genes required for growth, division, and intracellular survival; phosphoryl transfer initiates from the sensor kinase CckA and proceeds via the ChpT phosphotransferase to two regulatory substrates: the DNA-binding response regulator CtrA and the phospho-receiver protein CpdR. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), a REC signal receiver domain, and some contain PAS or PAS and GAF sensor domain(s).


Pssm-ID: 340396 [Multi-domain]  Cd Length: 116  Bit Score: 39.29  E-value: 7.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 427 NLVDNALEAVAG----TPAPRRVRVFVGAAD--------DELVVRVADSGPGLAPERVADAFRRGWSTKSTGR--GLGLA 492
Cdd:cd16919     7 NLAVNARDAMPEggrlTIETSNQRVDADYALnyrdlipgNYVCLEVSDTGSGMPAEVLRRAFEPFFTTKEVGKgtGLGLS 86
                          90       100       110
                  ....*....|....*....|....*....|
gi 2491029784 493 LVGQVVRRHGGSAEVDRSDDGGSLFTVRLP 522
Cdd:cd16919    87 MVYGFVKQSGGHLRIYSEPGVGTTVRIYLP 116
COG4192 COG4192
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal ...
424-504 7.84e-04

Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms];


Pssm-ID: 443346 [Multi-domain]  Cd Length: 640  Bit Score: 42.37  E-value: 7.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 424 VVGNLVDNALEAVAgtpAPRRVRVFVGAADDELVVRVADSGPGLAperVADA-FRRGWSTKSTGRGLGLALVGQVVRRHG 502
Cdd:COG4192   547 VLVNLLVNALDAVA---TQPQISVDLLSNAENLRVAISDNGNGWP---LVDKlFTPFTTTKEVGLGLGLSICRSIMQQFG 620

                  ..
gi 2491029784 503 GS 504
Cdd:COG4192   621 GD 622
PRK11466 PRK11466
hybrid sensory histidine kinase TorS; Provisional
424-527 8.53e-04

hybrid sensory histidine kinase TorS; Provisional


Pssm-ID: 236914 [Multi-domain]  Cd Length: 914  Bit Score: 42.20  E-value: 8.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 424 VVGNLVDNALEAVAGTpaprRVRVFVGAADDELVVRVADSGPGLAPERVADAFRR--GWSTKSTGRGLGLALVGQVVRRH 501
Cdd:PRK11466  565 VITNLLSNALRFTDEG----SIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPfvQVSGKRGGTGLGLTISSRLAQAM 640
                          90       100
                  ....*....|....*....|....*.
gi 2491029784 502 GGSAEVDRSDDGGSLFTVRLPSRIER 527
Cdd:PRK11466  641 GGELSATSTPEVGSCFCLRLPLRVAT 666
HATPase_SpaK_NisK-like cd16975
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
421-520 5.61e-03

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis SpaK and Lactococcus lactis NisK; This family includes histidine kinase-like ATPase (HATPase) domain of two-component sensor histidine kinases similar to Bacillus subtilis SpaK and Lactococcus lactis NisK. SpaK is the histidine kinase (HK) of the SpaK-SpaR two-component regulatory system (TCS), which is involved in the regulation of the biosynthesis of lantibiotic subtilin. NisK is the HK of the NisK-NisR TCS, which is involved in the regulation of the biosynthesis of lantibiotic nisin. SpaK and NisK may function as membrane-associated protein kinases that phosphorylate SpaR and NisR, respectively, in response to environmental signals.


Pssm-ID: 340434 [Multi-domain]  Cd Length: 107  Bit Score: 36.67  E-value: 5.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491029784 421 LLTVVGNLVDNALEAvagtpAPRRVRVFVGAADDE--LVVRVADSGPGLAPERVADA---FRRGWSTKSTGR--GLGLAL 493
Cdd:cd16975     5 LSRALINIISNACQY-----APEGGTVSISIYDEEeyLYFEIWDNGHGFSEQDLKKAlelFYRDDTSRRSGGhyGMGLYI 79
                          90       100
                  ....*....|....*....|....*..
gi 2491029784 494 VGQVVRRHGGSAEVDRSDDGGSLFTVR 520
Cdd:cd16975    80 AKNLVEKHGGSLIIENSQKGGAEVTVK 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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