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Conserved domains on  [gi|2495636605|ref|WP_279895140|]
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cyd operon protein YbgE [Pasteurella multocida]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cyd_oper_YbgE super family cl11451
Cyd operon protein YbgE (Cyd_oper_YbgE); This entry describes a small protein of unknown ...
 2-93 2.18e-27

Cyd operon protein YbgE (Cyd_oper_YbgE); This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.


The actual alignment was detected with superfamily member TIGR02112:

Pssm-ID: 472185  Cd Length: 93  Bit Score: 95.50  E-value: 2.18e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495636605  2 INSIYQIFNKGSLRTLSFILAVLLTLFFFLNINHFSTNLRSEPVLLVLIIIWGTGVLWIHGIGFEIRNTFWKALFLPLIG 81
Cdd:TIGR02112  1 IASLYELMDKGLLRALSFILAFLLAGCVFWDPNRFAAAIGGFNAVLALLMIWAVCILWIHGVGFRPRSTLWQLLFSPILG 80

                         90
                 ....*....|..
gi 2495636605 82 YIGFILAIVVSW 93
Cdd:TIGR02112 81 YIILIYLLIVFF 92
 
Name Accession Description Interval E-value
cyd_oper_ybgE TIGR02112
cyd operon protein YbgE; This model describes a small protein of unknown function, about 100 ...
 2-93 2.18e-27

cyd operon protein YbgE; This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria. [Energy metabolism, Electron transport]


Pssm-ID: 131167  Cd Length: 93  Bit Score: 95.50  E-value: 2.18e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495636605  2 INSIYQIFNKGSLRTLSFILAVLLTLFFFLNINHFSTNLRSEPVLLVLIIIWGTGVLWIHGIGFEIRNTFWKALFLPLIG 81
Cdd:TIGR02112  1 IASLYELMDKGLLRALSFILAFLLAGCVFWDPNRFAAAIGGFNAVLALLMIWAVCILWIHGVGFRPRSTLWQLLFSPILG 80

                         90
                 ....*....|..
gi 2495636605 82 YIGFILAIVVSW 93
Cdd:TIGR02112 81 YIILIYLLIVFF 92
YbgE COG3790
Predicted membrane protein, encoded in cydAB operon [Function unknown];
1-94 3.43e-25

Predicted membrane protein, encoded in cydAB operon [Function unknown];


Pssm-ID: 443004  Cd Length: 98  Bit Score: 89.95  E-value: 3.43e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495636605  1 MINSIYQIFNKGSLRTLSFILAVLLTLFFFLNINHFSTNLRSEPVLLVLIIIWGTGVLWIHGIGFEIRNTFWKALFLPLI 80
Cdd:COG3790    4 MIDSLYQLTDKGPLRALSLILALALAGCVLWDPSRFAARTGGLSHWLGLLLIWAVCAGFIHGVGFRPRRWLWRLLFSPLL 83

                         90
                 ....*....|....
gi 2495636605 81 GYIGFILAIVVSWV 94
Cdd:COG3790   84 AYLILIAGLYYFFL 97
Cyd_oper_YbgE pfam09600
Cyd operon protein YbgE (Cyd_oper_YbgE); This entry describes a small protein of unknown ...
 14-89 7.42e-16

Cyd operon protein YbgE (Cyd_oper_YbgE); This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.


Pssm-ID: 430707  Cd Length: 76  Bit Score: 65.70  E-value: 7.42e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2495636605 14 LRTLSFILAVLLTLFFFLNINHFSTNLRSEPVLLVLIIIWGTGVLWIHGIGFEIRNTFWKALFLPLIGYIGFILAI 89
Cdd:pfam09600  1 LRALSLLLALALAGCVLWDPNRFAAATGGLDHWLAPLLIWAVCAGFIHGVGFRPRRWIWRLLFSPLLAWLILIYGL 76
PRK10588 PRK10588
hypothetical protein; Provisional
 1-83 1.05e-09

hypothetical protein; Provisional


Pssm-ID: 236721  Cd Length: 97  Bit Score: 50.51  E-value: 1.05e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495636605  1 MINSIYQIFNKGSLRTLSFILAVLLTLFFFLNINHFSTNLRSEPVLLVLIIIWGTGVLWIHGIGFEIRNTFWKALFLPLI 80
Cdd:PRK10588   4 IIDKLYAVMDKRPLRALSLVMALLLAGCMFWDPSRFAAKTSSLEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLP 83


                 ...
gi 2495636605 81 GYI 83
Cdd:PRK10588  84 ADI 86
 
Name Accession Description Interval E-value
cyd_oper_ybgE TIGR02112
cyd operon protein YbgE; This model describes a small protein of unknown function, about 100 ...
 2-93 2.18e-27

cyd operon protein YbgE; This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria. [Energy metabolism, Electron transport]


Pssm-ID: 131167  Cd Length: 93  Bit Score: 95.50  E-value: 2.18e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495636605  2 INSIYQIFNKGSLRTLSFILAVLLTLFFFLNINHFSTNLRSEPVLLVLIIIWGTGVLWIHGIGFEIRNTFWKALFLPLIG 81
Cdd:TIGR02112  1 IASLYELMDKGLLRALSFILAFLLAGCVFWDPNRFAAAIGGFNAVLALLMIWAVCILWIHGVGFRPRSTLWQLLFSPILG 80

                         90
                 ....*....|..
gi 2495636605 82 YIGFILAIVVSW 93
Cdd:TIGR02112 81 YIILIYLLIVFF 92
YbgE COG3790
Predicted membrane protein, encoded in cydAB operon [Function unknown];
1-94 3.43e-25

Predicted membrane protein, encoded in cydAB operon [Function unknown];


Pssm-ID: 443004  Cd Length: 98  Bit Score: 89.95  E-value: 3.43e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495636605  1 MINSIYQIFNKGSLRTLSFILAVLLTLFFFLNINHFSTNLRSEPVLLVLIIIWGTGVLWIHGIGFEIRNTFWKALFLPLI 80
Cdd:COG3790    4 MIDSLYQLTDKGPLRALSLILALALAGCVLWDPSRFAARTGGLSHWLGLLLIWAVCAGFIHGVGFRPRRWLWRLLFSPLL 83

                         90
                 ....*....|....
gi 2495636605 81 GYIGFILAIVVSWV 94
Cdd:COG3790   84 AYLILIAGLYYFFL 97
Cyd_oper_YbgE pfam09600
Cyd operon protein YbgE (Cyd_oper_YbgE); This entry describes a small protein of unknown ...
 14-89 7.42e-16

Cyd operon protein YbgE (Cyd_oper_YbgE); This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.


Pssm-ID: 430707  Cd Length: 76  Bit Score: 65.70  E-value: 7.42e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2495636605 14 LRTLSFILAVLLTLFFFLNINHFSTNLRSEPVLLVLIIIWGTGVLWIHGIGFEIRNTFWKALFLPLIGYIGFILAI 89
Cdd:pfam09600  1 LRALSLLLALALAGCVLWDPNRFAAATGGLDHWLAPLLIWAVCAGFIHGVGFRPRRWIWRLLFSPLLAWLILIYGL 76
PRK10588 PRK10588
hypothetical protein; Provisional
 1-83 1.05e-09

hypothetical protein; Provisional


Pssm-ID: 236721  Cd Length: 97  Bit Score: 50.51  E-value: 1.05e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495636605  1 MINSIYQIFNKGSLRTLSFILAVLLTLFFFLNINHFSTNLRSEPVLLVLIIIWGTGVLWIHGIGFEIRNTFWKALFLPLI 80
Cdd:PRK10588   4 IIDKLYAVMDKRPLRALSLVMALLLAGCMFWDPSRFAAKTSSLEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLP 83


                 ...
gi 2495636605 81 GYI 83
Cdd:PRK10588  84 ADI 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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