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Conserved domains on  [gi|2495673001|ref|WP_279924237|]
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YeeE/YedE thiosulfate transporter family protein, partial [Pseudomonas sp. GD03985]

Protein Classification

YeeE/YedE family protein( domain architecture ID 139736)

YeeE/YedE family protein similar to Escherichia coli proteins YeeE and YedE, which are membrane proteins that constitute transport components for sulfur-containing compounds

Gene Ontology:  GO:0016020|GO:0006810
PubMed:  21183667
TCDB:  9.B.102

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Sulf_transp super family cl47871
Sulphur transport; This is an integral membrane protein. It is predicted to have a function in ...
 57-214 5.81e-21

Sulphur transport; This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.


The actual alignment was detected with superfamily member pfam04143:

Pssm-ID: 461192 [Multi-domain]  Cd Length: 310  Bit Score: 88.42  E-value: 5.81e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495673001  57 RSRFCFFCVTRDFLEQRRPDGLLGVLAALAVGSLGYHAVFGAFLPDPLGGRLPPdahvgplsWVLALAATLFGIGMAISG 136
Cdd:pfam04143   1 RGRFCFTGAIRDIYLFKDGRGLRALLLAIAVASVGFFLLAAAGLIDLPPSAFPW--------VGTIVGGLLFGVGMVLAG 72

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2495673001 137 SCISAHLYRLGEGAFASLLALVGALIGFALGFMAWNPLYLASIQSAPVVWLPAWQGYGVSLLLQLAALGGLAVWLLRH 214
Cdd:pfam04143  73 GCASGTLYRAGEGNLRSLITLLGFGLGAAATLSGLLAPWLQALLTATVVPVNLYSTLGISPLLLVALLLLIAAWLVAR 150
 
Name Accession Description Interval E-value
Sulf_transp pfam04143
Sulphur transport; This is an integral membrane protein. It is predicted to have a function in ...
 57-214 5.81e-21

Sulphur transport; This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.


Pssm-ID: 461192 [Multi-domain]  Cd Length: 310  Bit Score: 88.42  E-value: 5.81e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495673001  57 RSRFCFFCVTRDFLEQRRPDGLLGVLAALAVGSLGYHAVFGAFLPDPLGGRLPPdahvgplsWVLALAATLFGIGMAISG 136
Cdd:pfam04143   1 RGRFCFTGAIRDIYLFKDGRGLRALLLAIAVASVGFFLLAAAGLIDLPPSAFPW--------VGTIVGGLLFGVGMVLAG 72

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2495673001 137 SCISAHLYRLGEGAFASLLALVGALIGFALGFMAWNPLYLASIQSAPVVWLPAWQGYGVSLLLQLAALGGLAVWLLRH 214
Cdd:pfam04143  73 GCASGTLYRAGEGNLRSLITLLGFGLGAAATLSGLLAPWLQALLTATVVPVNLYSTLGISPLLLVALLLLIAAWLVAR 150
 
Name Accession Description Interval E-value
Sulf_transp pfam04143
Sulphur transport; This is an integral membrane protein. It is predicted to have a function in ...
 57-214 5.81e-21

Sulphur transport; This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.


Pssm-ID: 461192 [Multi-domain]  Cd Length: 310  Bit Score: 88.42  E-value: 5.81e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495673001  57 RSRFCFFCVTRDFLEQRRPDGLLGVLAALAVGSLGYHAVFGAFLPDPLGGRLPPdahvgplsWVLALAATLFGIGMAISG 136
Cdd:pfam04143   1 RGRFCFTGAIRDIYLFKDGRGLRALLLAIAVASVGFFLLAAAGLIDLPPSAFPW--------VGTIVGGLLFGVGMVLAG 72

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2495673001 137 SCISAHLYRLGEGAFASLLALVGALIGFALGFMAWNPLYLASIQSAPVVWLPAWQGYGVSLLLQLAALGGLAVWLLRH 214
Cdd:pfam04143  73 GCASGTLYRAGEGNLRSLITLLGFGLGAAATLSGLLAPWLQALLTATVVPVNLYSTLGISPLLLVALLLLIAAWLVAR 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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