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Conserved domains on  [gi|2498335211|ref|WP_280797158|]
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hypothetical protein [Aurantimicrobium minutum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12678 super family cl36163
transcription termination factor Rho; Provisional
 44-282 9.89e-13

transcription termination factor Rho; Provisional


The actual alignment was detected with superfamily member PRK12678:

Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 71.09  E-value: 9.89e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  44 RDGQSRPQRGERPAAGRSDRPTYGDRASRPDRADRPGYADRGQRGERRPYGDRPDRGERSRYSDRDGAPRGDRSRYGDRE 123
Cdd:PRK12678   58 ARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 124 TPRSDRPYRPSGDRPSYGDRGDRNARPERGGFGRGGSNGAPRGERPGGDRGGKPSFGDRNSRPGRSERpnyGDRPQRGER 203
Cdd:PRK12678  138 RRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR---RDRREQGDR 214

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2498335211 204 SSYGDRGPRPERSDRPSYGDRGPRPERSERPSYGDRPQGGERpayGDRTSRPDRGRERpsygdrpERPRFGDRGGRPDR 282
Cdd:PRK12678  215 REERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGE---GRGGRRGRRFRDR-------DRRGRRGGDGGNER 283
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 331-570 1.20e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.25  E-value: 1.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 331 DELDKvARNELKTLTKENAERVAKHLVMAV--RLMDENPELAHQHvLSAARRAGRIAIVRETLGITAYAIGDFALALREL 408
Cdd:COG2956    22 GQPDK-AIDLLEEALELDPETVEAHLALGNlyRRRGEYDRAIRIH-QKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 409 RTYRRISGSNEQ-IALMVDAERGVGRPDKALELGRSVDRSTlSESTQVALSIAMsgARLDLDQVDLALAELEipqldptK 487
Cdd:COG2956   100 EKLLELDPDDAEaLRLLAEIYEQEGDWEKAIEVLERLLKLG-PENAHAYCELAE--LYLEQGDYDEAIEALE-------K 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 488 AFTYSPALFSAY---AEVLEELGRHQEAAE-WTTCAEVAEKALVA----ADLMDSSDEDEQDIVVFEEVLE----DDALE 555
Cdd:COG2956   170 ALKLDPDCARALlllAELYLEQGDYEEAIAaLERALEQDPDYLPAlprlAELYEKLGDPEEALELLRKALEldpsDDLLL 249

                         250
                  ....*....|....*
gi 2498335211 556 LVSEGLVDDEGIALA 570
Cdd:COG2956   250 ALADLLERKEGLEAA 264
 
Name Accession Description Interval E-value
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 44-282 9.89e-13

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 71.09  E-value: 9.89e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  44 RDGQSRPQRGERPAAGRSDRPTYGDRASRPDRADRPGYADRGQRGERRPYGDRPDRGERSRYSDRDGAPRGDRSRYGDRE 123
Cdd:PRK12678   58 ARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 124 TPRSDRPYRPSGDRPSYGDRGDRNARPERGGFGRGGSNGAPRGERPGGDRGGKPSFGDRNSRPGRSERpnyGDRPQRGER 203
Cdd:PRK12678  138 RRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR---RDRREQGDR 214

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2498335211 204 SSYGDRGPRPERSDRPSYGDRGPRPERSERPSYGDRPQGGERpayGDRTSRPDRGRERpsygdrpERPRFGDRGGRPDR 282
Cdd:PRK12678  215 REERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGE---GRGGRRGRRFRDR-------DRRGRRGGDGGNER 283
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 84-245 5.27e-06

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 49.13  E-value: 5.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  84 RGQRGERRPYGDRPDRGERSRYSDRdgAPRGDRSRYGDRETPRSDRPYRPSGDRPSYGDRGDRNARPERGGFGRGGSNGA 163
Cdd:NF038329  128 AGPAGEQGPRGDRGETGPAGPAGPP--GPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGE 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 164 PRGERPGGDRGGKPSFGDRNSrPGRSERPNYGDRPQRGERSSYGDRGPRPERsdrpsyGDRGPRPERSERPSYGDRPQGG 243
Cdd:NF038329  206 QGPAGPAGPDGEAGPAGEDGP-AGPAGDGQQGPDGDPGPTGEDGPQGPDGPA------GKDGPRGDRGEAGPDGPDGKDG 278


                  ..
gi 2498335211 244 ER 245
Cdd:NF038329  279 ER 280
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 85-258 6.00e-06

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 49.13  E-value: 6.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  85 GQRGERRPYGDRPDRGERsrysdrdgAPRGDRSRYGDRETPRSDRPYRPSGDRPSYGDRGDRNARPERGGFGRGGSNGAP 164
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQ--------GPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPA 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 165 RGERPGGDRGGKPSFGDRNSRPGRSERPNYGDRPQRGERSSYGD--RGPRPERSDRPSYGDRGPRPERSERPSYGDRPQG 242
Cdd:NF038329  189 GEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDgqQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEA 268

                         170
                  ....*....|....*.
gi 2498335211 243 GERPAYGDRTSRPDRG 258
Cdd:NF038329  269 GPDGPDGKDGERGPVG 284
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 51-227 7.79e-05

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 45.67  E-value: 7.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  51 QRGER----PAAGRSDRPTYGDRASRPDRADRPGYADRGQRGERRPYGDRPDRGERsrysdrdgAPRGDRSRYGDRETPR 126
Cdd:NF038329  118 EKGEPgpagPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQ--------GPAGKDGEAGAKGPAG 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 127 SDRPYRPSGDRPSYGDRGdRNARPERGGFGRGGSNGAPRGERPGGDRGGKPSFGDRNSRPGRSERPNYGDRPQRGERSSY 206
Cdd:NF038329  190 EKGPQGPRGETGPAGEQG-PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEA 268

                         170       180
                  ....*....|....*....|.
gi 2498335211 207 GDRGPRPERsdrpsyGDRGPR 227
Cdd:NF038329  269 GPDGPDGKD------GERGPV 283
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 331-570 1.20e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.25  E-value: 1.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 331 DELDKvARNELKTLTKENAERVAKHLVMAV--RLMDENPELAHQHvLSAARRAGRIAIVRETLGITAYAIGDFALALREL 408
Cdd:COG2956    22 GQPDK-AIDLLEEALELDPETVEAHLALGNlyRRRGEYDRAIRIH-QKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 409 RTYRRISGSNEQ-IALMVDAERGVGRPDKALELGRSVDRSTlSESTQVALSIAMsgARLDLDQVDLALAELEipqldptK 487
Cdd:COG2956   100 EKLLELDPDDAEaLRLLAEIYEQEGDWEKAIEVLERLLKLG-PENAHAYCELAE--LYLEQGDYDEAIEALE-------K 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 488 AFTYSPALFSAY---AEVLEELGRHQEAAE-WTTCAEVAEKALVA----ADLMDSSDEDEQDIVVFEEVLE----DDALE 555
Cdd:COG2956   170 ALKLDPDCARALlllAELYLEQGDYEEAIAaLERALEQDPDYLPAlprlAELYEKLGDPEEALELLRKALEldpsDDLLL 249

                         250
                  ....*....|....*
gi 2498335211 556 LVSEGLVDDEGIALA 570
Cdd:COG2956   250 ALADLLERKEGLEAA 264
SF-CC1 TIGR01622
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...
 62-168 2.07e-03

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.


Pssm-ID: 273721 [Multi-domain]  Cd Length: 494  Bit Score: 41.06  E-value: 2.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  62 DRPTYGDRASRPDRaDRPGYADRGQRGERRPYGDRPDRGERSRYSDRDGAPRGDRSRygDRETPRSDRPYRPSGDRPSYG 141
Cdd:TIGR01622  12 DSSSAGDRDRRRDK-GRERSRDRSRDRERSRSRRRDRHRDRDYYRGRERRSRSRRPN--RRYRPREKRRRRGDSYRRRRD 88

                          90       100
                  ....*....|....*....|....*..
gi 2498335211 142 DRGDRNARPERGGFGRGGSNGAPRGER 168
Cdd:TIGR01622  89 DRRSRREKPRARDGTPEPLTEDERDRR 115
 
Name Accession Description Interval E-value
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 44-282 9.89e-13

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 71.09  E-value: 9.89e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  44 RDGQSRPQRGERPAAGRSDRPTYGDRASRPDRADRPGYADRGQRGERRPYGDRPDRGERSRYSDRDGAPRGDRSRYGDRE 123
Cdd:PRK12678   58 ARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 124 TPRSDRPYRPSGDRPSYGDRGDRNARPERGGFGRGGSNGAPRGERPGGDRGGKPSFGDRNSRPGRSERpnyGDRPQRGER 203
Cdd:PRK12678  138 RRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR---RDRREQGDR 214

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2498335211 204 SSYGDRGPRPERSDRPSYGDRGPRPERSERPSYGDRPQGGERpayGDRTSRPDRGRERpsygdrpERPRFGDRGGRPDR 282
Cdd:PRK12678  215 REERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGE---GRGGRRGRRFRDR-------DRRGRRGGDGGNER 283
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 10-238 1.37e-12

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 70.70  E-value: 1.37e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  10 TPGRADRPRRDGQGPRNYRSESSREERPNRYGVPRDGQSRPQRGERPAAGRSDRPTYG---DRASRPDRADRPGYADRGQ 86
Cdd:PRK12678   68 ATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAqarERRERGEAARRGAARKAGE 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  87 RGERRPYGDRPDRGERSRYSDRDGAPRGDRSRYGDRETPRSDRpyRPSGDRPSYGDRGDRNARPERGGFGRGgsngapRG 166
Cdd:PRK12678  148 GGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGER--GRREERGRDGDDRDRRDRREQGDRREE------RG 219

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2498335211 167 ERPGGDRGGKPSFGDRNSRPGRSERPNYGDRPQRGERSSYGDRGPRPERSDRPSYGDRGPRPERSERPSYGD 238
Cdd:PRK12678  220 RRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 12-234 2.94e-12

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 69.55  E-value: 2.94e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  12 GRADRPRRDGQGPRNYRSESSREERPNRYGVPRDGQSRPQRGERPAAGRSDRPTYGDRASRPDRADRPGYADRGQRGERR 91
Cdd:PRK12678   61 GGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRG 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  92 PYGDRPDRGERSRYSDR-DGAPRGDRSRYGDRETPRSDRPYRPSGDRPSYGDRGDRNARPERGGFGRGGSNGAPRGERPG 170
Cdd:PRK12678  141 AARKAGEGGEQPATEARaDAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGR 220

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2498335211 171 GDRGGKPSFGDRNSRPGRSERPNYGDRPQRGERSSYGDRGPRPERSDRPSYGDRGPRPERSERP 234
Cdd:PRK12678  221 RDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNERE 284
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 19-251 3.65e-11

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 66.08  E-value: 3.65e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  19 RDGQGPRNYRSESSREERPNRYGVPRDGQSRPQRGERPAAGRSDRPTYGDRASRPDRADRPGYADRGQRGERRPYGDRPD 98
Cdd:PRK12678   56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  99 RGERSRysDRDGAPRGDRSRYGDRETPRSDRPYRPSGDRPSYGDRGDRNARPERGGFGRGGSNGAPRGERPGGDRGGKps 178
Cdd:PRK12678  136 AARRGA--ARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQ-- 211

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2498335211 179 fGDRNSRPGRSERPNYGDRPQRGERSSYGDRGPRPERSDRPSYGDRGPRPERSERPSYGDRPQGGERPAYGDR 251
Cdd:PRK12678  212 -GDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNER 283
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 106-293 6.94e-10

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 62.23  E-value: 6.94e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 106 SDRDGAPRGDRSRYGDRETPRSDRPYRPSGDRPSYGDRGDRNARPERGGFGRGGSNGAPRGERPGGDRGGKPSFGDRNSR 185
Cdd:PRK12678   69 TPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEG 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 186 PGRSERPNYGDRPQRGERSSYGDRGPRPERSDRPSYGDRGPRPERSERPSYGDRpqggerpayGDRTSRPDRGRERPSYG 265
Cdd:PRK12678  149 GEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDD---------RDRRDRREQGDRREERG 219

                         170       180
                  ....*....|....*....|....*...
gi 2498335211 266 DRPERPRFGDRGGRPDRAGAPRGSRDDR 293
Cdd:PRK12678  220 RRDGGDRRGRRRRRDRRDARGDDNREDR 247
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 84-293 9.38e-09

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 58.38  E-value: 9.38e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  84 RGQRGERRPYGDRPDRGERSRYSDRDGAPRGDRSRYGDRETPRSDRPYRPSGDRPSYGDRGDRNARPERGGFGRGGSNGA 163
Cdd:PRK12678   59 RGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAAR 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 164 PRGERPGGDRGGKPSFGDRNSRPGRSERPNYGDRPQRGERssyGDRGPRPERSDRPSYGDRGPRPERSERPSYGDRPQGG 243
Cdd:PRK12678  139 RGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDR---EDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRR 215

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2498335211 244 ERPAYGDRTSRPDRGRERPSYGDRPERPRFGDRGGRPDRAGAPRGSRDDR 293
Cdd:PRK12678  216 EERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRR 265
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 145-368 4.36e-06

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 50.07  E-value: 4.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 145 DRNARPERGGFGRGGSNGAPrGERPGGDRGGKPSFGdrnsrpgrSERPNYGDRPQRGERSSYGDRgPRPERSDRPSygdr 224
Cdd:PTZ00449  505 DKHDEPPEGPEASGLPPKAP-GDKEGEEGEHEDSKE--------SDEPKEGGKPGETKEGEVGKK-PGPAKEHKPS---- 570

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 225 gPRPERSERPSYGDRPQGGERPAYGDRTSRPdRGRERPSYGDRPERPRFGDRGGRPDRAGAPRGSRD----DRTSCWEEP 300
Cdd:PTZ00449  571 -KIPTLSKKPEFPKDPKHPKDPEEPKKPKRP-RSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRppppQRPSSPERP 648

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2498335211 301 ELTEEQRMARELRMVRPHHdDPWIDDDVTGDELDKVARnelktlTKENAERVAKHLVMAVRLMDENPE 368
Cdd:PTZ00449  649 EGPKIIKSPKPPKSPKPPF-DPKFKEKFYDDYLDAAAK------SKETKTTVVLDESFESILKETLPE 709
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 2-138 5.25e-06

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 49.52  E-value: 5.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211   2 SEENEDFGTPGRADRPRRDGQGPRNYRSESSREERPNRYGVPRDGQSRPQRGERPAAGRSDRPTY----GDRASRPDRAD 77
Cdd:PRK12678  143 RKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDrreqGDRREERGRRD 222

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2498335211  78 RPGYADRGQRGERRPY-GDRPDRGERSRYSDRDGAPRGDRSRYGDRETPRSDRPYRPSGDRP 138
Cdd:PRK12678  223 GGDRRGRRRRRDRRDArGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNERE 284
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 84-245 5.27e-06

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 49.13  E-value: 5.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  84 RGQRGERRPYGDRPDRGERSRYSDRdgAPRGDRSRYGDRETPRSDRPYRPSGDRPSYGDRGDRNARPERGGFGRGGSNGA 163
Cdd:NF038329  128 AGPAGEQGPRGDRGETGPAGPAGPP--GPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGE 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 164 PRGERPGGDRGGKPSFGDRNSrPGRSERPNYGDRPQRGERSSYGDRGPRPERsdrpsyGDRGPRPERSERPSYGDRPQGG 243
Cdd:NF038329  206 QGPAGPAGPDGEAGPAGEDGP-AGPAGDGQQGPDGDPGPTGEDGPQGPDGPA------GKDGPRGDRGEAGPDGPDGKDG 278


                  ..
gi 2498335211 244 ER 245
Cdd:NF038329  279 ER 280
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 85-258 6.00e-06

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 49.13  E-value: 6.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  85 GQRGERRPYGDRPDRGERsrysdrdgAPRGDRSRYGDRETPRSDRPYRPSGDRPSYGDRGDRNARPERGGFGRGGSNGAP 164
Cdd:NF038329  117 GEKGEPGPAGPAGPAGEQ--------GPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPA 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 165 RGERPGGDRGGKPSFGDRNSRPGRSERPNYGDRPQRGERSSYGD--RGPRPERSDRPSYGDRGPRPERSERPSYGDRPQG 242
Cdd:NF038329  189 GEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDgqQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEA 268

                         170
                  ....*....|....*.
gi 2498335211 243 GERPAYGDRTSRPDRG 258
Cdd:NF038329  269 GPDGPDGKDGERGPVG 284
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 10-290 1.91e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.86  E-value: 1.91e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211   10 TPGRADRPRRDGQGPRNYRSESSREERPnryGVPRDGQSRPQRGERPAAGRSDRPTYGDRA---SRPDRADRPGYADRGQ 86
Cdd:PHA03307   116 PPPPTPPPASPPPSPAPDLSEMLRPVGS---PGPPPAASPPAAGASPAAVASDAASSRQAAlplSSPEETARAPSSPPAE 192

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211   87 RGERRPYGDRPDRGERSRYSDRDGAPRGDRSRYGDRETPRSDRPYRPSGDRPSYGDRGDRNARPERGGFGRGGSNGAPRG 166
Cdd:PHA03307   193 PPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEA 272

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  167 ERPGGDRGGKPSfgdrnsrpgrsERPNYGDRPQRGERSSYGDRGPRPERSDRPSYGDRGPRPERSERP---SYGDRPQGG 243
Cdd:PHA03307   273 SGWNGPSSRPGP-----------ASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTsssSESSRGAAV 341

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 2498335211  244 ERPAYGDRTSRPDRGRERPSYGDRPERPRfGDRGGRPDRAGAPRGSR 290
Cdd:PHA03307   342 SPGPSPSRSPSPSRPPPPADPSSPRKRPR-PSRAPSSPAASAGRPTR 387
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 11-281 2.19e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.86  E-value: 2.19e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211   11 PGRADRPRRDGQGPRNYRSESSREERPNRYGVPRDGQSRPQRGERPAAGRSDRPTYGDRASRPDRADRPGYADRGQRGER 90
Cdd:PHA03307   194 PPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEAS 273

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211   91 RPYGDRPDRGERSrysdrdgAPRGDRSRYGDRETPRSDRPYRPSGDRPSYGDRGDRNARPERGGFGRGGSNGAPRGERPG 170
Cdd:PHA03307   274 GWNGPSSRPGPAS-------SSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPS 346

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  171 GDRGGKPSfgdrnsrpgrserpnygdrpqrgeRSSYGDRGPRPERSDRPSYGDRGPRPERSERPSYGDRPQGGERPAYGD 250
Cdd:PHA03307   347 PSRSPSPS------------------------RPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRD 402

                          250       260       270
                   ....*....|....*....|....*....|.
gi 2498335211  251 RTSRPDRGRERPSYGDRPERPRFGDRGGRPD 281
Cdd:PHA03307   403 ATGRFPAGRPRPSPLDAGAASGAFYARYPLL 433
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 106-276 7.09e-05

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 46.22  E-value: 7.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 106 SDR-DGAPRGDrsryGDRETPrsdrPYRPSGDRPSYGDRGD-RNARPERGGFGRGGSNGAPRGERPGGDRGGKPS----F 179
Cdd:PTZ00449  504 SDKhDEPPEGP----EASGLP----PKAPGDKEGEEGEHEDsKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSkiptL 575

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 180 GDRNSRPGRSERPNYGDRPQRGERSSYGDRGPRPERSDRPSYGDRGPRPERSERPSYGDRPQGGERPAYGDRTSRPD--R 257
Cdd:PTZ00449  576 SKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKiiK 655

                         170
                  ....*....|....*....
gi 2498335211 258 GRERPSYGDRPERPRFGDR 276
Cdd:PTZ00449  656 SPKPPKSPKPPFDPKFKEK 674
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 51-227 7.79e-05

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 45.67  E-value: 7.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  51 QRGER----PAAGRSDRPTYGDRASRPDRADRPGYADRGQRGERRPYGDRPDRGERsrysdrdgAPRGDRSRYGDRETPR 126
Cdd:NF038329  118 EKGEPgpagPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQ--------GPAGKDGEAGAKGPAG 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 127 SDRPYRPSGDRPSYGDRGdRNARPERGGFGRGGSNGAPRGERPGGDRGGKPSFGDRNSRPGRSERPNYGDRPQRGERSSY 206
Cdd:NF038329  190 EKGPQGPRGETGPAGEQG-PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEA 268

                         170       180
                  ....*....|....*....|.
gi 2498335211 207 GDRGPRPERsdrpsyGDRGPR 227
Cdd:NF038329  269 GPDGPDGKD------GERGPV 283
dnaA PRK14086
chromosomal replication initiator protein DnaA;
164-300 3.98e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 43.28  E-value: 3.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 164 PRGERPGGDRGGKPSFGDRNSRPGRSE-----RPNYGDRPQRGERSSY----GDRGPRPERSDRPSYGDRGPRPERSERP 234
Cdd:PRK14086  111 PRPGRRPYEGYGGPRADDRPPGLPRQDqlptaRPAYPAYQQRPEPGAWpraaDDYGWQQQRLGFPPRAPYASPASYAPEQ 190

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 235 SYGDRPQGGERPAYGDRtsRPDRGRERPSY----GDRPERPRFGDRGGRPDRAGAPRGSRDDRTSCWEEP 300
Cdd:PRK14086  191 ERDREPYDAGRPEYDQR--RRDYDHPRPDWdrprRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRP 258
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 331-570 1.20e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.25  E-value: 1.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 331 DELDKvARNELKTLTKENAERVAKHLVMAV--RLMDENPELAHQHvLSAARRAGRIAIVRETLGITAYAIGDFALALREL 408
Cdd:COG2956    22 GQPDK-AIDLLEEALELDPETVEAHLALGNlyRRRGEYDRAIRIH-QKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 409 RTYRRISGSNEQ-IALMVDAERGVGRPDKALELGRSVDRSTlSESTQVALSIAMsgARLDLDQVDLALAELEipqldptK 487
Cdd:COG2956   100 EKLLELDPDDAEaLRLLAEIYEQEGDWEKAIEVLERLLKLG-PENAHAYCELAE--LYLEQGDYDEAIEALE-------K 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 488 AFTYSPALFSAY---AEVLEELGRHQEAAE-WTTCAEVAEKALVA----ADLMDSSDEDEQDIVVFEEVLE----DDALE 555
Cdd:COG2956   170 ALKLDPDCARALlllAELYLEQGDYEEAIAaLERALEQDPDYLPAlprlAELYEKLGDPEEALELLRKALEldpsDDLLL 249

                         250
                  ....*....|....*
gi 2498335211 556 LVSEGLVDDEGIALA 570
Cdd:COG2956   250 ALADLLERKEGLEAA 264
SF-CC1 TIGR01622
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...
 62-168 2.07e-03

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.


Pssm-ID: 273721 [Multi-domain]  Cd Length: 494  Bit Score: 41.06  E-value: 2.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  62 DRPTYGDRASRPDRaDRPGYADRGQRGERRPYGDRPDRGERSRYSDRDGAPRGDRSRygDRETPRSDRPYRPSGDRPSYG 141
Cdd:TIGR01622  12 DSSSAGDRDRRRDK-GRERSRDRSRDRERSRSRRRDRHRDRDYYRGRERRSRSRRPN--RRYRPREKRRRRGDSYRRRRD 88

                          90       100
                  ....*....|....*....|....*..
gi 2498335211 142 DRGDRNARPERGGFGRGGSNGAPRGER 168
Cdd:TIGR01622  89 DRRSRREKPRARDGTPEPLTEDERDRR 115
dnaA PRK14086
chromosomal replication initiator protein DnaA;
10-150 3.50e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 40.58  E-value: 3.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  10 TPGRADRPRRDGQGPRNYRSESSREERPNRYGVPRDGQ------SRPQRGERPAAG-----RSDRPTYGDRASRPDRADR 78
Cdd:PRK14086  101 HARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQlptarpAYPAYQQRPEPGawpraADDYGWQQQRLGFPPRAPY 180

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2498335211  79 PGYAD--RGQRGERRPYGD-RPDRGERSRYSDRDGaPRGDRSRYGDRETPR----SDRPYRPSGDRPSYGDRGDRNARP 150
Cdd:PRK14086  181 ASPASyaPEQERDREPYDAgRPEYDQRRRDYDHPR-PDWDRPRRDRTDRPEpppgAGHVHRGGPGPPERDDAPVVPIRP 258
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 342-515 6.74e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.12  E-value: 6.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 342 KTLTK--ENAERVAKHLVMAVRLMDE--NPELAHQHVLSAARRAGRIAIVRetlGIT----AYAIGDFALALRELRTYRR 413
Cdd:COG3071    37 KLLSKaaEHSEAPLLAYLLAARAAQAlgDYERRDEYLAQALELAPEAELAV---LLTraelLLDQGQAEQALATLEALRA 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 414 ISGSNEQI-ALMVDAERGVGRPDKALELGRSVDRSTLSESTQV------ALSIAMSGARLDLDQVDLALAELEipqldpt 486
Cdd:COG3071   114 GAPRHPQVlRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAqalerrAYLGLLRQAARDAEALKALWKALP------- 186

                         170       180
                  ....*....|....*....|....*....
gi 2498335211 487 KAFTYSPALFSAYAEVLEELGRHQEAAEW 515
Cdd:COG3071   187 RAERRDPELAAAYARALIALGDHDEAERL 215
SF-CC1 TIGR01622
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...
 18-122 8.44e-03

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.


Pssm-ID: 273721 [Multi-domain]  Cd Length: 494  Bit Score: 39.13  E-value: 8.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211  18 RRDGQGPRNYRSESSREERPNRYGVPRDGQSRPQRGERPAAGRSDRPTYGDRASRPDRADRpgyaDRGQRGERRPYGDRP 97
Cdd:TIGR01622   2 YRDRERERLRDSSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDRHRDRDYYRGRERRSR----SRRPNRRYRPREKRR 77

                          90       100
                  ....*....|....*....|....*
gi 2498335211  98 DRGERSRYSDRDGAPRGDRSRYGDR 122
Cdd:TIGR01622  78 RRGDSYRRRRDDRRSRREKPRARDG 102
dnaA PRK14086
chromosomal replication initiator protein DnaA;
209-340 9.63e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 39.04  E-value: 9.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2498335211 209 RGPRPERSDRPSYGDRGPRPERSERPSYGDRPQGGERPAYGDRTSRPDrgrERPSYGDRPERPRFG-------DRGGRPD 281
Cdd:PRK14086   94 EPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPT---ARPAYPAYQQRPEPGawpraadDYGWQQQ 170

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2498335211 282 RAGAPrgSRDDRTSCWEEPELTEEQRMARELRmvRPHHDDPWIDDDVTGDELDKVARNE 340
Cdd:PRK14086  171 RLGFP--PRAPYASPASYAPEQERDREPYDAG--RPEYDQRRRDYDHPRPDWDRPRRDR 225
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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