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Conserved domains on  [gi|2500085142|ref|WP_281166709|]
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LuxR C-terminal-related transcriptional regulator [Deinococcus apachensis]

Protein Classification

helix-turn-helix transcriptional regulator( domain architecture ID 18629437)

helix-turn-helix (HTH) transcriptional regulator containing a LuxR family HTH DNA-binding domain; may act as a transcription activator/repressor, or have a dual role for different sites

Gene Ontology:  GO:0006355|GO:0003677|GO:0003700
PubMed:  15808743|19076237|10473770|8831795

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GerE COG5905
Spore transcriptional regulator GerE (stand-alone HTH domain) [Cell cycle control, cell ...
 151-216 3.40e-19

Spore transcriptional regulator GerE (stand-alone HTH domain) [Cell cycle control, cell division, chromosome partitioning, Transcription];


:

Pssm-ID: 444607 [Multi-domain]  Cd Length: 76  Bit Score: 78.08  E-value: 3.40e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2500085142 151 RATAGLTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALAVREGLV 216
Cdd:COG5905     8 SHPSLLTKREREVLELLAEGLTNKEIARQLFISEKTVKNHVSNILRKLGVRNRVQAVVWALRLGLL 73
CsgD COG2771
DNA-binding transcriptional regulator, CsgD family [Transcription];
36-216 5.12e-09

DNA-binding transcriptional regulator, CsgD family [Transcription];


:

Pssm-ID: 442052 [Multi-domain]  Cd Length: 188  Bit Score: 53.99  E-value: 5.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500085142  36 LPAAFPLLGQALSRAVRLGHRRNVAEALEDFAALAVASGEAARAVRWVSAARAVREGVGALPAPLDGRQIERTLRRARAK 115
Cdd:COG2771     8 LLLLALLLLLLALLALLLLLLLAALLLLLALLLLAALLLLAAAAAALAAALAAALLLGLLLLLLIALLLLLLLLLALLLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500085142 116 LSRAAYAREGQEGALLGLGAAVAEALQWRPIPSPIRATAGLTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLF 195
Cdd:COG2771    88 LALLALLAALLARLAALLLALALAALLLAALARLLARAPGLTPREREVLRLLAEGLTLKEIARILGISERTVRTHLKRIY 167

                         170       180
                  ....*....|....*....|.
gi 2500085142 196 GKLGVNSRAAATALAVREGLV 216
Cdd:COG2771   168 RKLGVSSRAELVALALRLGLI 188
 
Name Accession Description Interval E-value
GerE COG5905
Spore transcriptional regulator GerE (stand-alone HTH domain) [Cell cycle control, cell ...
 151-216 3.40e-19

Spore transcriptional regulator GerE (stand-alone HTH domain) [Cell cycle control, cell division, chromosome partitioning, Transcription];


Pssm-ID: 444607 [Multi-domain]  Cd Length: 76  Bit Score: 78.08  E-value: 3.40e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2500085142 151 RATAGLTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALAVREGLV 216
Cdd:COG5905     8 SHPSLLTKREREVLELLAEGLTNKEIARQLFISEKTVKNHVSNILRKLGVRNRVQAVVWALRLGLL 73
GerE pfam00196
Bacterial regulatory proteins, luxR family;
156-210 7.94e-16

Bacterial regulatory proteins, luxR family;


Pssm-ID: 425517 [Multi-domain]  Cd Length: 57  Bit Score: 68.77  E-value: 7.94e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2500085142 156 LTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALA 210
Cdd:pfam00196   3 LSPREREVLRWLAAGKSNKEIADELGISEKTVKVHRSNIMRKLNVHSRVELVRMA 57
LuxR_C_like cd06170
C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix ...
 156-212 1.23e-15

C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.


Pssm-ID: 99777 [Multi-domain]  Cd Length: 57  Bit Score: 68.33  E-value: 1.23e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2500085142 156 LTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALAVR 212
Cdd:cd06170     1 LTPREREVLRLLAEGKTNKEIADILGISEKTVKTHLRNIMRKLGVKSRTQLVAYAIR 57
HTH_LUXR smart00421
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
 154-210 6.10e-15

helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon


Pssm-ID: 197715 [Multi-domain]  Cd Length: 58  Bit Score: 66.40  E-value: 6.10e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2500085142  154 AGLTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALA 210
Cdd:smart00421   2 ASLTPREREVLRLLAEGLTNKEIAERLGISEKTVKTHLSNIMRKLGVRSRTQAVRLA 58
PRK10651 PRK10651
transcriptional regulator NarL; Provisional
 145-213 8.49e-11

transcriptional regulator NarL; Provisional


Pssm-ID: 182619 [Multi-domain]  Cd Length: 216  Bit Score: 59.27  E-value: 8.49e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2500085142 145 PIPSPIRATAGLTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALAVRE 213
Cdd:PRK10651  145 NRATTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213
CsgD COG2771
DNA-binding transcriptional regulator, CsgD family [Transcription];
36-216 5.12e-09

DNA-binding transcriptional regulator, CsgD family [Transcription];


Pssm-ID: 442052 [Multi-domain]  Cd Length: 188  Bit Score: 53.99  E-value: 5.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500085142  36 LPAAFPLLGQALSRAVRLGHRRNVAEALEDFAALAVASGEAARAVRWVSAARAVREGVGALPAPLDGRQIERTLRRARAK 115
Cdd:COG2771     8 LLLLALLLLLLALLALLLLLLLAALLLLLALLLLAALLLLAAAAAALAAALAAALLLGLLLLLLIALLLLLLLLLALLLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500085142 116 LSRAAYAREGQEGALLGLGAAVAEALQWRPIPSPIRATAGLTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLF 195
Cdd:COG2771    88 LALLALLAALLARLAALLLALALAALLLAALARLLARAPGLTPREREVLRLLAEGLTLKEIARILGISERTVRTHLKRIY 167

                         170       180
                  ....*....|....*....|.
gi 2500085142 196 GKLGVNSRAAATALAVREGLV 216
Cdd:COG2771   168 RKLGVSSRAELVALALRLGLI 188
 
Name Accession Description Interval E-value
GerE COG5905
Spore transcriptional regulator GerE (stand-alone HTH domain) [Cell cycle control, cell ...
 151-216 3.40e-19

Spore transcriptional regulator GerE (stand-alone HTH domain) [Cell cycle control, cell division, chromosome partitioning, Transcription];


Pssm-ID: 444607 [Multi-domain]  Cd Length: 76  Bit Score: 78.08  E-value: 3.40e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2500085142 151 RATAGLTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALAVREGLV 216
Cdd:COG5905     8 SHPSLLTKREREVLELLAEGLTNKEIARQLFISEKTVKNHVSNILRKLGVRNRVQAVVWALRLGLL 73
CitB COG2197
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ...
 156-216 1.42e-18

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 441799 [Multi-domain]  Cd Length: 131  Bit Score: 78.01  E-value: 1.42e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2500085142 156 LTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALAVREGLV 216
Cdd:COG2197    70 LTPREREVLRLLAEGLSNKEIAERLGISERTVKTHVSNILRKLGVRNRTELVLLALRLGLL 130
GerE pfam00196
Bacterial regulatory proteins, luxR family;
156-210 7.94e-16

Bacterial regulatory proteins, luxR family;


Pssm-ID: 425517 [Multi-domain]  Cd Length: 57  Bit Score: 68.77  E-value: 7.94e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2500085142 156 LTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALA 210
Cdd:pfam00196   3 LSPREREVLRWLAAGKSNKEIADELGISEKTVKVHRSNIMRKLNVHSRVELVRMA 57
LuxR_C_like cd06170
C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix ...
 156-212 1.23e-15

C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.


Pssm-ID: 99777 [Multi-domain]  Cd Length: 57  Bit Score: 68.33  E-value: 1.23e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2500085142 156 LTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALAVR 212
Cdd:cd06170     1 LTPREREVLRLLAEGKTNKEIADILGISEKTVKTHLRNIMRKLGVKSRTQLVAYAIR 57
HTH_LUXR smart00421
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
 154-210 6.10e-15

helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon


Pssm-ID: 197715 [Multi-domain]  Cd Length: 58  Bit Score: 66.40  E-value: 6.10e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2500085142  154 AGLTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALA 210
Cdd:smart00421   2 ASLTPREREVLRLLAEGLTNKEIAERLGISEKTVKTHLSNIMRKLGVRSRTQAVRLA 58
FixJ COG4566
DNA-binding response regulator, FixJ family, consists of REC and HTH domains [Signal ...
 133-214 1.10e-11

DNA-binding response regulator, FixJ family, consists of REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 443623 [Multi-domain]  Cd Length: 196  Bit Score: 61.27  E-value: 1.10e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500085142 133 LGAAVAEALQWRPIPSPIRAT----AGLTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATA 208
Cdd:COG4566   111 VRRALARDRARRAERARRAELrarlASLTPREREVLDLVVAGLSNKQIARELGISPRTVEVHRANVMEKLGARSLAELVR 190


                  ....*.
gi 2500085142 209 LAVREG 214
Cdd:COG4566   191 LALALG 196
PRK10651 PRK10651
transcriptional regulator NarL; Provisional
 145-213 8.49e-11

transcriptional regulator NarL; Provisional


Pssm-ID: 182619 [Multi-domain]  Cd Length: 216  Bit Score: 59.27  E-value: 8.49e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2500085142 145 PIPSPIRATAGLTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALAVRE 213
Cdd:PRK10651  145 NRATTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213
PRK10100 PRK10100
transcriptional regulator CsgD;
153-210 1.26e-09

transcriptional regulator CsgD;


Pssm-ID: 182241 [Multi-domain]  Cd Length: 216  Bit Score: 56.03  E-value: 1.26e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2500085142 153 TAGLTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALA 210
Cdd:PRK10100  153 SALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210
CsgD COG2771
DNA-binding transcriptional regulator, CsgD family [Transcription];
36-216 5.12e-09

DNA-binding transcriptional regulator, CsgD family [Transcription];


Pssm-ID: 442052 [Multi-domain]  Cd Length: 188  Bit Score: 53.99  E-value: 5.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500085142  36 LPAAFPLLGQALSRAVRLGHRRNVAEALEDFAALAVASGEAARAVRWVSAARAVREGVGALPAPLDGRQIERTLRRARAK 115
Cdd:COG2771     8 LLLLALLLLLLALLALLLLLLLAALLLLLALLLLAALLLLAAAAAALAAALAAALLLGLLLLLLIALLLLLLLLLALLLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500085142 116 LSRAAYAREGQEGALLGLGAAVAEALQWRPIPSPIRATAGLTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLF 195
Cdd:COG2771    88 LALLALLAALLARLAALLLALALAALLLAALARLLARAPGLTPREREVLRLLAEGLTLKEIARILGISERTVRTHLKRIY 167

                         170       180
                  ....*....|....*....|.
gi 2500085142 196 GKLGVNSRAAATALAVREGLV 216
Cdd:COG2771   168 RKLGVSSRAELVALALRLGLI 188
PRK15369 PRK15369
two component system response regulator;
156-215 6.75e-09

two component system response regulator;


Pssm-ID: 185267 [Multi-domain]  Cd Length: 211  Bit Score: 53.93  E-value: 6.75e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500085142 156 LTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALAVREGL 215
Cdd:PRK15369  150 LTPRERQILKLITEGYTNRDIAEQLSISIKTVETHRLNMMRKLDVHKVAELLNWARRLGL 209
PRK09935 PRK09935
fimbriae biosynthesis transcriptional regulator FimZ;
156-202 1.09e-08

fimbriae biosynthesis transcriptional regulator FimZ;


Pssm-ID: 182154 [Multi-domain]  Cd Length: 210  Bit Score: 53.34  E-value: 1.09e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2500085142 156 LTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNS 202
Cdd:PRK09935  150 LSNREVTILRYLVSGLSNKEIADQLLLSNKTVSAHKSNIYGKLGLHS 196
PRK10403 PRK10403
nitrate/nitrite response regulator protein NarP;
156-209 1.81e-08

nitrate/nitrite response regulator protein NarP;


Pssm-ID: 182431 [Multi-domain]  Cd Length: 215  Bit Score: 52.55  E-value: 1.81e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2500085142 156 LTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATAL 209
Cdd:PRK10403  154 LTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207
PRK04841 PRK04841
HTH-type transcriptional regulator MalT;
146-210 8.34e-08

HTH-type transcriptional regulator MalT;


Pssm-ID: 235315 [Multi-domain]  Cd Length: 903  Bit Score: 51.87  E-value: 8.34e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2500085142 146 IPSPIRATAgLTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALA 210
Cdd:PRK04841  830 VPELIRTSP-LTQREWQVLGLIYSGYSNEQIAGELDVAATTIKTHIRNLYQKLGIAHRQEAVQHA 893
MalT COG2909
ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT [Transcription];
107-216 5.25e-07

ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT [Transcription];


Pssm-ID: 442153 [Multi-domain]  Cd Length: 184  Bit Score: 48.16  E-value: 5.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500085142 107 RTLRRARAKLSRAAYAREGQEGALLGLGAAVAEALQWRPIPSpiratagltcREQEVLRLMAAGRSNREIARALEVSEKT 186
Cdd:COG2909    84 RLALDPEEALALLERLLALAEAAGRLLLRALALRALGDREEA----------LAALRRRLLAEGLSNKEIAERLFISVNT 153

                          90       100       110
                  ....*....|....*....|....*....|
gi 2500085142 187 VARHGENLFGKLGVNSRAAATALAVREGLV 216
Cdd:COG2909   154 VKTHLRNIYRKLGVRSRTEAVARARELGLL 183
PRK11475 PRK11475
DNA-binding transcriptional activator BglJ; Provisional
 160-204 1.20e-04

DNA-binding transcriptional activator BglJ; Provisional


Pssm-ID: 236915 [Multi-domain]  Cd Length: 207  Bit Score: 41.65  E-value: 1.20e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2500085142 160 EQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRA 204
Cdd:PRK11475  139 EREILRFMSRGYSMPQIAEQLERNIKTIRAHKFNVMSKLGVSSDA 183
InsA COG3677
Transposase InsA [Mobilome: prophages, transposons];
161-190 4.02e-04

Transposase InsA [Mobilome: prophages, transposons];


Pssm-ID: 442893 [Multi-domain]  Cd Length: 241  Bit Score: 40.24  E-value: 4.02e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 2500085142 161 QEVLRLMAAGRSNREIARALEVSEKTVARH 190
Cdd:COG3677    66 LQAIRLLLNGISLRQIARVLGVSYKTVWRW 95
PRK10360 PRK10360
transcriptional regulator UhpA;
156-202 7.07e-04

transcriptional regulator UhpA;


Pssm-ID: 182408 [Multi-domain]  Cd Length: 196  Bit Score: 39.19  E-value: 7.07e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2500085142 156 LTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNS 202
Cdd:PRK10360  138 LTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSN 184
fixJ PRK09390
response regulator FixJ; Provisional
 154-214 8.19e-04

response regulator FixJ; Provisional


Pssm-ID: 181815 [Multi-domain]  Cd Length: 202  Bit Score: 39.22  E-value: 8.19e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2500085142 154 AGLTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALAVREG 214
Cdd:PRK09390  140 ASLSERERQVMDGLVAGLSNKVIARDLDISPRTVEVYRANVMTKMQAGSLSELVRMALRAG 200
PRK10840 PRK10840
transcriptional regulator RcsB; Provisional
 156-205 1.59e-03

transcriptional regulator RcsB; Provisional


Pssm-ID: 182771 [Multi-domain]  Cd Length: 216  Bit Score: 38.28  E-value: 1.59e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2500085142 156 LTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAA 205
Cdd:PRK10840  151 LSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIA 200
PRK09483 PRK09483
response regulator; Provisional
 156-215 1.65e-03

response regulator; Provisional


Pssm-ID: 236538 [Multi-domain]  Cd Length: 217  Bit Score: 38.16  E-value: 1.65e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500085142 156 LTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSRAAATALAVREGL 215
Cdd:PRK09483  149 LSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208
PRK10188 PRK10188
transcriptional regulator SdiA;
159-209 1.73e-03

transcriptional regulator SdiA;


Pssm-ID: 182292 [Multi-domain]  Cd Length: 240  Bit Score: 38.23  E-value: 1.73e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2500085142 159 REQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNSR------AAATAL 209
Cdd:PRK10188  183 REKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKtqiacyAAATGL 239
COG4584 COG4584
Transposase [Mobilome: prophages, transposons];
161-190 5.02e-03

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 443641 [Multi-domain]  Cd Length: 484  Bit Score: 37.51  E-value: 5.02e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 2500085142 161 QEVLRLMAAGRSNREIARALEVSEKTVARH 190
Cdd:COG4584     8 REIRRLLREGLSIREIARELGISRNTVRKY 37
PRK09958 PRK09958
acid-sensing system DNA-binding response regulator EvgA;
156-202 7.83e-03

acid-sensing system DNA-binding response regulator EvgA;


Pssm-ID: 182168 [Multi-domain]  Cd Length: 204  Bit Score: 36.03  E-value: 7.83e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2500085142 156 LTCREQEVLRLMAAGRSNREIARALEVSEKTVARHGENLFGKLGVNS 202
Cdd:PRK09958  144 LSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKS 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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