|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
4-244 |
3.91e-86 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 256.66 E-value: 3.91e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 4 ITSIQNAKIKNFNKLKKKRERDKQSLAIIEGPHLIEAAFQSGIIIKQLFmIEPQRVD--QGLIQHAEE----VYEINQKV 77
Cdd:COG0566 1 MTSPSNPRVKDLRKLRDKKYREEEGLFLAEGRHAVEEALKAGREIEELL-VTEGALDrlAELLALAKAagipVYEVSREV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 78 AESLSGTMTPQGVFAVIEKSEV--------NMKQAQQVLILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVL 149
Cdd:COG0566 80 LDKLSGTETHQGVLAVVRPPEYadledllaEAGEPPLLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 150 RASQGSVFHIPIQVVDNVIDFIAHF---DGPIYGTALEEATVYHQVATRQsHFGLIVGNEGQGVAPELLQHATQNLTIPI 226
Cdd:COG0566 160 RASAGALFHVPVARVTNLADALEELkeaGFWVVGTDLDGEASLYEVDLPG-PVALVLGNEGKGLSRLVLEACDELVRIPM 238
|
250
....*....|....*...
gi 2500163999 227 YGQAESLNVAVAAGILMF 244
Cdd:COG0566 239 AGGVESLNVAVAAAILLY 256
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
107-246 |
1.91e-66 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 202.27 E-value: 1.91e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 107 VLILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVLRASQGSVFHIPIQVVDNVIDFIAHF---DGPIYGTAL 183
Cdd:cd18095 2 VLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDDLEELLEELkeaGYKVVAADL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2500163999 184 EEATVYHQVATRQShFGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMFYL 246
Cdd:cd18095 82 DGGSSLYDLDLPKP-VALVLGNEGNGLSDELLELCDKRVTIPMSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
107-244 |
1.14e-46 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 151.91 E-value: 1.14e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 107 VLILDRIQDPGNLGTLIRTADAAGLDLVILTK-GTADVYQDKVLRASQGSVFHIPIQVVDNVIDFIAHFDG---PIYGTA 182
Cdd:pfam00588 3 VVVLDNIQDPGNLGAIIRTAAAFGADGLILVEpRSADPYNPKAIRASAGALFHLPLVVVDNLEEALKDLKEagyAVVATS 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2500163999 183 LEeATVYHQVaTRQSHFGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMF 244
Cdd:pfam00588 83 LG-GKSLYEI-DFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
29-247 |
9.84e-34 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 121.68 E-value: 9.84e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 29 LAIIEGPHLIEAAFQSGIIIKQLFMIEPQRvDQGLIQHAEE----VYEINQKVAESLSGTMTPQGVFAVI----EKSEVN 100
Cdd:TIGR00186 1 QEYLYGKNAVLEALLNQQRVFILKGLESKR-LKKLIQLAKKqginIQLVDRQKLDQLTKGGNHQGIAAKVkpilYKDLND 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 101 M------KQAQQVLILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVLRASQGSVFHIPIQVVDNVIDFI--- 171
Cdd:TIGR00186 80 LyktaksKKQPFLLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTItkl 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2500163999 172 AHFDGPIYGTALEEATVYHQVATRQShFGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMFYLK 247
Cdd:TIGR00186 160 KESGFWTVGTDLDAQDTLYQVKLTKP-LALVVGNEGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFEIK 234
|
|
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
108-244 |
6.90e-13 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 66.14 E-value: 6.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 108 LILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVLRASQGSVFHIPIQVVDNVIDFIAHFDGP---IYGTALE 184
Cdd:PRK11181 98 LILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLIRVTNLARTMRMLQEKniwIVGTAGE 177
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2500163999 185 -EATVYHqvATRQSHFGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMF 244
Cdd:PRK11181 178 aDHTLYQ--SKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236
|
|
| SpoU_sub_bind |
smart00967 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
32-96 |
4.46e-10 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 214943 [Multi-domain] Cd Length: 70 Bit Score: 54.46 E-value: 4.46e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 32 IEGPHLIEAAFQSGIIIKQLFMIE-PQRVDQGLIQHAEE----VYEINQKVAESLSGTMTPQGVFAVIEK 96
Cdd:smart00967 1 IEGRHAVEEALKSGRRIKELYLTEgRAERLKELLKLAKErgikVIEVSKKELDKLSGTANHQGVVAVVKP 70
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
4-244 |
3.91e-86 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 256.66 E-value: 3.91e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 4 ITSIQNAKIKNFNKLKKKRERDKQSLAIIEGPHLIEAAFQSGIIIKQLFmIEPQRVD--QGLIQHAEE----VYEINQKV 77
Cdd:COG0566 1 MTSPSNPRVKDLRKLRDKKYREEEGLFLAEGRHAVEEALKAGREIEELL-VTEGALDrlAELLALAKAagipVYEVSREV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 78 AESLSGTMTPQGVFAVIEKSEV--------NMKQAQQVLILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVL 149
Cdd:COG0566 80 LDKLSGTETHQGVLAVVRPPEYadledllaEAGEPPLLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 150 RASQGSVFHIPIQVVDNVIDFIAHF---DGPIYGTALEEATVYHQVATRQsHFGLIVGNEGQGVAPELLQHATQNLTIPI 226
Cdd:COG0566 160 RASAGALFHVPVARVTNLADALEELkeaGFWVVGTDLDGEASLYEVDLPG-PVALVLGNEGKGLSRLVLEACDELVRIPM 238
|
250
....*....|....*...
gi 2500163999 227 YGQAESLNVAVAAGILMF 244
Cdd:COG0566 239 AGGVESLNVAVAAAILLY 256
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
107-246 |
1.91e-66 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 202.27 E-value: 1.91e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 107 VLILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVLRASQGSVFHIPIQVVDNVIDFIAHF---DGPIYGTAL 183
Cdd:cd18095 2 VLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDDLEELLEELkeaGYKVVAADL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2500163999 184 EEATVYHQVATRQShFGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMFYL 246
Cdd:cd18095 82 DGGSSLYDLDLPKP-VALVLGNEGNGLSDELLELCDKRVTIPMSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
107-244 |
1.14e-46 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 151.91 E-value: 1.14e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 107 VLILDRIQDPGNLGTLIRTADAAGLDLVILTK-GTADVYQDKVLRASQGSVFHIPIQVVDNVIDFIAHFDG---PIYGTA 182
Cdd:pfam00588 3 VVVLDNIQDPGNLGAIIRTAAAFGADGLILVEpRSADPYNPKAIRASAGALFHLPLVVVDNLEEALKDLKEagyAVVATS 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2500163999 183 LEeATVYHQVaTRQSHFGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMF 244
Cdd:pfam00588 83 LG-GKSLYEI-DFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| SpoU-like_RNA-MTase |
cd18109 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
107-243 |
2.59e-45 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349982 Cd Length: 141 Bit Score: 148.46 E-value: 2.59e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 107 VLILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVLRASQGSVFHIPIqVVDNVIDFIA--HFDGPIYGTALE 184
Cdd:cd18109 2 TLALDGIQDPGNLGTIIRTADWFGIRQIICSPDTVDPYNPKVVQASMGSIFRVQI-HYTDLPALLAelKKAFPVYGADLD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 185 EATVYHqvATRQSHFGLIVGNEGQGVAPELLQHATQNLTIPIYGQ-AESLNVAVAAGILM 243
Cdd:cd18109 81 GENLYE--FTLPEKGILVMGNEGHGISPEVLKLLTHRLTIPRYGKgAESLNVAVATAILL 138
|
|
| SpoU-like_RlmB |
cd18103 |
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the ... |
107-246 |
3.22e-41 |
|
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349976 Cd Length: 143 Bit Score: 137.90 E-value: 3.22e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 107 VLILDRIQDPGNLGTLIRTADAAGLDLVILTK-GTADVyQDKVLRASQGSVFHIPIQVVDNVIDFIAHF---DGPIYGTA 182
Cdd:cd18103 2 LLILDGITDPHNLGAIIRSAEAFGVDGVIIPKrRSAPL-TPTVAKASAGALEHLPIARVTNLARALEELkeaGFWIYGAD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2500163999 183 LEEATVYHQVATRQShFGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMFYL 246
Cdd:cd18103 81 GEAEKSLYDVDLTGP-LALVLGSEGKGLRRLVLKNCDFLVKIPMAGKVDSLNVSVAAGIILYEI 143
|
|
| SpoU-like_family |
cd18082 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
107-246 |
1.66e-38 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349955 Cd Length: 145 Bit Score: 131.19 E-value: 1.66e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 107 VLILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVLRASQGSVFHIPIQVVDNVIDFIA---HFDGPIYGTAL 183
Cdd:cd18082 1 HLVLDNIRSPGNIGSIFRTADAFGVEKIYLVGPTADIFDPKAKRTSRGTHFSVPYERVDNFEEYLKslkEEGYPLIGLEL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2500163999 184 EEATVYHQvatrQSHFG------LIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMFYL 246
Cdd:cd18082 81 TDGSIPLS----EFKFKkpkkiaLIFGNERSGLSPELLALCDYTVHIPMSGKNSSLNVSVATGIALYEF 145
|
|
| SpoU-like_RNA-MTase |
cd18104 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
107-244 |
3.49e-38 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349977 Cd Length: 146 Bit Score: 130.39 E-value: 3.49e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 107 VLILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVLRASQGSVFHIPIQVVDN--VIDFIAHFDGPIYGTALE 184
Cdd:cd18104 2 ILVLEGLEKPGNLGAILRSADAAGADAVILCDPKTDLFNPNVIRASLGAVFTLPVAEASSeeTLAWLKENKIRILATTPK 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 185 EATVYHQVATRQsHFGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMF 244
Cdd:cd18104 82 AEKLYYEADLRG-PIAIVVGSESEGLSEFWLKAADERVRIPMAGQADSLNVSVAAAILLY 140
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
29-247 |
9.84e-34 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 121.68 E-value: 9.84e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 29 LAIIEGPHLIEAAFQSGIIIKQLFMIEPQRvDQGLIQHAEE----VYEINQKVAESLSGTMTPQGVFAVI----EKSEVN 100
Cdd:TIGR00186 1 QEYLYGKNAVLEALLNQQRVFILKGLESKR-LKKLIQLAKKqginIQLVDRQKLDQLTKGGNHQGIAAKVkpilYKDLND 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 101 M------KQAQQVLILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVLRASQGSVFHIPIQVVDNVIDFI--- 171
Cdd:TIGR00186 80 LyktaksKKQPFLLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTItkl 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2500163999 172 AHFDGPIYGTALEEATVYHQVATRQShFGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMFYLK 247
Cdd:TIGR00186 160 KESGFWTVGTDLDAQDTLYQVKLTKP-LALVVGNEGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFEIK 234
|
|
| SpoU-like_RNMTL1 |
cd18106 |
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) ... |
108-244 |
1.49e-30 |
|
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) catalyzes the methylation of 2'-O-ribose residues G1370 to GmG residue of the mitochondrial 16S rRNA. RNMTL1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349979 Cd Length: 148 Bit Score: 110.80 E-value: 1.49e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 108 LILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVLRASQGSVFHIPIqvVDNV-IDFIAHFDGPiygtaleEA 186
Cdd:cd18106 3 VICDNIRDPGNLGSILRSAAAAGCSKVLLTKGCVDPWEPKVLRAGAGAHFRLPI--YGNLsWDDIPNYLPD-------DS 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2500163999 187 TV-----------YHQVATRQSHFGLIVGNEGQGVAPELLQHATQN----LTIPIYGQAESLNVAVAAGILMF 244
Cdd:cd18106 74 KVfladnnlpvqpYDSIDYCSGPIVLVIGGETHGVSPEAYKLAHSTggsrVHIPLANGVDSLNSAVAASILLF 146
|
|
| SpoU-like_AviRb |
cd18107 |
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes ... |
107-244 |
5.84e-25 |
|
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes methylates the 2'-O atom of U2479 of the 23S ribosomal RNA. AviRb is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349980 Cd Length: 148 Bit Score: 96.30 E-value: 5.84e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 107 VLILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVLRASQGSVFHIPIQVVDNVIDFIAHFDG--------PI 178
Cdd:cd18107 2 VVLFDRPTSPGNLGTIIRSADALGAHGLVVTGHAADVYDPKTIRASTGSLFSLPIVRVPSNRELEDWVEArkargtplQL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2500163999 179 YGTALE-EATVYHQVATRQSHfgLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMF 244
Cdd:cd18107 82 VGTDEHgDHQIADHDFTRPTL--LLIGNETAGLSAAWRELCDETVSIPMAGSASSLNAACAASIFLY 146
|
|
| SpoU-like_TrmH |
cd18092 |
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ... |
107-247 |
1.24e-24 |
|
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349965 Cd Length: 162 Bit Score: 95.61 E-value: 1.24e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 107 VLILDRIQDPGNLGTLIRTADAAGL-DL-VILTKGTADVYQdkvlRASQGSVFHIPIQVVDNVIDFIAHF--DGP-IYGT 181
Cdd:cd18092 18 TVVLENVHDPHNASAVLRTCDAFGVqDVhVIEPKNKFKKNR----GVAMGADKWLDVHRHDSTEECLAALkeQGYrIVAT 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2500163999 182 AL-EEATVYHQVATRQShFGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMFYLK 247
Cdd:cd18092 94 SLsPDAVPLDELDYTRP-TALVFGNEKDGVSEEALAAADERVYIPMYGFVESLNVSVAAAIILYELQ 159
|
|
| SpoU-like_MRM1 |
cd18105 |
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose ... |
107-246 |
1.53e-23 |
|
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose residues G1145 to GmG residue of the mitochondrial 16S rRNA. MRM1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349978 Cd Length: 158 Bit Score: 92.97 E-value: 1.53e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 107 VLILDRIQDPGNLGTLIRTADAAGLDLVIL-TKGTAD---VyqdkVLRASQGSVFHIPIQVVDNVIDFIAH-----FDgp 177
Cdd:cd18105 2 WLLLDEITDPQNLGAILRSAYFLGVDGVVVsSKNSAPlspV----VSKASAGALELMPIYSVDNLASFLKSskengWK-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 178 IYGTALEEATV-------YHQVATRQSHFG--LIVGNEGQGVAPELLQHATQNLTIPIYGQAE-----SLNVAVAAGILM 243
Cdd:cd18105 76 VVGTSAPPSASsdkktipANELSELLLEKPtiLVLGNEGRGLRTNIKNLCDYLVSIPGGRSAEnpgvdSLNVSVAAGILL 155
|
...
gi 2500163999 244 FYL 246
Cdd:cd18105 156 HSL 158
|
|
| SpoU-like |
cd18097 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
107-246 |
3.17e-21 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349970 Cd Length: 144 Bit Score: 86.46 E-value: 3.17e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 107 VLILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVLRASQGSVFHIPIQVVDNVIDFIAHFDGPIYG-TALE- 184
Cdd:cd18097 2 VVVLDNLRSAHNVGSIFRTADAAGVEKIYLCGYTPTPPHPKVAKTALGAEESVPWEHFEDTLEAVRALKARGYTiIALEt 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2500163999 185 --EATVYHQVATRQShFGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMFYL 246
Cdd:cd18097 82 teNSVPLHEARLPRP-LALVLGNEVRGVSPEVLALCDAVVEIPMFGRKNSLNVAVAAAVALYEL 144
|
|
| SpoU-like_NHR |
cd18108 |
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) ... |
107-244 |
1.33e-18 |
|
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) confers resistance to the thiazole antibiotic nosiheptide via catalyzing 2'O-methylation of 23S rRNA at the nucleotide A1067. NHR is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349981 Cd Length: 144 Bit Score: 79.44 E-value: 1.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 107 VLILDRIQDPGNLGTLIRTA---DAAGLdlVILTKGTADVYQDKVLRASQGSVFHIPIQVVD--NVIDFIAHFDGPIYGT 181
Cdd:cd18108 2 VVVLDGVRIVGNIGAIVRTSlalGAAGI--VLVDSDLATVADRRLLRASRGYVFSLPVVLADreEAVAFLRDNDIPLMTL 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2500163999 182 ALEEATVYHQVATRQSHFGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMF 244
Cdd:cd18108 80 DADGDVPVKELGDRPDRLALVFGSEKGGPSGLFEEAAAGTVSIPMSSSTESLNVSVSAGIALH 142
|
|
| SpoU-like |
cd18096 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
107-244 |
2.01e-13 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349969 Cd Length: 140 Bit Score: 65.31 E-value: 2.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 107 VLILDRIQDPGNLGTLIRTADAAGLDLVILtkgtadVYQDKV-LRASQGSVFHIPIQVVDNVIDFIAHF----------- 174
Cdd:cd18096 2 YLVLHNVAKRHNIGTIVRSANAFGVKEVHL------VGRRKFnPFGAMGTDRHVKFRHFDTLAEAKEYLkergirlvgve 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2500163999 175 ----DGPIYGTALEEATVyhqvatrqshfgLIVGNEGQGVAPELLQHATQNLTIPIYGQA-ESLNVAVAAGILMF 244
Cdd:cd18096 76 ivpgAEPIETHPFPGDTA------------FVLGNEGTGLSDEQLAICDGFVYIPQYGSGtASLNVSVAASIVLH 138
|
|
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
108-244 |
6.90e-13 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 66.14 E-value: 6.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 108 LILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVLRASQGSVFHIPIQVVDNVIDFIAHFDGP---IYGTALE 184
Cdd:PRK11181 98 LILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLIRVTNLARTMRMLQEKniwIVGTAGE 177
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2500163999 185 -EATVYHqvATRQSHFGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMF 244
Cdd:PRK11181 178 aDHTLYQ--SKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236
|
|
| SpoU-like_TRM3-like |
cd18091 |
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O) ... |
113-244 |
9.48e-12 |
|
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O)-methyltransferase TRM3 catalyzes the formation of 2'-O-methylguanosine at position 18 (Gm18) in various tRNAs. TRM3 is similar to C-terminal domain of TAR (HIV-1) RNA binding protein 1 (TARBP1), a protein binding to TAR, which functions as a RNA regulatory signal by forming a stable stem-loop structure to which transactivator protein Tat binds. The role of TARBP1 is believed to be to disengage RNA polymerase II from TAR during transcriptional elongation. TRM3 and the C-terminal methyltransferase domain of TARBP1 are members of the SPOUT methyltransferase superfamily.
Pssm-ID: 349964 Cd Length: 145 Bit Score: 61.01 E-value: 9.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 113 IQDPGNLGTLIRTADAAGLDLVILtkGTADVYQDKVLRA-SQGSVFHIPIQVV--DNVIDFIAHFDGPIYG-TALEEATV 188
Cdd:cd18091 8 IDKPPNLGGLCRTCEIFGVSKLVL--PNLAVVEDKQFKAlSVSAEKWLPIEEVkpEDLLPYLKEKKQEGYTiVGLEQTAN 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2500163999 189 yhqvATRQSHFG------LIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMF 244
Cdd:cd18091 86 ----SVSLHDFQfpkktvLVLGNEKEGIPAELLSLLDVCVEIPQLGVIRSLNVHVSGAIAIY 143
|
|
| SpoU-like_TrmL |
cd18094 |
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL ... |
116-244 |
4.00e-11 |
|
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349967 Cd Length: 145 Bit Score: 59.39 E-value: 4.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 116 PGNLGTLIRTADAAGLDLvILTKGTADVYQDKVL-RASQGSVFHIPIQVVDNVIDFIAHF-DGPIYGTALEEATVYHQVA 193
Cdd:cd18094 10 PQNTGNIARTCAATGARL-HLIEPLGFSLDDKRLkRAGLDYWDHVDLTVHDSWEAFLEALpPGRLFLFTTKGTKPYTDFD 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2500163999 194 TRQSHFgLIVGNEGQGVAPELL-QHATQNLTIPIYGQAESLNVAVAAGILMF 244
Cdd:cd18094 89 FKPGDY-LVFGRESTGLPEEILdAFPDRRLRIPMRPKVRSLNLSNSVAIVLY 139
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
82-243 |
1.61e-10 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 60.18 E-value: 1.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 82 SGTMTPQGVFAVIEKSEVN-----MKQAQQ---VLILDRIQDPGNLGTLIRTADAAGLDLVILTKgTADVYQDKVLRASQ 153
Cdd:PRK10864 167 SGTEHHGGVCFLIKKRNGTdvqqwLAQAGAqdcVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQD-AALLESGAAIRTAE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 154 GSVFHI-PIQVvDNVIDFIAHFDGPIY---------GTALEEATVYHQVAtrqshfgLIVGNEGQGVAPELLQHATQNLT 223
Cdd:PRK10864 246 GGAEHVqPITG-DSFVDVLDDFRQAGYtivttsshkGTPLFKASLPAKMV-------LVLGQEYDGLSDAARQQGDLSVS 317
|
170 180
....*....|....*....|
gi 2500163999 224 IPIYGQAESLNVAVAAGILM 243
Cdd:PRK10864 318 IDGTGNVESLNVSVATGVLL 337
|
|
| PRK11081 |
PRK11081 |
tRNA guanosine-2'-O-methyltransferase; Provisional |
85-244 |
2.27e-10 |
|
tRNA guanosine-2'-O-methyltransferase; Provisional
Pssm-ID: 236837 [Multi-domain] Cd Length: 229 Bit Score: 58.85 E-value: 2.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 85 MTPQGvFAVIeKSEVNMKQAQQVLILDRIQDPGNLGTLIRTADAAGLDLViltkgtADVYQDKVLR----ASQGSVFHIP 160
Cdd:PRK11081 1 MNPER-YARI-CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV------HAVWPGSRMRtmgsTAAGSNSWVQ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 161 IQVVDNVIDFIAHFDG---PIYGTALEEATV-YHQVA-TRQShfGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNV 235
Cdd:PRK11081 73 VKTHRTIGDAVAHLKGqgmQILATHLSDTAVdFREIDyTRPT--CILMGQEKTGISQEALALADQDIIIPMIGMVQSLNV 150
|
....*....
gi 2500163999 236 AVAAGILMF 244
Cdd:PRK11081 151 SVASALILY 159
|
|
| TrmL |
COG0219 |
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ... |
116-244 |
2.47e-10 |
|
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]; tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 439989 Cd Length: 153 Bit Score: 57.35 E-value: 2.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 116 PGNLGTLIRTADAAG--LDLV-----ILTkgtadvyqDKVL-RASQGSVFHIPIQVVDNVIDFIAHF-DGPIYGTALEEA 186
Cdd:COG0219 12 PQNTGNIIRLCAATGarLHLIeplgfSLD--------DKKLkRAGLDYWELVDLTVHDSWEAFLEALpGGRLFLFTTKGT 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2500163999 187 TVYHQVATRQSHFgLIVGNEGQGVAPELL-QHATQNLTIPIYGQAESLNVAVAAGILMF 244
Cdd:COG0219 84 KPYTDVDYQPGDV-LLFGRETAGLPEEVLaAPADQRLRIPMRPGVRSLNLSNAVAIVLY 141
|
|
| SpoU_sub_bind |
smart00967 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
32-96 |
4.46e-10 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 214943 [Multi-domain] Cd Length: 70 Bit Score: 54.46 E-value: 4.46e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 32 IEGPHLIEAAFQSGIIIKQLFMIE-PQRVDQGLIQHAEE----VYEINQKVAESLSGTMTPQGVFAVIEK 96
Cdd:smart00967 1 IEGRHAVEEALKSGRRIKELYLTEgRAERLKELLKLAKErgikVIEVSKKELDKLSGTANHQGVVAVVKP 70
|
|
| SpoU_sub_bind |
pfam08032 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
31-98 |
4.79e-09 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 429793 [Multi-domain] Cd Length: 74 Bit Score: 51.86 E-value: 4.79e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2500163999 31 IIEGPHLIEAAFQSGIIIKQLFMIEPQRVDQG--LIQHAEE----VYEINQKVAESLSGTMTPQGVFAVIEKSE 98
Cdd:pfam08032 1 LIYGRHAVLEALKSGPEIKKLYLTEGRRDPRLkeLLKLAKErgikVEEVDRKKLDKLSGTANHQGVVAEVKPYE 74
|
|
| SpoU-like |
cd18098 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
110-244 |
1.49e-07 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349971 Cd Length: 138 Bit Score: 49.18 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 110 LDRIQDPGNLGTLIRTADAAGLDLVILT-------KGTADVyqdkvlrasQGSVFHIPIQVVDNVIDFIAHfdgPIYGTA 182
Cdd:cd18098 5 IENPKTPKNVGTLWRAAGCLGASFVFTIgarykrrKQSTDT---------SKAWRHIPLFHYDDLEDLAEP---LPFGAV 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2500163999 183 L------EEAT-VYHQVATRQSHFglIVGNEGQGVAPELLQHATQNLTIPIYGqaeSLNVAVAAGILMF 244
Cdd:cd18098 73 LvaveltEGATpLPDFKHPDRAVY--LLGPEDGGLPQEVLARCHHVVYLPTRG---SLNVAVAGSIVLY 136
|
|
| SpoU-like_TrmJ |
cd18093 |
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl ... |
109-246 |
9.98e-05 |
|
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 32 in both tRNASer1 and tRNAGln2. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349966 Cd Length: 153 Bit Score: 41.33 E-value: 9.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500163999 109 ILDRIQDPGNLGTLIRTADAAGLDLVILTKGTADVYQDKVLRASQGSVfHI--PIQVVDNVIDFIAHFD----------- 175
Cdd:cd18093 4 VLVEPQHPGNIGAVARAMKNFGLSDLRLVNPRCDDPEEAARALASGAE-DVleNAKVYDTLEEALADCDlvvattarprg 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2500163999 176 -GPIYGTALEEATVYHQVATRQsHFGLIVGNEGQGVAPELLQHATQNLTIPIYGQAESLNVAVAAGILMFYL 246
Cdd:cd18093 83 lRRPLLTPRELAELLKEHAAGG-KVALVFGREDSGLTNEELALCDLLVTIPTNPEYPSLNLAQAVAIVLYEL 153
|
|
| |
