|
Name |
Accession |
Description |
Interval |
E-value |
| YhgE |
COG1511 |
Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown]; ... |
8-172 |
1.00e-53 |
|
Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown];
Pssm-ID: 441120 Cd Length: 225 Bit Score: 186.30 E-value: 1.00e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 8 YKTDWINIFKVPTGIFLIIAIILLPCLYDWVNIKSVWDPYANTQGVKVAVTSEDKGATVMDKEINIGEELLKSLQHNEKL 87
Cdd:COG1511 1 FKRELKRLFKNKLALIALIALILVPLLYAGLYLWAFWDPYGNLDNLPVAVVNEDKGATVDGKTVNLGDELVDELKDNDSF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 88 GWTFVTKEEAERGVDRGDYYASILIPADFSAKITGIVNGRLDRPEVIYTVNEKVNAVAPKITSSGVSAIAKQINESFTEA 167
Cdd:COG1511 81 DWQFVSEEEAEKGLKDGKYYAVIVIPEDFSANLASLLSDDPEKATITYYTNEANNYLASKITDTAATTVVDQVNSQVTET 160
|
....*
gi 2502538159 168 VSEAL 172
Cdd:COG1511 161 YAETV 165
|
|
| pip_yhgE_Cterm |
TIGR03062 |
YhgE/Pip C-terminal domain; This family contains the C-terminal domain of a family of multiple ... |
671-873 |
2.66e-52 |
|
YhgE/Pip C-terminal domain; This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Pssm-ID: 274414 [Multi-domain] Cd Length: 208 Bit Score: 181.62 E-value: 2.66e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 671 FLASPVQIKENRKYPIPNYGSAMSPFYGVLSLWVGATLLISLLKP-DPENPDGRYKPYQLYLGRLGTFVTIGLFQALCIT 749
Cdd:TIGR03062 3 MVAEPVKLKHSDYDDVPNYGTGLAPYFLSLALFVGALVLNLIFPPlSRRALPKSARSWRIALAKLLPGGLIGVIQAIILY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 750 LGDFYILEAYVADKVPFVLFAMLVSMVFVTITYTLLSVFGNVGKGIAIIFMVFQFSSSGGTFPISMTAPFFQALNPFMPF 829
Cdd:TIGR03062 83 GVLILALGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGSVGRFLALVLLVLQLGSSGGTFPIELLPAFFQAIHPFLPM 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2502538159 830 TYAISLLREGVGGILWETAIRDILMLCGFIGISLFIALALKRPL 873
Cdd:TIGR03062 163 TYSVNGLRQLISGGDDSTLWQAVAVLLLILVIFLALSLLSARRK 206
|
|
| pip_yhgE_Nterm |
TIGR03061 |
YhgE/Pip N-terminal domain; This family contains the N-terminal domain of a family of multiple ... |
32-173 |
1.08e-39 |
|
YhgE/Pip N-terminal domain; This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Pssm-ID: 274413 [Multi-domain] Cd Length: 164 Bit Score: 144.27 E-value: 1.08e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 32 PCLYDWVNIKSVWDPYANTQGVKVAVTSEDKGATVMDKEINIGEELLKSLQHNEKLGWTFVTKEEAERGVDRGDYYASIL 111
Cdd:TIGR03061 23 PLLYGGLFLWAFWDPYGNLDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHFVSAKEAEKGLADGKYYMVIT 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2502538159 112 IPADFSAKITGIVNGRLDRPEVIYTVNEKVNAVAPKITSSGVSAIAKQINESFTEAVSEALL 173
Cdd:TIGR03061 103 IPEDFSENATSLLDDQPKKAQLIYKTNDANNYIASQIAESAAEKVKTSVSKSITETYAETIF 164
|
|
| YadH |
COG0842 |
ABC-type multidrug transport system, permease component [Defense mechanisms]; |
726-871 |
4.08e-13 |
|
ABC-type multidrug transport system, permease component [Defense mechanisms];
Pssm-ID: 440604 [Multi-domain] Cd Length: 200 Bit Score: 69.07 E-value: 4.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 726 PYQLYLGRLGTFVTIGLFQALCITLGDFYILEAYVADK--VPFVLFAMLVSMVFVTITYTLLSVFGNVGKGIAIIFMVFQ 803
Cdd:COG0842 45 RLEILLGKVLAYLLRGLLQALLVLLVALLFFGVPLRGLslLLLLLVLLLFALAFSGLGLLISTLARSQEQASAISNLVIL 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2502538159 804 FSS--SGGTFPISMTAPFFQALNPFMPFTYAISLLREGV-GGILWETAIRDILMLCGFIGISLFIALALKR 871
Cdd:COG0842 125 PLTflSGAFFPIESLPGWLQAIAYLNPLTYFVEALRALFlGGAGLADVWPSLLVLLAFAVVLLALALRLFR 195
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
649-867 |
2.01e-11 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 66.26 E-value: 2.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 649 EANNHFADLAKLLRGDIKRESEFLASPVQIKENRKY-PIPNYGSAMSPFYGVLSLWVGATLLISLLKPDPENPDGRY--- 724
Cdd:pfam12698 118 NALQSLLQQLNASALVLLLEALSTSAPIPVESTPLFnPQSGYAYYLVGLILMIIILIGAAIIAVSIVEEKESRIKERllv 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 725 ---KPYQLYLGRLGTFVTIGLFQALCITLgdfYILEAYVADK--VPFVLFAMLVSMVFVTITYTLLSVFGNVGKGIAIIF 799
Cdd:pfam12698 198 sgvSPLQYWLGKILGDFLVGLLQLLIILL---LLFGIGIPFGnlGLLLLLFLLYGLAYIALGYLLGSLFKNSEDAQSIIG 274
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2502538159 800 MVF--QFSSSGGTFPISMTAPFFQALNPFMPFT-YAISLLREGVGGILWEtAIRDILMLCGFIGISLFIAL 867
Cdd:pfam12698 275 IVIllLSGFFGGLFPLEDPPSFLQWIFSIIPFFsPIDGLLRLIYGDSLWE-IAPSLIILLLFAVVLLLLAL 344
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
132-650 |
7.38e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 7.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 132 EVIYTVNEKVNAVAPKITSSgvSAIAKQINESftEAVSEALLTKLTEIGVKLEEQLPTIRKIESGIFELESKLPEIHAAG 211
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRT--ENIEELIKEK--EKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 212 QKVLEIEKKLPDIHEKaqiIPEVEKRIPEINQAADALLKIQQNWPRINDAASAVIAMEEKLpmiDQAVGRIVELDQNFGK 291
Cdd:PRK03918 245 KELESLEGSKRKLEEK---IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFY---EEYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 292 VtnavttaTQKASQAIEIVSAAQNALPRIGELADKGVDFADRLNQFFTAHDgAFETIAPLIKQ-NLILAQQASDALVQLT 370
Cdd:PRK03918 319 L-------EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEElERLKKRLTGLTPEKLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 371 DRLLQINPERLPTAAEVQAVSDKLGKAARIVEHTSALVDKLNRY-----IPGQPLTpfserlhklEEkmHRQiEILDTIA 445
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpVCGRELT---------EE--HRK-ELLEEYT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 446 KALADGKKPARDLIESLNQLaKNTSAELGDILARyDSEIVP--KIAEGIEKL--KTVVGDSAELLQKAKDRlpdieAILK 521
Cdd:PRK03918 459 AELKRIEKELKEIEEKERKL-RKELRELEKVLKK-ESELIKlkELAEQLKELeeKLKKYNLEELEKKAEEY-----EKLK 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 522 ETKAGLElglAELKRIEQELPQIQArvhelaqtLQSKSEAFAKAIHTaapfLKQHLPEIKQKLDQaAGFiqNDLPQAEAE 601
Cdd:PRK03918 532 EKLIKLK---GEIKSLKKELEKLEE--------LKKKLAELEKKLDE----LEEELAELLKELEE-LGF--ESVEELEER 593
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 2502538159 602 LTKLADFvRNKLPEVENGVHRVAELvRDDLPKLESAIAQAADKLREVEA 650
Cdd:PRK03918 594 LKELEPF-YNEYLELKDAEKELERE-EKELKKLEEELDKAFEELAETEK 640
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
276-586 |
7.55e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 7.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 276 DQAVGRIVELDQNFGKVTNAVTTATQKASQAIEIVSAAQNALPRIGELADKGVDFADRLNQFFTAHDGAFETIAPLIKQN 355
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 356 LILAQQASDALVQLTDRLLQINPERLPTAAEVQAVSDKLGKAARIVEHTSALVDKLNRyipgqPLTPFSERLHKLEEKMH 435
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE-----ALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 436 RQIEILDTIAKALADGKKPARDLIESLNQLAKNTsAELGDILARYDSEIvPKIAEGIEKLKTVVGDSAELLQKAKDRLPD 515
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDI-ESLAAEIEELEELI-EELESELEALLNERASLEEALALLRSELEE 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 516 IEAILKET------------KAGLELGLAELK--RIEQELPQIQARVHELAQTLQSKSEAFAKAIHTAAPFLKQHLPEIK 581
Cdd:TIGR02168 899 LSEELRELeskrselrreleELREKLAQLELRleGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
....*
gi 2502538159 582 QKLDQ 586
Cdd:TIGR02168 979 NKIKE 983
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
255-592 |
3.08e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.91 E-value: 3.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 255 WPRINDAASAVIAMEEKlpMIDQAVGRIVELDQNFGKVTNAVTTATQKASQAieiVSAAQNALPRIGELADKGVDFADRL 334
Cdd:pfam12128 595 WAASEEELRERLDKAEE--ALQSAREKQAAAEEQLVQANGELEKASREETFA---RTALKNARLDLRRLFDEKQSEKDKK 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 335 NQFFTAH-DGAFETIAPLIKQNLILAQQASDALVQLTDRLLQINPERLPTAAEVqaVSDKLGKAARIVEHTSALVDKLNR 413
Cdd:pfam12128 670 NKALAERkDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVV--EGALDAQLALLKAAIAARRSGAKA 747
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 414 yipgqpltpfseRLHKLEEKMHRQIEILDTIAKALADGKKPARDLIESLNQLAKNTSAelgdiLARYD-------SEIVP 486
Cdd:pfam12128 748 ------------ELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQE-----VLRYFdwyqetwLQRRP 810
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 487 KIAEGIEKLKTVV----GDSAELLQKAKDRLPDIEAILKETKAGLELGLAELKRIEQELPQIqARVHELAQTlqskseaf 562
Cdd:pfam12128 811 RLATQLSNIERAIselqQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKL-ATLKEDANS-------- 881
|
330 340 350
....*....|....*....|....*....|
gi 2502538159 563 AKAIHTAAPFLKQhLPEIKQKLDQAAGFIQ 592
Cdd:pfam12128 882 EQAQGSIGERLAQ-LEDLKLKRDYLSESVK 910
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
359-612 |
4.49e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 4.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 359 AQQASDALVQLTDRLLQINPERLPTAAEVQAVSDKLGKAARIVEHTSALVDKLNRyipgqpltpfseRLHKLEEKMHRQI 438
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ------------ELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 439 EILDTIAKALADGKKPARDLIESLNQLAKNTSAELgdILARYDSEIVPKIAEGIEKLKTVVGDSAELLQKAKDRLPDIEA 518
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLAL--LLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 519 ILKETKAGLELGLAELKRIEQELPQIQARVHELAQTLQSKSEAFAKAIhtaapflkQHLPEIKQKLDQAAGFIQNDLpQA 598
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL--------AELQQEAEELEALIARLEAEA-AA 238
|
250
....*....|....
gi 2502538159 599 EAELTKLADFVRNK 612
Cdd:COG4942 239 AAERTPAAGFAALK 252
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| YhgE |
COG1511 |
Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown]; ... |
8-172 |
1.00e-53 |
|
Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown];
Pssm-ID: 441120 Cd Length: 225 Bit Score: 186.30 E-value: 1.00e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 8 YKTDWINIFKVPTGIFLIIAIILLPCLYDWVNIKSVWDPYANTQGVKVAVTSEDKGATVMDKEINIGEELLKSLQHNEKL 87
Cdd:COG1511 1 FKRELKRLFKNKLALIALIALILVPLLYAGLYLWAFWDPYGNLDNLPVAVVNEDKGATVDGKTVNLGDELVDELKDNDSF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 88 GWTFVTKEEAERGVDRGDYYASILIPADFSAKITGIVNGRLDRPEVIYTVNEKVNAVAPKITSSGVSAIAKQINESFTEA 167
Cdd:COG1511 81 DWQFVSEEEAEKGLKDGKYYAVIVIPEDFSANLASLLSDDPEKATITYYTNEANNYLASKITDTAATTVVDQVNSQVTET 160
|
....*
gi 2502538159 168 VSEAL 172
Cdd:COG1511 161 YAETV 165
|
|
| pip_yhgE_Cterm |
TIGR03062 |
YhgE/Pip C-terminal domain; This family contains the C-terminal domain of a family of multiple ... |
671-873 |
2.66e-52 |
|
YhgE/Pip C-terminal domain; This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Pssm-ID: 274414 [Multi-domain] Cd Length: 208 Bit Score: 181.62 E-value: 2.66e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 671 FLASPVQIKENRKYPIPNYGSAMSPFYGVLSLWVGATLLISLLKP-DPENPDGRYKPYQLYLGRLGTFVTIGLFQALCIT 749
Cdd:TIGR03062 3 MVAEPVKLKHSDYDDVPNYGTGLAPYFLSLALFVGALVLNLIFPPlSRRALPKSARSWRIALAKLLPGGLIGVIQAIILY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 750 LGDFYILEAYVADKVPFVLFAMLVSMVFVTITYTLLSVFGNVGKGIAIIFMVFQFSSSGGTFPISMTAPFFQALNPFMPF 829
Cdd:TIGR03062 83 GVLILALGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGSVGRFLALVLLVLQLGSSGGTFPIELLPAFFQAIHPFLPM 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2502538159 830 TYAISLLREGVGGILWETAIRDILMLCGFIGISLFIALALKRPL 873
Cdd:TIGR03062 163 TYSVNGLRQLISGGDDSTLWQAVAVLLLILVIFLALSLLSARRK 206
|
|
| pip_yhgE_Nterm |
TIGR03061 |
YhgE/Pip N-terminal domain; This family contains the N-terminal domain of a family of multiple ... |
32-173 |
1.08e-39 |
|
YhgE/Pip N-terminal domain; This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Pssm-ID: 274413 [Multi-domain] Cd Length: 164 Bit Score: 144.27 E-value: 1.08e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 32 PCLYDWVNIKSVWDPYANTQGVKVAVTSEDKGATVMDKEINIGEELLKSLQHNEKLGWTFVTKEEAERGVDRGDYYASIL 111
Cdd:TIGR03061 23 PLLYGGLFLWAFWDPYGNLDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHFVSAKEAEKGLADGKYYMVIT 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2502538159 112 IPADFSAKITGIVNGRLDRPEVIYTVNEKVNAVAPKITSSGVSAIAKQINESFTEAVSEALL 173
Cdd:TIGR03061 103 IPEDFSENATSLLDDQPKKAQLIYKTNDANNYIASQIAESAAEKVKTSVSKSITETYAETIF 164
|
|
| YadH |
COG0842 |
ABC-type multidrug transport system, permease component [Defense mechanisms]; |
726-871 |
4.08e-13 |
|
ABC-type multidrug transport system, permease component [Defense mechanisms];
Pssm-ID: 440604 [Multi-domain] Cd Length: 200 Bit Score: 69.07 E-value: 4.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 726 PYQLYLGRLGTFVTIGLFQALCITLGDFYILEAYVADK--VPFVLFAMLVSMVFVTITYTLLSVFGNVGKGIAIIFMVFQ 803
Cdd:COG0842 45 RLEILLGKVLAYLLRGLLQALLVLLVALLFFGVPLRGLslLLLLLVLLLFALAFSGLGLLISTLARSQEQASAISNLVIL 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2502538159 804 FSS--SGGTFPISMTAPFFQALNPFMPFTYAISLLREGV-GGILWETAIRDILMLCGFIGISLFIALALKR 871
Cdd:COG0842 125 PLTflSGAFFPIESLPGWLQAIAYLNPLTYFVEALRALFlGGAGLADVWPSLLVLLAFAVVLLALALRLFR 195
|
|
| YhgE |
COG1511 |
Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown]; ... |
673-719 |
1.60e-11 |
|
Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown];
Pssm-ID: 441120 Cd Length: 225 Bit Score: 64.96 E-value: 1.60e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 2502538159 673 ASPVQIKENRKYPIPNYGSAMSPFYGVLSLWVGATLLISLLKPDPEN 719
Cdd:COG1511 165 VSPVALKTEALNPVPNYGSGLAPFFLSLALWVGALLLFLLLRPLVDR 211
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
649-867 |
2.01e-11 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 66.26 E-value: 2.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 649 EANNHFADLAKLLRGDIKRESEFLASPVQIKENRKY-PIPNYGSAMSPFYGVLSLWVGATLLISLLKPDPENPDGRY--- 724
Cdd:pfam12698 118 NALQSLLQQLNASALVLLLEALSTSAPIPVESTPLFnPQSGYAYYLVGLILMIIILIGAAIIAVSIVEEKESRIKERllv 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 725 ---KPYQLYLGRLGTFVTIGLFQALCITLgdfYILEAYVADK--VPFVLFAMLVSMVFVTITYTLLSVFGNVGKGIAIIF 799
Cdd:pfam12698 198 sgvSPLQYWLGKILGDFLVGLLQLLIILL---LLFGIGIPFGnlGLLLLLFLLYGLAYIALGYLLGSLFKNSEDAQSIIG 274
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2502538159 800 MVF--QFSSSGGTFPISMTAPFFQALNPFMPFT-YAISLLREGVGGILWEtAIRDILMLCGFIGISLFIAL 867
Cdd:pfam12698 275 IVIllLSGFFGGLFPLEDPPSFLQWIFSIIPFFsPIDGLLRLIYGDSLWE-IAPSLIILLLFAVVLLLLAL 344
|
|
| ABC2_membrane |
pfam01061 |
ABC-2 type transporter; |
722-837 |
8.12e-07 |
|
ABC-2 type transporter;
Pssm-ID: 426023 [Multi-domain] Cd Length: 204 Bit Score: 50.74 E-value: 8.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 722 GRYKPYQLYLGRLGTFVTIGLFQALCITLGDFYILEAYVADKVPF--VLFAMLVSMVFVTITYTLLSVFGNVGKGIAIIF 799
Cdd:pfam01061 83 PLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGLPPSAGRFFlfLLVLLLTALAASSLGLFISALAPSFEDASQLGP 162
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2502538159 800 MVFQFSS--SGGTFPISMTAPFFQALNPFMPFTYAISLLR 837
Cdd:pfam01061 163 LVLLPLLllSGFFIPIDSMPVWWQWIYYLNPLTYAIEALR 202
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
132-650 |
7.38e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 7.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 132 EVIYTVNEKVNAVAPKITSSgvSAIAKQINESftEAVSEALLTKLTEIGVKLEEQLPTIRKIESGIFELESKLPEIHAAG 211
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRT--ENIEELIKEK--EKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 212 QKVLEIEKKLPDIHEKaqiIPEVEKRIPEINQAADALLKIQQNWPRINDAASAVIAMEEKLpmiDQAVGRIVELDQNFGK 291
Cdd:PRK03918 245 KELESLEGSKRKLEEK---IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFY---EEYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 292 VtnavttaTQKASQAIEIVSAAQNALPRIGELADKGVDFADRLNQFFTAHDgAFETIAPLIKQ-NLILAQQASDALVQLT 370
Cdd:PRK03918 319 L-------EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEElERLKKRLTGLTPEKLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 371 DRLLQINPERLPTAAEVQAVSDKLGKAARIVEHTSALVDKLNRY-----IPGQPLTpfserlhklEEkmHRQiEILDTIA 445
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpVCGRELT---------EE--HRK-ELLEEYT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 446 KALADGKKPARDLIESLNQLaKNTSAELGDILARyDSEIVP--KIAEGIEKL--KTVVGDSAELLQKAKDRlpdieAILK 521
Cdd:PRK03918 459 AELKRIEKELKEIEEKERKL-RKELRELEKVLKK-ESELIKlkELAEQLKELeeKLKKYNLEELEKKAEEY-----EKLK 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 522 ETKAGLElglAELKRIEQELPQIQArvhelaqtLQSKSEAFAKAIHTaapfLKQHLPEIKQKLDQaAGFiqNDLPQAEAE 601
Cdd:PRK03918 532 EKLIKLK---GEIKSLKKELEKLEE--------LKKKLAELEKKLDE----LEEELAELLKELEE-LGF--ESVEELEER 593
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 2502538159 602 LTKLADFvRNKLPEVENGVHRVAELvRDDLPKLESAIAQAADKLREVEA 650
Cdd:PRK03918 594 LKELEPF-YNEYLELKDAEKELERE-EKELKKLEEELDKAFEELAETEK 640
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
276-586 |
7.55e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 7.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 276 DQAVGRIVELDQNFGKVTNAVTTATQKASQAIEIVSAAQNALPRIGELADKGVDFADRLNQFFTAHDGAFETIAPLIKQN 355
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 356 LILAQQASDALVQLTDRLLQINPERLPTAAEVQAVSDKLGKAARIVEHTSALVDKLNRyipgqPLTPFSERLHKLEEKMH 435
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE-----ALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 436 RQIEILDTIAKALADGKKPARDLIESLNQLAKNTsAELGDILARYDSEIvPKIAEGIEKLKTVVGDSAELLQKAKDRLPD 515
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDI-ESLAAEIEELEELI-EELESELEALLNERASLEEALALLRSELEE 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 516 IEAILKET------------KAGLELGLAELK--RIEQELPQIQARVHELAQTLQSKSEAFAKAIHTAAPFLKQHLPEIK 581
Cdd:TIGR02168 899 LSEELRELeskrselrreleELREKLAQLELRleGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
....*
gi 2502538159 582 QKLDQ 586
Cdd:TIGR02168 979 NKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
423-650 |
2.02e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 423 FSERLHKLEeKMHRQIEI----LDTIAKALADGKKPARDL---IESLNQLAKNTSAELGDILARYDSEIVPKIAE---GI 492
Cdd:TIGR02169 225 GYELLKEKE-ALERQKEAierqLASLEEELEKLTEEISELekrLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGEleaEI 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 493 EKLKTVVGDSAELLQKAKDRLPDIEAIL---KETKAGLELGLAELKR----IEQELPQIQARVHELAQTLQSKSEAFA-- 563
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEIdklLAEIEELEREIEEERKrrdkLTEEYAELKEELEDLRAELEEVDKEFAet 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 564 ------------KAIHTAAPFLKQ--HLPEIKQKLDQAAGFIQNDLPQAEAELTKLADFVRNKLPEVENGVHRVAELVRD 629
Cdd:TIGR02169 384 rdelkdyrekleKLKREINELKREldRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
250 260 270
....*....|....*....|....*....|....
gi 2502538159 630 -------------DLPKLESAIAQAADKLREVEA 650
Cdd:TIGR02169 464 lskyeqelydlkeEYDRVEKELSKLQRELAEAEA 497
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
255-592 |
3.08e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.91 E-value: 3.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 255 WPRINDAASAVIAMEEKlpMIDQAVGRIVELDQNFGKVTNAVTTATQKASQAieiVSAAQNALPRIGELADKGVDFADRL 334
Cdd:pfam12128 595 WAASEEELRERLDKAEE--ALQSAREKQAAAEEQLVQANGELEKASREETFA---RTALKNARLDLRRLFDEKQSEKDKK 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 335 NQFFTAH-DGAFETIAPLIKQNLILAQQASDALVQLTDRLLQINPERLPTAAEVqaVSDKLGKAARIVEHTSALVDKLNR 413
Cdd:pfam12128 670 NKALAERkDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVV--EGALDAQLALLKAAIAARRSGAKA 747
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 414 yipgqpltpfseRLHKLEEKMHRQIEILDTIAKALADGKKPARDLIESLNQLAKNTSAelgdiLARYD-------SEIVP 486
Cdd:pfam12128 748 ------------ELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQE-----VLRYFdwyqetwLQRRP 810
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 487 KIAEGIEKLKTVV----GDSAELLQKAKDRLPDIEAILKETKAGLELGLAELKRIEQELPQIqARVHELAQTlqskseaf 562
Cdd:pfam12128 811 RLATQLSNIERAIselqQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKL-ATLKEDANS-------- 881
|
330 340 350
....*....|....*....|....*....|
gi 2502538159 563 AKAIHTAAPFLKQhLPEIKQKLDQAAGFIQ 592
Cdd:pfam12128 882 EQAQGSIGERLAQ-LEDLKLKRDYLSESVK 910
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
359-612 |
4.49e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 4.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 359 AQQASDALVQLTDRLLQINPERLPTAAEVQAVSDKLGKAARIVEHTSALVDKLNRyipgqpltpfseRLHKLEEKMHRQI 438
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ------------ELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 439 EILDTIAKALADGKKPARDLIESLNQLAKNTSAELgdILARYDSEIVPKIAEGIEKLKTVVGDSAELLQKAKDRLPDIEA 518
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLAL--LLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 519 ILKETKAGLELGLAELKRIEQELPQIQARVHELAQTLQSKSEAFAKAIhtaapflkQHLPEIKQKLDQAAGFIQNDLpQA 598
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL--------AELQQEAEELEALIARLEAEA-AA 238
|
250
....*....|....
gi 2502538159 599 EAELTKLADFVRNK 612
Cdd:COG4942 239 AAERTPAAGFAALK 252
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
412-667 |
7.02e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 7.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 412 NRYIPGQPLTPFS--ERLHKLEEKMH---RQIEILDTIAKALADGKKPARDLIESLNQLAKNTSAELgDILArydseIVP 486
Cdd:COG4913 595 RRRIRSRYVLGFDnrAKLAALEAELAeleEELAEAEERLEALEAELDALQERREALQRLAEYSWDEI-DVAS-----AER 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 487 KIAEGIEKLKTVVGDSAELlQKAKDRLPDIEAILKETKAGLELGLAELKRIEQELPQIQARVHELAQTLQSKSEAFAKAI 566
Cdd:COG4913 669 EIAELEAELERLDASSDDL-AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 567 HT-AAPFLKQHLPEikQKLDQAAGFIQNDLPQAEAELTKLADFVRNKL---------------PEVENGVH---RVAELV 627
Cdd:COG4913 748 RAlLEERFAAALGD--AVERELRENLEERIDALRARLNRAEEELERAMrafnrewpaetadldADLESLPEylaLLDRLE 825
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2502538159 628 RDDLPKLESAIAQaadkLREVEANNHFADLAKLLRGDIKR 667
Cdd:COG4913 826 EDGLPEYEERFKE----LLNENSIEFVADLLSKLRRAIRE 861
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
172-682 |
1.41e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 172 LLTKLTEIGVKLEEQLPTIR-KIESGIFELESKLPEIHAAGQKVLEIEKKLPDIHEK----AQIIPEVEKRIPEINQAAD 246
Cdd:TIGR02169 414 ELQRLSEELADLNAAIAGIEaKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQElydlKEEYDRVEKELSKLQRELA 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 247 ALLKIQQNW-PRINDAASAVIAMEEKLPMIdqaVGRIVELdqnfGKVtnavttatqKASQAIEIVSAAQNALPRIgELAD 325
Cdd:TIGR02169 494 EAEAQARASeERVRGGRAVEEVLKASIQGV---HGTVAQL----GSV---------GERYATAIEVAAGNRLNNV-VVED 556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 326 KGVdfADRLNQFFTAHDGAFETIAPLIK-------QNLILAQQASDALVQLTDRLLQINP------------ERLPTAAE 386
Cdd:TIGR02169 557 DAV--AKEAIELLKRRKAGRATFLPLNKmrderrdLSILSEDGVIGFAVDLVEFDPKYEPafkyvfgdtlvvEDIEAARR 634
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 387 vqavsdkLGKAARIVEHTSALVDKlNRYIPGQPLTPFSERLHKLEEK-----MHRQIEILDTIAKALADGKKPARDLIES 461
Cdd:TIGR02169 635 -------LMGKYRMVTLEGELFEK-SGAMTGGSRAPRGGILFSRSEPaelqrLRERLEGLKRELSSLQSELRRIENRLDE 706
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 462 LNQLAKNTSAELGDILARydseivpkiaegIEKLKtvvgdsaELLQKAKDRLPDIEAILKETKAGLELGLAELKRIEQEL 541
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKE------------IEQLE-------QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI 767
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 542 PQIQARVHELAQTL----QSKSEAFAKAIHTAAPFLKQHLPEIK---QKLDQAAGFIQNDLPQAEAELTKLADfVRNKLP 614
Cdd:TIGR02169 768 EELEEDLHKLEEALndleARLSHSRIPEIQAELSKLEEEVSRIEarlREIEQKLNRLTLEKEYLEKEIQELQE-QRIDLK 846
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2502538159 615 EVENGVHRVAELVRDDLPKLESAIAQAADKLREVEANnhFADLAKLLR------GDIKRESEFLASPVQIKENR 682
Cdd:TIGR02169 847 EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR--LGDLKKERDeleaqlRELERKIEELEAQIEKKRKR 918
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
174-526 |
2.27e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 174 TKLTEIGVKLEEQLPTIRKIESGIFELESKLPEIHAagqkvlEIEKKLPDIHEKAQIIPEVEKRI-----PEINQAADAL 248
Cdd:TIGR02169 223 YEGYELLKEKEALERQKEAIERQLASLEEELEKLTE------EISELEKRLEEIEQLLEELNKKIkdlgeEEQLRVKEKI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 249 LKIQqnwpriNDAASAVIAMEEKLPMIDQAVGRIVELDQNFGKVTNAVTT--------ATQKASQAIEIVSAAQNALPRI 320
Cdd:TIGR02169 297 GELE------AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEElereieeeRKRRDKLTEEYAELKEELEDLR 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 321 GELADKGVDFA---DRLNQFFTAHDGAFETIAPLIKQNLIL---AQQASDALVQLTDRLLQINPERLPTAAEVQAVSDKL 394
Cdd:TIGR02169 371 AELEEVDKEFAetrDELKDYREKLEKLKREINELKRELDRLqeeLQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 395 GKAARIVEHTSALVDKLNryipgQPLTPFSERLHKLEEKMH---RQIEILDTIAKALAD---GKKPARDLIESLNQLAKN 468
Cdd:TIGR02169 451 KKQEWKLEQLAADLSKYE-----QELYDLKEEYDRVEKELSklqRELAEAEAQARASEErvrGGRAVEEVLKASIQGVHG 525
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 2502538159 469 TSAELGDILARYDSEIvpKIAEGiEKLKTVVGDSAELLQKAkdrlpdIEaILKETKAG 526
Cdd:TIGR02169 526 TVAQLGSVGERYATAI--EVAAG-NRLNNVVVEDDAVAKEA------IE-LLKRRKAG 573
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
430-667 |
2.98e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 430 LEEKMHRQIEILDTIAKALADGKKPARDLIESLNQLA-KNTSAELGDILARYDSEIVPKIAEGIEKLKTVvgdsaELLQK 508
Cdd:TIGR00618 210 TPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTqKREAQEEQLKKQQLLKQLRARIEELRAQEAVL-----EETQE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 509 AKDRLPDIEAILKETKAglelglaelkrieqeLPQIQARVHELAQTLQSKSEAFAKAIHTAAPFLKQHLPEIKQKLDQAA 588
Cdd:TIGR00618 285 RINRARKAAPLAAHIKA---------------VTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQT 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 589 GFIQNDL--PQAEAELTKLADFVRNKlpEVENGVHRVAELVRDDLPKLESAiAQAADKLREVEANNHFADLA-KLLRGDI 665
Cdd:TIGR00618 350 LHSQEIHirDAHEVATSIREISCQQH--TLTQHIHTLQQQKTTLTQKLQSL-CKELDILQREQATIDTRTSAfRDLQGQL 426
|
..
gi 2502538159 666 KR 667
Cdd:TIGR00618 427 AH 428
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
353-673 |
3.17e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 353 KQNLILAQQASDALVQLTDRLLQINpERLPTA----AEVQAVSDKLGKAARIVEHTSALVDKLNRyipgqpLTPFSERLH 428
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELE-EELEELeaelEELREELEKLEKLLQLLPLYQELEALEAE------LAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 429 KLEEKMHRQIEILDTIAKALADGKKPARDLIESLNQLAKNTSAELGDILARYDseivpKIAEGIEKLKtvvgdsaELLQK 508
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE-----ELQQRLAELE-------EELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 509 AKDRLPDIEAILKETKAGLELgLAELKRIEQE--LPQIQARVHELAQTLQSKSE------AFAKAIHTAAPFLKQHLPEI 580
Cdd:COG4717 218 AQEELEELEEELEQLENELEA-AALEERLKEArlLLLIAAALLALLGLGGSLLSliltiaGVLFLVLGLLALLFLLLARE 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 581 KQKLDQAAGFIQNDLPQAEAELTKLADFVRNKLPEVENGVHRVAELVRdDLPKLESAIAQAADKLREVEANNHFADLAKL 660
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLD-RIEELQELLREAEELEEELQLEELEQEIAAL 375
|
330
....*....|....
gi 2502538159 661 L-RGDIKRESEFLA 673
Cdd:COG4717 376 LaEAGVEDEEELRA 389
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
425-674 |
3.32e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 3.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 425 ERLHKLEEKMHRQIEILDTIAKALADgkkpARDLIESLNQLAKNTSAELGDILARydseiVPKIAEGIEKLKTVVGDSAE 504
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEE----LRLELEELELELEEAQAEEYELLAE-----LARLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 505 LLQKAKDRLPDIEAILKETKAGLELGLAELKRIEQELPQIQARVHELAQTLQSKSEAFAKAIHTAAPFLKQHLpEIKQKL 584
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL-EALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 585 DQAAGFIQNDLPQAEAELTKLADFVRNKLPEVENGVHRVAELVRDDLPKLESAIAQAADKLREVEANNHFADLAKLLRGD 664
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250
....*....|
gi 2502538159 665 IKRESEFLAS 674
Cdd:COG1196 476 EAALAELLEE 485
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
275-475 |
1.44e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 42.37 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 275 IDQA---VGRIVELDQNFGKVTNAVTTAtQKASQAIEIVSAA-QNALPRIGELADkgvdfadRLNQFfTAHDGAFETIAP 350
Cdd:COG0497 198 LEAAalqPGEEEELEEERRRLSNAEKLR-EALQEALEALSGGeGGALDLLGQALR-------ALERL-AEYDPSLAELAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 351 LIKQNLILAQQASDALVQLTDRLlQINPERLptaAEVQAVSDKLGKAAR--------IVEHTSALVDKLNRyipgqpLTP 422
Cdd:COG0497 269 RLESALIELEEAASELRRYLDSL-EFDPERL---EEVEERLALLRRLARkygvtveeLLAYAEELRAELAE------LEN 338
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2502538159 423 FSERLHKLEEKMHRQIEILDTIAKALADgkkpARdlIESLNQLAKNTSAELGD 475
Cdd:COG0497 339 SDERLEELEAELAEAEAELLEAAEKLSA----AR--KKAAKKLEKAVTAELAD 385
|
|
| Apolipoprotein |
pfam01442 |
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a ... |
471-611 |
1.73e-03 |
|
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.
Pssm-ID: 460211 [Multi-domain] Cd Length: 175 Bit Score: 40.32 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 471 AELGDILARYDSEIVPKIAEGIEKLKT-VVGDSAELLQKAKDRLPDIEAILKETKAGLELGLAEL-----KRIEQELPQI 544
Cdd:pfam01442 14 EELQEQLGPVAQELVDRLEKETEALRErLQKDLEEVRAKLEPYLEELQAKLGQNVEELRQRLEPYteelrKRLNADAEEL 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2502538159 545 QARVHELAQTLQSKSEAFAKAIHTA-APF-------LKQHLPEIKQKLDQAAGFIQNDLPQAEAEL-TKLADFVRN 611
Cdd:pfam01442 94 QEKLAPYGEELRERLEQNVDALRARlAPYaeelrqkLAERLEELKESLAPYAEEVQAQLSQRLQELrEKLEPQAED 169
|
|
| TagG |
COG1682 |
ABC-type polysaccharide/teichoic acid/polyol phosphate export permease [Carbohydrate transport ... |
764-869 |
1.82e-03 |
|
ABC-type polysaccharide/teichoic acid/polyol phosphate export permease [Carbohydrate transport and metabolism];
Pssm-ID: 441288 [Multi-domain] Cd Length: 258 Bit Score: 40.94 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 764 VPFVLFAMLVSMVFVTITYTLLSV-FGNVGKGIAIIFMVFQFSSsGGTFPISMTAPFFQALNPFMPFTYAISLLREGVGG 842
Cdd:COG1682 142 LPLALLLLLLFGLGLGLLLAALNVfFRDVQQIVGLLLQLLFFLS-PVFYPLSTLPEPLRWLLLLNPLTHIIELFRAALLG 220
|
90 100
....*....|....*....|....*..
gi 2502538159 843 ILWETAIrDILMLCGFIGISLFIALAL 869
Cdd:COG1682 221 GYLPDWL-SLLYALLVSLVLLLLGLLL 246
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
515-647 |
4.68e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 515 DIEAILKETKAGLELGLAELKRIEQELPQIQARVHELAQTLQSKSEAfAKAIHTaapfLKQHLPEIKQKLDQAAGFIQN- 593
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL-EEELEE----LEAELEELREELEKLEKLLQLl 128
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2502538159 594 ----DLPQAEAELTKLADfvrnKLPEVENGVHRVAELvRDDLPKLESAIAQAADKLRE 647
Cdd:COG4717 129 plyqELEALEAELAELPE----RLEELEERLEELREL-EEELEELEAELAELQEELEE 181
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
140-583 |
4.96e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 4.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 140 KVNAVAPKITSSGVSAIAKQINEsftEAVSEALLTKLTEIGVKLEEQLPTIRKIESGI-----------------FELES 202
Cdd:COG4717 60 KPQGRKPELNLKELKELEEELKE---AEEKEEEYAELQEELEELEEELEELEAELEELreeleklekllqllplyQELEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 203 KLPEIHAAGQKVLEIEKKLPDIHEKAQIIPEVEKRIPEINQAADALLKI--QQNWPRINDAASAVIAMEEKLPMIDQAVG 280
Cdd:COG4717 137 LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQlsLATEEELQDLAEELEELQQRLAELEEELE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 281 RIVE----LDQNFGKVTNAVttATQKASQAIEIVSAAQNALPRIGELADKGVDFADRLNQFFTAhdgAFETIAPLIKQNL 356
Cdd:COG4717 217 EAQEeleeLEEELEQLENEL--EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGV---LFLVLGLLALLFL 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 357 ILAQQASDALVQLTDRLLQINPERLpTAAEVQAVSDKLG-KAARIVEHTSALVDKLNRYIPGQpltpfsERLHKLEEKMh 435
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEEL-EEEELEELLAALGlPPDLSPEELLELLDRIEELQELL------REAEELEEEL- 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 436 RQIEILDTIAKALADGK--------------KPARDLIESLNQLAKNTSAELGDILARYDSEIVPKIAEGIEKLKTVVGD 501
Cdd:COG4717 364 QLEELEQEIAALLAEAGvedeeelraaleqaEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEE 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 502 SAELLQKAKDRLPDIEAILKETKAGLELGlaelkRIEQELPQIQARVHELAQTLQSKSEAFAKAIHTAAPFLKQHLPEIK 581
Cdd:COG4717 444 LEEELEELREELAELEAELEQLEEDGELA-----ELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPVL 518
|
..
gi 2502538159 582 QK 583
Cdd:COG4717 519 ER 520
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
231-495 |
6.34e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 6.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 231 IPEV--------EKRIPEINQAADALL-----------KIQqnwpRINDAASAVIAMEEKL-------PMIDQAVGRIVE 284
Cdd:PRK04863 773 FPEVplfgraarEKRIEQLRAEREELAeryatlsfdvqKLQ----RLHQAFSRFIGSHLAVafeadpeAELRQLNRRRVE 848
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 285 LDQNFGKVTNAVTTATQKASQAIEIVSAAQNALPRIGELADKgvDFADRLN-------------QFFTAHDGAF---ETI 348
Cdd:PRK04863 849 LERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADE--TLADRVEeireqldeaeeakRFVQQHGNALaqlEPI 926
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 349 APLIKQNlilaQQASDAL---VQLTDRLLQINPERLPTAAEVQAVSDKLG--KAARIVEHTSALVDKLnryipgqpltpf 423
Cdd:PRK04863 927 VSVLQSD----PEQFEQLkqdYQQAQQTQRDAKQQAFALTEVVQRRAHFSyeDAAEMLAKNSDLNEKL------------ 990
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2502538159 424 SERLHKLEEKMHRQIEILDTIAKALADGKKPARDLIES---LNQLAKNTSAELGDILARYDSEIVPKIAEGIEKL 495
Cdd:PRK04863 991 RQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSydaKRQMLQELKQELQDLGVPADSGAEERARARRDEL 1065
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
494-660 |
8.61e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.50 E-value: 8.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 494 KLKTVVGDSAELLQKAKDRLPDIEAILKETKAGLELGLAELKRIEQELPQIQARVHELAQTLQSKSEAFAKAIHTAAPfL 573
Cdd:COG4372 21 KTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQ-A 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 574 KQHLPEIKQKLDQaagfIQNDLPQAEAELTKLADfVRNKLPEVENGVHRVAELVRDDLPKLESAIAQAADKLREVEANNH 653
Cdd:COG4372 100 QEELESLQEEAEE----LQEELEELQKERQDLEQ-QRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQ 174
|
....*..
gi 2502538159 654 FADLAKL 660
Cdd:COG4372 175 ALSEAEA 181
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
369-681 |
8.70e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 8.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 369 LTDRLLQINPERLPTAAEVQAVSDKLGKAARIVEHTSALVDKLNRYIpgqpltpfserlHKLEEKMHRQIEILDTIAKAL 448
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV------------SELEEEIEELQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 449 ADGKKPARDLIESLNQLaKNTSAELGDILARYDSEIvpkiaegieklktvvgdsaELLQKAKDRLPDIEAILKETKAGLE 528
Cdd:TIGR02168 298 SRLEQQKQILRERLANL-ERQLEELEAQLEELESKL-------------------DELAEELAELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 529 LGLAELKRIEQELpqiQARVHELAQTLQSKSEAFAKAIHTAAPfLKQHLPEIKQKLDQAAGFIQNDLPQAEAELTKLadf 608
Cdd:TIGR02168 358 AELEELEAELEEL---ESRLEELEEQLETLRSKVAQLELQIAS-LNNEIERLEARLERLEDRRERLQQEIEELLKKL--- 430
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2502538159 609 VRNKLPEVENGVHRVAELVRDDLPKLESAIAQAADKLREVEANNHFADLAkllRGDIKRESEFLASPVQIKEN 681
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA---ERELAQLQARLDSLERLQEN 500
|
|
| PTPS_related |
pfam10131 |
6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; This domain is found in ... |
758-877 |
9.31e-03 |
|
6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; This domain is found in various bacterial hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. The exact function of the domain has not, as yet, been established.
Pssm-ID: 401941 Cd Length: 621 Bit Score: 39.71 E-value: 9.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 758 AYVADKVPFVLFAMLVSMVFVTiTYTLLSVFGNVGKGIAIIFMVFQF--SSSGGTFPI----------SMTAPFFQALNP 825
Cdd:pfam10131 120 AMVAAIVGLAIFLFLLIYEIRR-KRFLRNLFALVAIGLGIAISSFWLypALKGGLTSIdsgsvswvmkSLTVPLTVSLDP 198
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2502538159 826 FMP-----FTYAISLLREGVGGILWETAIRDILMLCGFI----GISLFIALALKRPLSGLI 877
Cdd:pfam10131 199 FLRlrngfFYFGLSIGLLILAGILLAKKRRTPGFVALIIylvgTTGAALPILVKLPLNQLF 259
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
154-649 |
9.77e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 39.66 E-value: 9.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 154 SAIAKQINESFTEAvsEALLTKLTEIGVKLEEQLPTIRKIESGIFELESKLPEIHAagqKVLEIEKKLPDIHEKAQIIPE 233
Cdd:PRK03918 168 GEVIKEIKRRIERL--EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELRE---ELEKLEKEVKELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 234 VEKRIPEINQAADAL-LKIQQNWPRINDAASAVIAMEEKLPMIDQAVG------RIVELDQNFGKVTNAV----TTATQK 302
Cdd:PRK03918 243 LEKELESLEGSKRKLeEKIRELEERIEELKKEIEELEEKVKELKELKEkaeeyiKLSEFYEEYLDELREIekrlSRLEEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 303 ASQAIEIVSAAQNALPRIGELADKGVDFADRLNQFFTAHDgAFETIAPLIKQnlilaqqasdaLVQLTDRLLQINPERLp 382
Cdd:PRK03918 323 INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEE-----------LERLKKRLTGLTPEKL- 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 383 tAAEVQAVSDKlgkAARIVEHTSALVDKLNRyipgqpltpfserLHKLEEKMHRQIEILDTiakalADGKKP--ARDLIE 460
Cdd:PRK03918 390 -EKELEELEKA---KEEIEEEISKITARIGE-------------LKKEIKELKKAIEELKK-----AKGKCPvcGRELTE 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 461 SlnqlakntsaELGDILARYDSEivpkiaegieklktvvgdsaellqkakdrLPDIEAILKETKAGLELGLAELKRIEQE 540
Cdd:PRK03918 448 E----------HRKELLEEYTAE-----------------------------LKRIEKELKEIEEKERKLRKELRELEKV 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502538159 541 LPQIQ--ARVHELAQTLQSKSEAFAKAIHTAAPFLKQHLPEIKQKLDQAAGFIQNdlpqAEAELTKLADFvRNKLPEVEN 618
Cdd:PRK03918 489 LKKESelIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKS----LKKELEKLEEL-KKKLAELEK 563
|
490 500 510
....*....|....*....|....*....|....*
gi 2502538159 619 GVHRVAELVRDDLPKLE----SAIAQAADKLREVE 649
Cdd:PRK03918 564 KLDELEEELAELLKELEelgfESVEELEERLKELE 598
|
|
| |
