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Conserved domains on  [gi|2507255136|ref|WP_282984557|]
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OmpA family protein [Cronobacter dublinensis]

Protein Classification

OmpA family protein( domain architecture ID 10163224)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0016020|GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 438-540 1.13e-37

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 134.60  E-value: 1.13e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 438 LFDTGQWALKPGSTKVLVNALVGIRAKPGWLIVVAGHTDDVGDERANQHLSFKRAQAVRDWMRDTGDVPERcFAVQGYGE 517
Cdd:cd07185     5 YFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASR-ITAVGYGE 83

                          90       100
                  ....*....|....*....|...
gi 2507255136 518 SRPVASNATAEGRAQNRRVEIRL 540
Cdd:cd07185    84 SRPIASNDTEEGRAKNRRVEIVI 106
IcmF super family cl34628
Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and ...
 311-408 1.20e-08

Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG3523:

Pssm-ID: 442745 [Multi-domain]  Cd Length: 1192  Bit Score: 58.04  E-value: 1.20e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136  311 VSRRMSEARLAGLIAFIFLALAMLA----SFINNQRLVRDTGDHLAVYRQLSGQPPGPKAQ----------AQRHLRADS 376
Cdd:COG3523    438 WERRRRWLRRAAYAAAALALLGLLGgwtwSYLNNRRLLAEVEAKVDAYRALAAALLVADTDlaallpalnaLRDLPAGYG 517

                           90       100       110
                   ....*....|....*....|....*....|..
gi 2507255136  377 QRLDEWlrrgePLRYGLGLYQGMRLIPPLEAA 408
Cdd:COG3523    518 YRRDDP-----PLSAGLGLYQGDKLGPAARAA 544
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 438-540 1.13e-37

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 134.60  E-value: 1.13e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 438 LFDTGQWALKPGSTKVLVNALVGIRAKPGWLIVVAGHTDDVGDERANQHLSFKRAQAVRDWMRDTGDVPERcFAVQGYGE 517
Cdd:cd07185     5 YFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASR-ITAVGYGE 83

                          90       100
                  ....*....|....*....|...
gi 2507255136 518 SRPVASNATAEGRAQNRRVEIRL 540
Cdd:cd07185    84 SRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 403-543 7.29e-35

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 133.37  E-value: 7.29e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 403 PPLEAAISDWTPPPPPAPVKTLAAAPQMVRLDSLSLFDTGQWALKPGSTKVLVNALVGIRAKPGWLIVVAGHTDDVGDER 482
Cdd:COG2885   155 SAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDA 234

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2507255136 483 ANQHLSFKRAQAVRDWMRDTGdVPERCFAVQGYGESRPVASNATAEGRAQNRRVEIRLMPQ 543
Cdd:COG2885   235 YNLALSERRAEAVKDYLVSKG-IPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 431-540 3.23e-23

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 95.45  E-value: 3.23e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 431 VRLDSLSLFDTGQWALKPGSTKVLVNALVGIRAKPGwLIVVAGHTDDVGDERA----NQHLSFKRAQAVRDWMRDTGDVP 506
Cdd:TIGR03350  26 VRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVPG-RITVVGHTDNVPIRTArfpsNWHLSEARAKAVADVLAQAGGPA 104

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2507255136 507 ERcFAVQGYGESRPVASNATAEGRAQNRRVEIRL 540
Cdd:TIGR03350 105 GR-VRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
motB PRK08944
flagellar motor protein MotB; Reviewed
 443-556 6.01e-18

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 84.68  E-value: 6.01e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 443 QWALKPgstkvLVNALVGIRAK-PGwLIVVAGHTDDVGDE----RANQHLSFKRAQAVRDWMRDTGDVPERCFAVQGYGE 517
Cdd:PRK08944  191 QPKFKP-----VVRKIGELLKDvPG-IITVSGHTDNVPISselyRSNWDLSSARAVAVAHELLKVKGFDPQRLKVVGMAD 264

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2507255136 518 SRPVASNATAEGRAQNRRVEIRLMpQADACQAPDIPLPP 556
Cdd:PRK08944  265 TQPLVPNDTAENRARNRRVEIIIE-QGKAKESDEIPVKD 302
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 439-533 2.94e-17

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 77.01  E-value: 2.94e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 439 FDTGQWALKPgSTKVLVNALVGIRAKPG--WLIVVAGHTDDVGDERANQHLSFKRAQAVRDWMRDTGdVPERCFAVQGYG 516
Cdd:pfam00691   1 FDPGSSQLTP-KAKATLDEIADLLKFPElkNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFG-VPPSRISVVGYG 78

                          90
                  ....*....|....*..
gi 2507255136 517 ESRPVASNATAEGRAQN 533
Cdd:pfam00691  79 ATKPITDNKTPEGRARN 95
IcmF COG3523
Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and ...
 311-408 1.20e-08

Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442745 [Multi-domain]  Cd Length: 1192  Bit Score: 58.04  E-value: 1.20e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136  311 VSRRMSEARLAGLIAFIFLALAMLA----SFINNQRLVRDTGDHLAVYRQLSGQPPGPKAQ----------AQRHLRADS 376
Cdd:COG3523    438 WERRRRWLRRAAYAAAALALLGLLGgwtwSYLNNRRLLAEVEAKVDAYRALAAALLVADTDlaallpalnaLRDLPAGYG 517

                           90       100       110
                   ....*....|....*....|....*....|..
gi 2507255136  377 QRLDEWlrrgePLRYGLGLYQGMRLIPPLEAA 408
Cdd:COG3523    518 YRRDDP-----PLSAGLGLYQGDKLGPAARAA 544
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 438-540 1.13e-37

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 134.60  E-value: 1.13e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 438 LFDTGQWALKPGSTKVLVNALVGIRAKPGWLIVVAGHTDDVGDERANQHLSFKRAQAVRDWMRDTGDVPERcFAVQGYGE 517
Cdd:cd07185     5 YFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASR-ITAVGYGE 83

                          90       100
                  ....*....|....*....|...
gi 2507255136 518 SRPVASNATAEGRAQNRRVEIRL 540
Cdd:cd07185    84 SRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 403-543 7.29e-35

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 133.37  E-value: 7.29e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 403 PPLEAAISDWTPPPPPAPVKTLAAAPQMVRLDSLSLFDTGQWALKPGSTKVLVNALVGIRAKPGWLIVVAGHTDDVGDER 482
Cdd:COG2885   155 SAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDA 234

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2507255136 483 ANQHLSFKRAQAVRDWMRDTGdVPERCFAVQGYGESRPVASNATAEGRAQNRRVEIRLMPQ 543
Cdd:COG2885   235 YNLALSERRAEAVKDYLVSKG-IPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
MotB COG1360
Flagellar motor protein MotB [Cell motility];
430-546 1.64e-27

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 108.78  E-value: 1.64e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 430 MVRLDSLSLFDTGQWALKPGSTKVLvNALVGIRAKPGWLIVVAGHTDDV----GDERANQHLSFKRAQAVRDWMRDTGDV 505
Cdd:COG1360    54 VIEIQDRVLFDSGSAELTPEGRELL-DKIAAVLAEVPNRIRVEGHTDNVpistARFPSNWELSAARAAAVVRYLIEGGVP 132

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2507255136 506 PERcFAVQGYGESRPVASNATAEGRAQNRRVEIRLMPQADA 546
Cdd:COG1360   133 PER-LSAVGYGDTRPLAPNDTPEGRARNRRVEIVILRRAAE 172
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 431-540 3.23e-23

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 95.45  E-value: 3.23e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 431 VRLDSLSLFDTGQWALKPGSTKVLVNALVGIRAKPGwLIVVAGHTDDVGDERA----NQHLSFKRAQAVRDWMRDTGDVP 506
Cdd:TIGR03350  26 VRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVPG-RITVVGHTDNVPIRTArfpsNWHLSEARAKAVADVLAQAGGPA 104

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2507255136 507 ERcFAVQGYGESRPVASNATAEGRAQNRRVEIRL 540
Cdd:TIGR03350 105 GR-VRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
motB PRK08944
flagellar motor protein MotB; Reviewed
 443-556 6.01e-18

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 84.68  E-value: 6.01e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 443 QWALKPgstkvLVNALVGIRAK-PGwLIVVAGHTDDVGDE----RANQHLSFKRAQAVRDWMRDTGDVPERCFAVQGYGE 517
Cdd:PRK08944  191 QPKFKP-----VVRKIGELLKDvPG-IITVSGHTDNVPISselyRSNWDLSSARAVAVAHELLKVKGFDPQRLKVVGMAD 264

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2507255136 518 SRPVASNATAEGRAQNRRVEIRLMpQADACQAPDIPLPP 556
Cdd:PRK08944  265 TQPLVPNDTAENRARNRRVEIIIE-QGKAKESDEIPVKD 302
motB PRK07734
flagellar motor protein MotB; Reviewed
 433-546 1.42e-17

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 82.87  E-value: 1.42e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 433 LDSLsLFDTGQWALKPGS---TKVLVNALVgirAKPGWLIVVAGHTDDV----GDERANQHLSFKRAQAVRDWMRDTGDV 505
Cdd:PRK07734  141 LDNI-LFDSGKADVRLEDlplAKEISNLLV---SNPPRNITISGHTDNVpianAQFASNWELSVMRAVNFMQVLLENKEL 216

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2507255136 506 PERCFAVQGYGESRPVASNATAEGRAQNRRVEIRLMPQADA 546
Cdd:PRK07734  217 DPEKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLILPLTEK 257
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 439-533 2.94e-17

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 77.01  E-value: 2.94e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 439 FDTGQWALKPgSTKVLVNALVGIRAKPG--WLIVVAGHTDDVGDERANQHLSFKRAQAVRDWMRDTGdVPERCFAVQGYG 516
Cdd:pfam00691   1 FDPGSSQLTP-KAKATLDEIADLLKFPElkNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFG-VPPSRISVVGYG 78

                          90
                  ....*....|....*..
gi 2507255136 517 ESRPVASNATAEGRAQN 533
Cdd:pfam00691  79 ATKPITDNKTPEGRARN 95
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 431-538 3.52e-17

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 81.98  E-value: 3.52e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 431 VRLDSLSLFDTGQWALKPGSTKVLvNALVGIRAKPGWLIVVAGHTDDVGDERA----NQHLSFKRAQAVRDWMRDTGDVP 506
Cdd:PRK09038  129 IEINSSLLFGSGDAMLSDQAFAIL-EKVAEVLKPAPNPIHVEGFTDNVPIATAqfpsNWELSAARAASVVRLLADDGVAP 207

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2507255136 507 ERCFAVqGYGESRPVASNATAEGRAQNRRVEI 538
Cdd:PRK09038  208 SRLAAV-GYGEFQPVADNDTAEGRARNRRVVL 238
PRK10510 PRK10510
OmpA family lipoprotein;
439-542 2.78e-16

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 77.99  E-value: 2.78e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 439 FDTGQWALKPGSTKVLVNALVGIRAKPGWLIVVAGHTDDVGDERANQHLSFKRAQAVRDWMRDTGDVPERcFAVQGYGES 518
Cdd:PRK10510  116 FDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASR-IRTQGMGPA 194

                          90       100
                  ....*....|....*....|....
gi 2507255136 519 RPVASNATAEGRAQNRRVEIRLMP 542
Cdd:PRK10510  195 NPIASNSTAEGKAQNRRVEITLSP 218
PRK09967 PRK09967
OmpA family protein;
438-538 3.34e-16

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 76.17  E-value: 3.34e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 438 LFDTGQWALKPGSTKVLVNALVGIRAKPGWLIVVAGHTDDVGDERANQHLSFKRAQAVRDWMRDTGDVPERCFAVQGYGE 517
Cdd:PRK09967   55 LFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGK 134

                          90       100
                  ....*....|....*....|.
gi 2507255136 518 SRPVASNATAEGRAQNRRVEI 538
Cdd:PRK09967  135 KYPIASNKTAQGRAENRRVAV 155
PRK07033 PRK07033
DotU family type VI secretion system protein;
469-546 1.28e-14

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 76.24  E-value: 1.28e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 469 IVVAGHTDDVGDERA----NQHLSFKRAQAVRDWMRDTGDVPERcFAVQGYGESRPVASNATAEGRAQNRRVEIRLMPQA 544
Cdd:PRK07033  347 VLVTGYSDNVPIRTArfpsNWELSQARAQAVRALLAARLGQPER-VTAEGRGDSDPVAPNDSAENRARNRRVEITLLVAP 425


                  ..
gi 2507255136 545 DA 546
Cdd:PRK07033  426 GS 427
motB PRK06667
flagellar motor protein MotB; Validated
 447-552 1.31e-14

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 73.68  E-value: 1.31e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 447 KPGSTKVLVN----------ALVGIRAKPGWLIVVAGHTDDV-----GDERANQHLSFKRAQAVRDWMRDTGDVPERCFA 511
Cdd:PRK06667  130 YPGSAEVKLEenretlqkiaSFIGFLDLAGRNFRIEGHTDNVdvnpeGPWKSNWELSGARAVNMLEYILNYGDQSESWFQ 209

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2507255136 512 VQGYGESRPVASNATAEGRAQNRRVEIRLMPQADACQAPDI 552
Cdd:PRK06667  210 VSGFAGSRPLATEDTPEGRAYNRRIDIVILTDASLSRSKGI 250
PRK09039 PRK09039
peptidoglycan -binding protein;
438-540 1.98e-13

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 71.54  E-value: 1.98e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 438 LFDTGQWALKP-GSTKV--LVNALVGIRAK-PG---WLIVVAGHTDDV-----GDERANQHLSFKRAQAVRDWMRDTGdV 505
Cdd:PRK09039  227 LFPTGSAELNPeGQAEIakLAAALIELAKEiPPeinWVLRVDGHTDNVplsgtGRFRDNWELSSARAISVVKFLIALG-V 305

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2507255136 506 PERCFAVQGYGESRPVASNATAEGRAQNRRVEIRL 540
Cdd:PRK09039  306 PADRLAAAGFGEFQPLDPGDTPEARARNRRIELKL 340
PRK10808 PRK10808
outer membrane protein A; Reviewed
 425-540 1.98e-12

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 68.56  E-value: 1.98e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 425 AAAPQMV----RLDSLSLFDTGQWALKP-GSTKV--LVNALVGIRAKPGwLIVVAGHTDDVGDERANQHLSFKRAQAVRD 497
Cdd:PRK10808  210 APAPVVQtkhfTLKSDVLFNFNKATLKPeGQQALdqLYSQLSNLDPKDG-SVVVLGYTDRIGSDAYNQGLSEKRAQSVVD 288

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2507255136 498 WMRDTGdVPERCFAVQGYGESRPVASNATAEGR---------AQNRRVEIRL 540
Cdd:PRK10808  289 YLVSKG-IPADKISARGMGKSNPVTGNTCDNVKpraalidclAPDRRVEIEV 339
PRK08126 PRK08126
hypothetical protein; Provisional
 437-538 2.20e-12

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 68.95  E-value: 2.20e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 437 SLFDTGQWALKPgSTKVLVNALVGIRAKPGWLIVVAGHTDDVGDERA----NQHLSFKRAQAVRDWMRDTGDVPERCFAV 512
Cdd:PRK08126  325 AMFVPGQATVNP-AMGPLIAKIAREIARVGGKVTVTGHTDNQPIRSAqfasNLVLSEKRAAQVAQMLQSAGVPASRLEAV 403

                          90       100
                  ....*....|....*....|....*.
gi 2507255136 513 qGYGESRPVASNATAEGRAQNRRVEI 538
Cdd:PRK08126  404 -GKGDAQPVADNRTPQGRAQNRRVEI 428
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 439-540 2.23e-11

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 60.65  E-value: 2.23e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 439 FDTGQWALKPGSTKVLVNALVGIRAKPGWLIVVAGHTDDVGDERANQHLSFKRAQAVRDWMRDTGdVPERCFAVQGYGES 518
Cdd:TIGR02802   4 FDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKG-VSASQIETVSYGKE 82

                          90       100
                  ....*....|....*....|..
gi 2507255136 519 RPVASNATAEGRAQNRRVEIRL 540
Cdd:TIGR02802  83 KPAALGHDEAAWAKNRRAVLVY 104
PRK06925 PRK06925
flagellar motor protein MotB;
438-538 2.87e-11

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 63.63  E-value: 2.87e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 438 LFDTGQWALKPGSTKVLVNALVGIRAKPGwLIVVAGHTDD--VGDER--ANQHLSFKRAQAVRDWMRDTGDVPERCFAVQ 513
Cdd:PRK06925  121 LFETGEADILKQAEPFLHKIGVLLSTIPN-DIKVEGHTDSrpISTYRypSNWELSAARASSVIRYFTSKEKLDSSRFIAV 199

                          90       100
                  ....*....|....*....|....*
gi 2507255136 514 GYGESRPVASNATAEGRAQNRRVEI 538
Cdd:PRK06925  200 GYADTKPVVPNTTEENMQENRRVEI 224
PRK09040 PRK09040
hypothetical protein; Provisional
 468-550 1.21e-09

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 58.49  E-value: 1.21e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 468 LIVVAGHTDDV----GDER--ANQHLSFKRAQAVRDWMRDTGDVPERCFAVqGYGESRPVASNATAEGRAQNRRVEIRLM 541
Cdd:PRK09040  124 ILMVSGFTDDQpvraGNRRfaDNWELSAQRALTVTRALIDAGVPASSVFAA-AFGSEQPVASNADDEGRAKNRRVEIAPV 202


                  ....*....
gi 2507255136 542 PQADACQAP 550
Cdd:PRK09040  203 PRPSASAGA 211
IcmF COG3523
Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and ...
 311-408 1.20e-08

Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442745 [Multi-domain]  Cd Length: 1192  Bit Score: 58.04  E-value: 1.20e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136  311 VSRRMSEARLAGLIAFIFLALAMLA----SFINNQRLVRDTGDHLAVYRQLSGQPPGPKAQ----------AQRHLRADS 376
Cdd:COG3523    438 WERRRRWLRRAAYAAAALALLGLLGgwtwSYLNNRRLLAEVEAKVDAYRALAAALLVADTDlaallpalnaLRDLPAGYG 517

                           90       100       110
                   ....*....|....*....|....*....|..
gi 2507255136  377 QRLDEWlrrgePLRYGLGLYQGMRLIPPLEAA 408
Cdd:COG3523    518 YRRDDP-----PLSAGLGLYQGDKLGPAARAA 544
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 430-538 1.73e-08

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 55.07  E-value: 1.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 430 MVRLDSLsLFDTGQWALKPgSTKVLVNALVGIRAKPGWLIVVAGHTDD--VGDER--ANQHLSFKRAQAVRDWMRDTGDV 505
Cdd:PRK06742  111 VVIVDNL-IFDTGDANVKP-EAKEIISQLVGFFQSVPNPIVVEGHTDSrpIHNDKfpSNWELSSARAANMIHHLIEVYNV 188

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2507255136 506 PERCFAVQGYGESRPVASNATAEGRAQNRRVEI 538
Cdd:PRK06742  189 DDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVI 221
motB PRK08457
flagellar motor protein MotB; Reviewed
 469-538 2.40e-07

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 52.03  E-value: 2.40e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2507255136 469 IVVAGHTDD--VGDERANQH--LSFKRAQAVRDWMRDTGDVPERcFAVQGYGESRPVASNATAEGRAQNRRVEI 538
Cdd:PRK08457  158 INVRGYTDNspLNKSRYKDHyeLAAARAYNVMKVLIQYGINPNR-LSFSSYGSNNPIAPNDSLENRLKNNRVEI 230
PRK07034 PRK07034
hypothetical protein; Provisional
 469-538 5.96e-07

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 52.10  E-value: 5.96e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2507255136 469 IVVAGHTDD----VGDERANQHLSFKRAQAVRDWMRDTGDVPE---RCFAVQGYGESRPVASNATAEGRAQNRRVEI 538
Cdd:PRK07034  429 IEVIGHTDNkpfrSTSGNNNLKLSAARASVVADKLRESTQINEthqREISAIGRGESDPLADNATEEGRKRNRRVDI 505
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
461-535 7.04e-04

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 40.62  E-value: 7.04e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2507255136 461 IRAKPGWLIVVAGHTDDVGDERANQHLSFKRAQAVRDWMRDTGdVPERCFAVQGYGESRPVASNATAEGRAQNRR 535
Cdd:PRK10802   95 LRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKG-VSADQISIVSYGKEKPAVLGHDEAAYAKNRR 168
PRK14693 PRK14693
hypothetical protein; Provisional
 439-561 7.93e-03

hypothetical protein; Provisional


Pssm-ID: 173156 [Multi-domain]  Cd Length: 552  Bit Score: 38.98  E-value: 7.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507255136 439 FDTGQWALKPGSTKVLVNALVGIRAKPGWLIVVaGHTDD----VGDERANQHLSFKRAQAVRDWMRDTG---------DV 505
Cdd:PRK14693  376 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVI-GHTDSrpirTSEFPDNQALSEARARNVADELRKTAlpggarapeNA 454

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2507255136 506 PERCFAVQGYGESRPVASNATAEGRAQNRRVEIRLMPQADACQAPDIPLPPSQDER 561
Cdd:PRK14693  455 VQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVLWKVIPDGAQQSGRSLNLQQPEK 510
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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