|
Name |
Accession |
Description |
Interval |
E-value |
| KdpD |
COG2205 |
K+-sensing histidine kinase KdpD [Signal transduction mechanisms]; |
420-657 |
1.73e-28 |
|
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
Pssm-ID: 441807 [Multi-domain] Cd Length: 239 Bit Score: 114.23 E-value: 1.73e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 420 KINDRYNELKYYDKIKEQFFSRLSYDLKDPINSIYSSVQLIDTMSSIGSSELKEYYlkyeNVIIKNCLKVLKTINNLIDA 499
Cdd:COG2205 1 ELEEALEELEELERLKSEFLANVSHELRTPLTSILGAAELLLDEEDLSPEERRELL----EIIRESAERLLRLIEDLLDL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 500 VKIDAHELKVDFKNFNIVYLIEDIISRSVKYANIKNQNLIFDTEIEELIIKCDPNLIEKIILSILSNILMVSFEKSEILI 579
Cdd:COG2205 77 SRLESGKLSLELEPVDLAELLEEAVEELRPLAEEKGIRLELDLPPELPLVYADPELLEQVLANLLDNAIKYSPPGGTITI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 580 SVLERKHYINIVFKYRGNGFN----NSIFNvfnndtkscPFNTYAKD---------LSIAKSLLELQNGKVYVNNKCDDG 646
Cdd:COG2205 157 SARREGDGVRISVSDNGPGIPeeelERIFE---------RFYRGDNSrgeggtglgLAIVKRIVEAHGGTIWVESEPGGG 227
|
250
....*....|.
gi 2508039090 647 NEVVILLPKLK 657
Cdd:COG2205 228 TTFTVTLPLAE 238
|
|
| HATPase_VanS-like |
cd16923 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
563-638 |
4.26e-05 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Enterococcus faecium VanS HK of the VanS-VanR two-component regulatory system (TCS) which activates the transcription of vanH, vanA and vanX vancomycin resistance genes. It also contains Ecoli YedV and PcoS, probable members of YedW-YedV TCS and PcoS-PcoR TCS, repectively. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); most also have a HAMP sensor domain.
Pssm-ID: 340400 [Multi-domain] Cd Length: 102 Bit Score: 42.76 E-value: 4.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 563 ILSNILMVSFEKSEILISVLERKHYINIVFKYRGNGFNNS----IFNVFNNDTKSCPFNTYAKDLSIAKSLLELQNGKVY 638
Cdd:cd16923 8 LLSNAIKYSPENTRIYITSFLTDDVVNIMFKNPSSHPLDFklekLFERFYRGDNSRNTEGAGLGLSIAKAIIELHGGSAS 87
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
46-272 |
8.34e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 45.11 E-value: 8.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 46 QYAKGLYYYLEKNKNKAVRFFKRAINSNkindsHERGKIYLYMTKCYSELDEkylqkkyFNLAEKVF---LEEKSYYYLV 122
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELD-----PETVEAHLALGNLYRRRGE-------YDRAIRIHqklLERDPDRAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 123 QLYLSAMYIEALKKRESqyiEKYLKKTREmvsllKGEETFNIYVCLGEVYFSIKEYNSAKEMFIQAIEYAklnnkyDEIA 202
Cdd:COG2956 79 LLELAQDYLKAGLLDRA---EELLEKLLE-----LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG------PENA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 203 FGICYLKDIFTIDNRLGEAKEMIIKTIEEYKDNLSMMTKLIlvieilEIYLSEKKLGKDVENLIKYLDKN 272
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLA------ELYLEQGDYEEAIAALERALEQD 208
|
|
| PRK10490 |
PRK10490 |
sensor protein KdpD; Provisional |
442-654 |
1.15e-03 |
|
sensor protein KdpD; Provisional
Pssm-ID: 236701 [Multi-domain] Cd Length: 895 Bit Score: 42.33 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 442 LSYDLKDPINSIYSSVQ-LIDTMSSIGSSelkeyYLKYENVIIKNCLKVLKTINNLIDAVKI--DAHELKVDFknfnivY 518
Cdd:PRK10490 671 LSHDLRTPLTVLFGQAEiLTLDLASEGSP-----HARQASEIRQQVLNTTRLVNNLLDMARIqsGGFNLRKEW------L 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 519 LIEDIIS---RSVKYAnIKNQNLIFDTEIEELIIKCDPNLIEKIILSILSNILMVSFEKSEILISVLERKHYINIVFKYR 595
Cdd:PRK10490 740 TLEEVVGsalQMLEPG-LSGHPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGERLQLDVWDN 818
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2508039090 596 GNGF----NNSIFNVFNNDTKSCPFNTYAKDLSIAKSLLELQNGKVYVNNKCDDGNEVVILLP 654
Cdd:PRK10490 819 GPGIppgqEQLIFDKFARGNKESAIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLP 881
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
345-397 |
1.15e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.14 E-value: 1.15e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 2508039090 345 GYICVLEENYQKALDYYNGALKISYRFNIKY---TLRSYHGIKATYKKSGDYEKAL 397
Cdd:pfam13424 10 AAVLRRLGRYDEALELLEKALEIARRLLGPDhplTATTLLNLGRLYLELGRYEEAL 65
|
|
| HisKA |
pfam00512 |
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine ... |
435-504 |
2.82e-03 |
|
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine kinases.
Pssm-ID: 459839 [Multi-domain] Cd Length: 66 Bit Score: 36.81 E-value: 2.82e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 435 KEQFFSRLSYDLKDPINSIYSSVQLidtMSSIGSSELKEYYLKyenVIIKNCLKVLKTINNLIDAVKIDA 504
Cdd:pfam00512 2 KSEFLANLSHELRTPLTAIRGYLEL---LRDEKLDEEQREYLE---TILRSAERLLRLINDLLDLSRIEA 65
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| KdpD |
COG2205 |
K+-sensing histidine kinase KdpD [Signal transduction mechanisms]; |
420-657 |
1.73e-28 |
|
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
Pssm-ID: 441807 [Multi-domain] Cd Length: 239 Bit Score: 114.23 E-value: 1.73e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 420 KINDRYNELKYYDKIKEQFFSRLSYDLKDPINSIYSSVQLIDTMSSIGSSELKEYYlkyeNVIIKNCLKVLKTINNLIDA 499
Cdd:COG2205 1 ELEEALEELEELERLKSEFLANVSHELRTPLTSILGAAELLLDEEDLSPEERRELL----EIIRESAERLLRLIEDLLDL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 500 VKIDAHELKVDFKNFNIVYLIEDIISRSVKYANIKNQNLIFDTEIEELIIKCDPNLIEKIILSILSNILMVSFEKSEILI 579
Cdd:COG2205 77 SRLESGKLSLELEPVDLAELLEEAVEELRPLAEEKGIRLELDLPPELPLVYADPELLEQVLANLLDNAIKYSPPGGTITI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 580 SVLERKHYINIVFKYRGNGFN----NSIFNvfnndtkscPFNTYAKD---------LSIAKSLLELQNGKVYVNNKCDDG 646
Cdd:COG2205 157 SARREGDGVRISVSDNGPGIPeeelERIFE---------RFYRGDNSrgeggtglgLAIVKRIVEAHGGTIWVESEPGGG 227
|
250
....*....|.
gi 2508039090 647 NEVVILLPKLK 657
Cdd:COG2205 228 TTFTVTLPLAE 238
|
|
| WalK |
COG5002 |
Sensor histidine kinase WalK [Signal transduction mechanisms]; |
357-657 |
1.71e-22 |
|
Sensor histidine kinase WalK [Signal transduction mechanisms];
Pssm-ID: 444026 [Multi-domain] Cd Length: 390 Bit Score: 100.01 E-value: 1.71e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 357 ALDYYNGALKISYRFNIKYTLRSYHGIKATYKKSGDYEKALMVTKRMNSILKDINLENEKKVTKINDRYNELKYYDKIKE 436
Cdd:COG5002 87 ALLLLLLLLLLLLALLILLLLLALLILLAALLLLLSELLLLLLLLGRLSLRLSALLLGLLLLAAVERDITELERLEQMRR 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 437 QFFSRLSYDLKDPINSIYSSVQLIDtMSSIGSSELKEYYLkyeNVIIKNCLKVLKTINNLIDAVKIDAHELKVDFKNFNI 516
Cdd:COG5002 167 EFVANVSHELRTPLTSIRGYLELLL-DGAADDPEERREYL---EIILEEAERLSRLVNDLLDLSRLESGELKLEKEPVDL 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 517 VYLIEDIISRSVKYANIKNQNLIFDTEIEELIIKCDPNLIEKIILSILSNILMVSFEKSEILISVLERKHYINIVFKYRG 596
Cdd:COG5002 243 AELLEEVVEELRPLAEEKGIELELDLPEDPLLVLGDPDRLEQVLTNLLDNAIKYTPEGGTITVSLREEDDQVRISVRDTG 322
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 597 NGFN----NSIFNVFNNDTKScpfNTYAKD-----LSIAKSLLELQNGKVYVNNKCDDGNEVVILLPKLK 657
Cdd:COG5002 323 IGIPeedlPRIFERFYRVDKS---RSRETGgtglgLAIVKHIVEAHGGRIWVESEPGKGTTFTITLPLAR 389
|
|
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
421-655 |
2.44e-22 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 98.44 E-value: 2.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 421 INDRYNELKYYDKIKEQFFSRLSYDLKDPINSIYSSVQLidtMSSIGSSELKEYYlkyeNVIIKNCLKVLKTINNLIDAV 500
Cdd:COG0642 96 LLALLLLLEEANEAKSRFLANVSHELRTPLTAIRGYLEL---LLEELDEEQREYL----ETILRSADRLLRLINDLLDLS 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 501 KIDAHELKVDFKNFNIVYLIEDIISRSVKYANIKNQNLIFDTEIEELIIKCDPNLIEKIILSILSNILMVSFEKSEILIS 580
Cdd:COG0642 169 RLEAGKLELEPEPVDLAELLEEVVELFRPLAEEKGIELELDLPDDLPTVRGDPDRLRQVLLNLLSNAIKYTPEGGTVTVS 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 581 VLERKHYINIVFKYRGNGFNNS----IFNvfnndtkscPFNTYAKD---------LSIAKSLLELQNGKVYVNNKCDDGN 647
Cdd:COG0642 249 VRREGDRVRISVEDTGPGIPPEdlerIFE---------PFFRTDPSrrgggtglgLAIVKRIVELHGGTIEVESEPGKGT 319
|
....*...
gi 2508039090 648 EVVILLPK 655
Cdd:COG0642 320 TFTVTLPL 327
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
440-657 |
7.84e-09 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 58.43 E-value: 7.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 440 SRLSYDLKDPINSIYSSVQLIDTMSSIGSSELKEYYLKYENVIIKNClkvlKTINNLIDAVKIDAHELKVDFKNFNIVYL 519
Cdd:COG5000 206 RRIAHEIKNPLTPIQLSAERLRRKLADKLEEDREDLERALDTIIRQV----DRLKRIVDEFLDFARLPEPQLEPVDLNEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 520 IEDIISRSVKYANIKNQNLIFDTEIEELIIKCDPNLIEKIILSILSNILMVSFEKSEILISVLERKHYINIVFKYRGNGF 599
Cdd:COG5000 282 LREVLALYEPALKEKDIRLELDLDPDLPEVLADRDQLEQVLINLLKNAIEAIEEGGEIEVSTRREDGRVRIEVSDNGPGI 361
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2508039090 600 NNSIF-NVFNndtkscPFNTYAKD-----LSIAKSLLELQNGKVYVNNKCDDGNEVVILLPKLK 657
Cdd:COG5000 362 PEEVLeRIFE------PFFTTKPKgtglgLAIVKKIVEEHGGTIELESRPGGGTTFTIRLPLAE 419
|
|
| COG4191 |
COG4191 |
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ... |
449-654 |
1.41e-07 |
|
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];
Pssm-ID: 443345 [Multi-domain] Cd Length: 361 Bit Score: 54.03 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 449 PINSIYSSVQLIdtMSSIGSSELKEYYLKYENVIIKNCLKVLKTINNLIDAVKIDAHELKVdfknFNIVYLIED---IIS 525
Cdd:COG4191 156 PLAAILGNAELL--RRRLEDEPDPEELREALERILEGAERAAEIVRSLRAFSRRDEEEREP----VDLNELIDEaleLLR 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 526 RSVKYANIKnqnLIFDTEIEELIIKCDPNLIEKIILSILSNIL--MVSFEKSEILISVLERKHYINIVFKYRGNGFNNSI 603
Cdd:COG4191 230 PRLKARGIE---VELDLPPDLPPVLGDPGQLEQVLLNLLINAIdaMEEGEGGRITISTRREGDYVVISVRDNGPGIPPEV 306
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 604 FN-VFNndtkscPFNTyAKD--------LSIAKSLLELQNGKVYVNNKCDDGNEVVILLP 654
Cdd:COG4191 307 LErIFE------PFFT-TKPvgkgtglgLSISYGIVEKHGGRIEVESEPGGGTTFTITLP 359
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
445-654 |
2.12e-05 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 47.15 E-value: 2.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 445 DLKDPINSIYSSVQLIdtMSSIGSSELKEYYlkyeNVIIKNCLKvlktINNLIDAVKIDAHELKVDFKNFNIVYLIEDII 524
Cdd:COG3852 145 EIRNPLTGIRGAAQLL--ERELPDDELREYT----QLIIEEADR----LNNLVDRLLSFSRPRPPEREPVNLHEVLERVL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 525 sRSVKYANIKNQNLIFDTEIEELIIKCDPNLIEKIILSILSN----------ILMVSFEKSEILISVLERKHYINIVFKY 594
Cdd:COG3852 215 -ELLRAEAPKNIRIVRDYDPSLPEVLGDPDQLIQVLLNLVRNaaeampeggtITIRTRVERQVTLGGLRPRLYVRIEVID 293
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 595 RGNGFN----NSIFNVFnndtkscpFNTyaKD------LSIAKSLLELQNGKVYVNNKCDDGNEVVILLP 654
Cdd:COG3852 294 NGPGIPeeilDRIFEPF--------FTT--KEkgtglgLAIVQKIVEQHGGTIEVESEPGKGTTFRIYLP 353
|
|
| HATPase_VanS-like |
cd16923 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
563-638 |
4.26e-05 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Enterococcus faecium VanS HK of the VanS-VanR two-component regulatory system (TCS) which activates the transcription of vanH, vanA and vanX vancomycin resistance genes. It also contains Ecoli YedV and PcoS, probable members of YedW-YedV TCS and PcoS-PcoR TCS, repectively. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); most also have a HAMP sensor domain.
Pssm-ID: 340400 [Multi-domain] Cd Length: 102 Bit Score: 42.76 E-value: 4.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 563 ILSNILMVSFEKSEILISVLERKHYINIVFKYRGNGFNNS----IFNVFNNDTKSCPFNTYAKDLSIAKSLLELQNGKVY 638
Cdd:cd16923 8 LLSNAIKYSPENTRIYITSFLTDDVVNIMFKNPSSHPLDFklekLFERFYRGDNSRNTEGAGLGLSIAKAIIELHGGSAS 87
|
|
| KinE |
COG5809 |
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ... |
406-660 |
4.26e-05 |
|
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444511 [Multi-domain] Cd Length: 489 Bit Score: 46.51 E-value: 4.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 406 ILKDI--NLENEKKVTKiNDRYNELKyydkikeQFFSRLSYDLKDPINSIYSSVQLIdtmssigSSELKEYYLKYENVIi 483
Cdd:COG5809 247 IFRDIteRKKLEELLRK-SEKLSVVG-------ELAAGIAHEIRNPLTSLKGFIQLL-------KDTIDEEQKTYLDIM- 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 484 kncLKVLKTINNLI----DAVKIDAhelkVDFKNFNIVYLIEDIISRSVKYANIKNQNLIFDTEIEELIIKCDPNLIEKI 559
Cdd:COG5809 311 ---LSELDRIESIIseflVLAKPQA----IKYEPKDLNTLIEEVIPLLQPQALLKNVQIELELEDDIPDILGDENQLKQV 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 560 ILSILSNILMVSFEKSEILISV-LERKHYINIVFKYRGNGF-NNSIFNVFNndtkscPFNTyAKD------LSIAKSLLE 631
Cdd:COG5809 384 FINLLKNAIEAMPEGGNITIETkAEDDDKVVISVTDEGCGIpEERLKKLGE------PFYT-TKEkgtglgLMVSYKIIE 456
|
250 260
....*....|....*....|....*....
gi 2508039090 632 LQNGKVYVNNKCDDGNEVVILLPKLKFQY 660
Cdd:COG5809 457 EHGGKITVESEVGKGTTFSITLPIKLSEQ 485
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
46-272 |
8.34e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 45.11 E-value: 8.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 46 QYAKGLYYYLEKNKNKAVRFFKRAINSNkindsHERGKIYLYMTKCYSELDEkylqkkyFNLAEKVF---LEEKSYYYLV 122
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELD-----PETVEAHLALGNLYRRRGE-------YDRAIRIHqklLERDPDRAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 123 QLYLSAMYIEALKKRESqyiEKYLKKTREmvsllKGEETFNIYVCLGEVYFSIKEYNSAKEMFIQAIEYAklnnkyDEIA 202
Cdd:COG2956 79 LLELAQDYLKAGLLDRA---EELLEKLLE-----LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG------PENA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 203 FGICYLKDIFTIDNRLGEAKEMIIKTIEEYKDNLSMMTKLIlvieilEIYLSEKKLGKDVENLIKYLDKN 272
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLA------ELYLEQGDYEEAIAALERALEQD 208
|
|
| COG4251 |
COG4251 |
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ... |
406-655 |
1.45e-04 |
|
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];
Pssm-ID: 443393 [Multi-domain] Cd Length: 503 Bit Score: 44.78 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 406 ILKDINLENEKKVTKINDRYNELKYYDKIKEQFFSRLSYDLKDPINSIYSSVQLIDTMSSIGSSELKEYYLKYenvIIKN 485
Cdd:COG4251 253 ELLELRLELEELEEELEERTAELERSNEELEQFAYVASHDLREPLRKISGFSQLLEEDYGDKLDEEGREYLER---IRDA 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 486 CLKVLKTINNLIDAVKIDAHELKvdFKNFNIVYLIEDII---SRSVKYANIKnqnlIfdtEIEEL-IIKCDPNLIEKIIL 561
Cdd:COG4251 330 AERMQALIDDLLAYSRVGRQELE--FEPVDLNELLEEVLedlEPRIEERGAE----I---EVGPLpTVRGDPTLLRQVFQ 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 562 SILSNIL--MVSFEKSEILISVLERKHYINIVFKYRGNGFNNS----IFNVFNndtkscPFNTyaKD--------LSIAK 627
Cdd:COG4251 401 NLISNAIkySRPGEPPRIEIGAEREGGEWVFSVRDNGIGIDPEyaekIFEIFQ------RLHS--RDeyegtgigLAIVK 472
|
250 260
....*....|....*....|....*...
gi 2508039090 628 SLLELQNGKVYVNNKCDDGNEVVILLPK 655
Cdd:COG4251 473 KIVERHGGRIWVESEPGEGATFYFTLPK 500
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
33-272 |
1.92e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.95 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 33 QKYIENEKKYENIQYAKGLYYYLEKNKNKAVRFFKRAINSNKINDSHERGKIYLYmtkcyseLDEKYLQK--KYFNLAEK 110
Cdd:COG2956 66 QKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIY-------EQEGDWEKaiEVLERLLK 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 111 VFLEEKSYYY-LVQLYLSA-MYIEALKkresqYIEKYLKKTREMVsllkgeetfNIYVCLGEVYFSIKEYNSAKEMFIQA 188
Cdd:COG2956 139 LGPENAHAYCeLAELYLEQgDYDEAIE-----ALEKALKLDPDCA---------RALLLLAELYLEQGDYEEAIAALERA 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 189 IEyakLNNKYDEIAFgicYLKDIFTIDNRLGEAKEMIIKTIEEYKDNLsmmtkliLVIEILEIYLSEKKLGKDVENLIKY 268
Cdd:COG2956 205 LE---QDPDYLPALP---RLAELYEKLGDPEEALELLRKALELDPSDD-------LLLALADLLERKEGLEAALALLERQ 271
|
....
gi 2508039090 269 LDKN 272
Cdd:COG2956 272 LRRH 275
|
|
| HATPase_SpaK_NisK-like |
cd16975 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
552-651 |
7.07e-04 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis SpaK and Lactococcus lactis NisK; This family includes histidine kinase-like ATPase (HATPase) domain of two-component sensor histidine kinases similar to Bacillus subtilis SpaK and Lactococcus lactis NisK. SpaK is the histidine kinase (HK) of the SpaK-SpaR two-component regulatory system (TCS), which is involved in the regulation of the biosynthesis of lantibiotic subtilin. NisK is the HK of the NisK-NisR TCS, which is involved in the regulation of the biosynthesis of lantibiotic nisin. SpaK and NisK may function as membrane-associated protein kinases that phosphorylate SpaR and NisR, respectively, in response to environmental signals.
Pssm-ID: 340434 [Multi-domain] Cd Length: 107 Bit Score: 39.75 E-value: 7.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 552 DPNLIEKIILSILSNILMVSFEKSEILISVLERKHYINIVFKYRGNGFN-----NSIFNVFNNDTKSCPFNTYAKDLSIA 626
Cdd:cd16975 1 DTLLLSRALINIISNACQYAPEGGTVSISIYDEEEYLYFEIWDNGHGFSeqdlkKALELFYRDDTSRRSGGHYGMGLYIA 80
|
90 100
....*....|....*....|....*
gi 2508039090 627 KSLLELQNGKVYVNNKCDDGNEVVI 651
Cdd:cd16975 81 KNLVEKHGGSLIIENSQKGGAEVTV 105
|
|
| PRK10490 |
PRK10490 |
sensor protein KdpD; Provisional |
442-654 |
1.15e-03 |
|
sensor protein KdpD; Provisional
Pssm-ID: 236701 [Multi-domain] Cd Length: 895 Bit Score: 42.33 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 442 LSYDLKDPINSIYSSVQ-LIDTMSSIGSSelkeyYLKYENVIIKNCLKVLKTINNLIDAVKI--DAHELKVDFknfnivY 518
Cdd:PRK10490 671 LSHDLRTPLTVLFGQAEiLTLDLASEGSP-----HARQASEIRQQVLNTTRLVNNLLDMARIqsGGFNLRKEW------L 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 519 LIEDIIS---RSVKYAnIKNQNLIFDTEIEELIIKCDPNLIEKIILSILSNILMVSFEKSEILISVLERKHYINIVFKYR 595
Cdd:PRK10490 740 TLEEVVGsalQMLEPG-LSGHPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGERLQLDVWDN 818
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2508039090 596 GNGF----NNSIFNVFNNDTKSCPFNTYAKDLSIAKSLLELQNGKVYVNNKCDDGNEVVILLP 654
Cdd:PRK10490 819 GPGIppgqEQLIFDKFARGNKESAIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLP 881
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
345-397 |
1.15e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.14 E-value: 1.15e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 2508039090 345 GYICVLEENYQKALDYYNGALKISYRFNIKY---TLRSYHGIKATYKKSGDYEKAL 397
Cdd:pfam13424 10 AAVLRRLGRYDEALELLEKALEIARRLLGPDhplTATTLLNLGRLYLELGRYEEAL 65
|
|
| KinA |
COG5805 |
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle ... |
509-655 |
2.42e-03 |
|
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444507 [Multi-domain] Cd Length: 496 Bit Score: 40.87 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 509 VDFKNFNIVYLIEDIISRSVKYANIKNQNLIFDTEIEELIIKCDPNLIEKIILSILSNILMVSFEKSEILISVLERKHYI 588
Cdd:COG5805 349 VNKEKENINELIQDVVTLLETEAILHNIQIRLELLDEDPFIYCDENQIKQVFINLIKNAIEAMPNGGTITIHTEEEDNSV 428
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2508039090 589 NIVFKYRGNGFNNSIFNVFNNdtkscPFNTYAKD-----LSIAKSLLELQNGKVYVNNKCDDGNEVVILLPK 655
Cdd:COG5805 429 IIRVIDEGIGIPEERLKKLGE-----PFFTTKEKgtglgLMVSYKIIENHNGTIDIDSKVGKGTTFTITLPL 495
|
|
| HisKA |
pfam00512 |
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine ... |
435-504 |
2.82e-03 |
|
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine kinases.
Pssm-ID: 459839 [Multi-domain] Cd Length: 66 Bit Score: 36.81 E-value: 2.82e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2508039090 435 KEQFFSRLSYDLKDPINSIYSSVQLidtMSSIGSSELKEYYLKyenVIIKNCLKVLKTINNLIDAVKIDA 504
Cdd:pfam00512 2 KSEFLANLSHELRTPLTAIRGYLEL---LRDEKLDEEQREYLE---TILRSAERLLRLINDLLDLSRIEA 65
|
|
| |
