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Conserved domains on  [gi|2520455863|ref|WP_285383221|]
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hypothetical protein, partial [Pseudomonas aeruginosa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VgrG super family cl34624
Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly ...
 1-81 2.19e-17

Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only];


The actual alignment was detected with superfamily member COG3501:

Pssm-ID: 442724 [Multi-domain]  Cd Length: 743  Bit Score: 74.41  E-value: 2.19e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2520455863   1 RVASVSGDDPRLIPGHAFALEGHPRADFNAWWRPVRVVHRGTQYAGQEEESADAplgvSYDLRAELVPEDVEWRPAPL-P 79
Cdd:COG3501   287 VRVEGESNVRGLAPGRRFTLTGHPRADLNGEYLVTSVTHEGSQNLYSGAGGEDG----GYRNRFTAIPADVPFRPPRRtP 362


                  ..
gi 2520455863  80 RP 81
Cdd:COG3501   363 KP 364
 
Name Accession Description Interval E-value
VgrG COG3501
Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly ...
 1-81 2.19e-17

Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only];


Pssm-ID: 442724 [Multi-domain]  Cd Length: 743  Bit Score: 74.41  E-value: 2.19e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2520455863   1 RVASVSGDDPRLIPGHAFALEGHPRADFNAWWRPVRVVHRGTQYAGQEEESADAplgvSYDLRAELVPEDVEWRPAPL-P 79
Cdd:COG3501   287 VRVEGESNVRGLAPGRRFTLTGHPRADLNGEYLVTSVTHEGSQNLYSGAGGEDG----GYRNRFTAIPADVPFRPPRRtP 362


                  ..
gi 2520455863  80 RP 81
Cdd:COG3501   363 KP 364
VI_Rhs_Vgr TIGR03361
type VI secretion system Vgr family protein; Members of this protein family belong to the Rhs ...
 1-81 9.25e-15

type VI secretion system Vgr family protein; Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.


Pssm-ID: 274542 [Multi-domain]  Cd Length: 513  Bit Score: 67.23  E-value: 9.25e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2520455863   1 RVASVSGDDPRLIPGHAFALEGHPRADFNAWWRPVRVVHRGTQYAGQEEESADaplGVSYDLRAELVPEDVEWRPA-PLP 79
Cdd:TIGR03361 278 KRAEGESNCRRLAPGYLFTLSGHPRAALNREYLVVSVHHHGRQPQVLEESGGS---GAGYRNSFQCIPATVPFRPPrRTP 354


                  ..
gi 2520455863  80 RP 81
Cdd:TIGR03361 355 KP 356
Phage_GPD pfam05954
Phage tail baseplate hub (GPD); This family includes a number of phage late expression gene D ...
 1-43 4.90e-05

Phage tail baseplate hub (GPD); This family includes a number of phage late expression gene D proteins and related bacterial sequences. This family also includes Bacteriophage Mu P proteins and related sequences. This protein forms the phage central baseplate hub.


Pssm-ID: 428689  Cd Length: 302  Bit Score: 39.60  E-value: 4.90e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2520455863   1 RVASVSGDDPRLIPGHAFALEGHP-RADFNAWWRPVRVVHRGTQ 43
Cdd:pfam05954 258 RRFSGESNVRGLAPGRRFTLSGHPrRAAADREYLITRVEHTGSN 301
 
Name Accession Description Interval E-value
VgrG COG3501
Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly ...
 1-81 2.19e-17

Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only];


Pssm-ID: 442724 [Multi-domain]  Cd Length: 743  Bit Score: 74.41  E-value: 2.19e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2520455863   1 RVASVSGDDPRLIPGHAFALEGHPRADFNAWWRPVRVVHRGTQYAGQEEESADAplgvSYDLRAELVPEDVEWRPAPL-P 79
Cdd:COG3501   287 VRVEGESNVRGLAPGRRFTLTGHPRADLNGEYLVTSVTHEGSQNLYSGAGGEDG----GYRNRFTAIPADVPFRPPRRtP 362


                  ..
gi 2520455863  80 RP 81
Cdd:COG3501   363 KP 364
VI_Rhs_Vgr TIGR03361
type VI secretion system Vgr family protein; Members of this protein family belong to the Rhs ...
 1-81 9.25e-15

type VI secretion system Vgr family protein; Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.


Pssm-ID: 274542 [Multi-domain]  Cd Length: 513  Bit Score: 67.23  E-value: 9.25e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2520455863   1 RVASVSGDDPRLIPGHAFALEGHPRADFNAWWRPVRVVHRGTQYAGQEEESADaplGVSYDLRAELVPEDVEWRPA-PLP 79
Cdd:TIGR03361 278 KRAEGESNCRRLAPGYLFTLSGHPRAALNREYLVVSVHHHGRQPQVLEESGGS---GAGYRNSFQCIPATVPFRPPrRTP 354


                  ..
gi 2520455863  80 RP 81
Cdd:TIGR03361 355 KP 356
vgr_GE TIGR01646
Rhs element Vgr protein; This model represents the Vgr family of proteins, associated with ...
 12-81 1.91e-05

Rhs element Vgr protein; This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.


Pssm-ID: 273730 [Multi-domain]  Cd Length: 483  Bit Score: 40.54  E-value: 1.91e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2520455863  12 LIPGHAFALEGHPR-ADFNAWwrpvRVVHRGTQYAGQEEESADAplGVSYDLRAELVPEDVEWRPAPLPRP 81
Cdd:TIGR01646 281 LAPGQLFVLSGHPRnDQNNGY----LIVSAIHSIVQLGWDTGIQ--GYELPNQFIAIEVDVIWRPAATPLP 345
Phage_GPD pfam05954
Phage tail baseplate hub (GPD); This family includes a number of phage late expression gene D ...
 1-43 4.90e-05

Phage tail baseplate hub (GPD); This family includes a number of phage late expression gene D proteins and related bacterial sequences. This family also includes Bacteriophage Mu P proteins and related sequences. This protein forms the phage central baseplate hub.


Pssm-ID: 428689  Cd Length: 302  Bit Score: 39.60  E-value: 4.90e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2520455863   1 RVASVSGDDPRLIPGHAFALEGHP-RADFNAWWRPVRVVHRGTQ 43
Cdd:pfam05954 258 RRFSGESNVRGLAPGRRFTLSGHPrRAAADREYLITRVEHTGSN 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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