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Conserved domains on  [gi|2524723053|ref|WP_286744368|]
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class I SAM-dependent methyltransferase [Pseudoalteromonas sp. UBA2102]

Protein Classification

class I SAM-dependent methyltransferase( domain architecture ID 10563595)

class I SAM-dependent methyltransferase catalyzes the methylation of one or more specific substrates using S-adenosyl-L-methionine (SAM or AdoMet) as the methyl donor

CATH:  2.20.25.110
PubMed:  12504684|12826405
SCOP:  3000118

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
BMT5-like pfam10354
rRNA (uridine-N3-)-methyltransferase BTM5-like; This is the N-terminal domain found in ...
10-184 8.45e-34

rRNA (uridine-N3-)-methyltransferase BTM5-like; This is the N-terminal domain found in proteins from plants, yeast and humans, including 25S rRNA (uridine-N(3))-methyltransferase BMT5 from S. cerevisiae and the poorly characterized Ferredoxin-fold anticodon-binding domain-containing protein 1 from human and Heavy metal-associated isoprenylated plant protein 41 from Arabidopsis. This domain has a characteriztic Rossmann-like fold of S-adenosyl-L-methionine (SAM) binding domains. BTM5 is a SAM-dependent methyltransferase that specifically methylates the N3 position of uridine in 25S rRNA.


:

Pssm-ID: 463056  Cd Length: 162  Bit Score: 120.33  E-value: 8.45e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524723053  10 LTVGDGDLSFSNAVVNHIKPakLVASTYDSAQTIEQKYQHNA--LSSLKKCHVEVINCFDVTDPLCWQKLAahQHSFDVV 87
Cdd:pfam10354   1 LLVGEGDFSFSLSLAENHGP--LTATSLDSEEELLEKYPNAEenLEELEELGVTVLFGVDATKLGLHPRLK--GRRFDRI 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524723053  88 IFQFPlipaFVGREAFESNTQktsmNVLNRALLHQFIKYANKYaLDKSGPMLCYItsKDVKPYREWNIEG-SLSNGLeaK 166
Cdd:pfam10354  77 IFNFP----HVGGKSKDQDRN----IRKNQELLLGFFKSAKEL-LKPGGEIHVTL--FEGEPYDSWNIEDlAKEAGL--V 143
                         170
                  ....*....|....*...
gi 2524723053 167 YAGQMPFDINQFDGYKIR 184
Cdd:pfam10354 144 LIRSFKFDASDYPGYHHK 161
 
Name Accession Description Interval E-value
BMT5-like pfam10354
rRNA (uridine-N3-)-methyltransferase BTM5-like; This is the N-terminal domain found in ...
10-184 8.45e-34

rRNA (uridine-N3-)-methyltransferase BTM5-like; This is the N-terminal domain found in proteins from plants, yeast and humans, including 25S rRNA (uridine-N(3))-methyltransferase BMT5 from S. cerevisiae and the poorly characterized Ferredoxin-fold anticodon-binding domain-containing protein 1 from human and Heavy metal-associated isoprenylated plant protein 41 from Arabidopsis. This domain has a characteriztic Rossmann-like fold of S-adenosyl-L-methionine (SAM) binding domains. BTM5 is a SAM-dependent methyltransferase that specifically methylates the N3 position of uridine in 25S rRNA.


Pssm-ID: 463056  Cd Length: 162  Bit Score: 120.33  E-value: 8.45e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524723053  10 LTVGDGDLSFSNAVVNHIKPakLVASTYDSAQTIEQKYQHNA--LSSLKKCHVEVINCFDVTDPLCWQKLAahQHSFDVV 87
Cdd:pfam10354   1 LLVGEGDFSFSLSLAENHGP--LTATSLDSEEELLEKYPNAEenLEELEELGVTVLFGVDATKLGLHPRLK--GRRFDRI 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524723053  88 IFQFPlipaFVGREAFESNTQktsmNVLNRALLHQFIKYANKYaLDKSGPMLCYItsKDVKPYREWNIEG-SLSNGLeaK 166
Cdd:pfam10354  77 IFNFP----HVGGKSKDQDRN----IRKNQELLLGFFKSAKEL-LKPGGEIHVTL--FEGEPYDSWNIEDlAKEAGL--V 143
                         170
                  ....*....|....*...
gi 2524723053 167 YAGQMPFDINQFDGYKIR 184
Cdd:pfam10354 144 LIRSFKFDASDYPGYHHK 161
 
Name Accession Description Interval E-value
BMT5-like pfam10354
rRNA (uridine-N3-)-methyltransferase BTM5-like; This is the N-terminal domain found in ...
10-184 8.45e-34

rRNA (uridine-N3-)-methyltransferase BTM5-like; This is the N-terminal domain found in proteins from plants, yeast and humans, including 25S rRNA (uridine-N(3))-methyltransferase BMT5 from S. cerevisiae and the poorly characterized Ferredoxin-fold anticodon-binding domain-containing protein 1 from human and Heavy metal-associated isoprenylated plant protein 41 from Arabidopsis. This domain has a characteriztic Rossmann-like fold of S-adenosyl-L-methionine (SAM) binding domains. BTM5 is a SAM-dependent methyltransferase that specifically methylates the N3 position of uridine in 25S rRNA.


Pssm-ID: 463056  Cd Length: 162  Bit Score: 120.33  E-value: 8.45e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524723053  10 LTVGDGDLSFSNAVVNHIKPakLVASTYDSAQTIEQKYQHNA--LSSLKKCHVEVINCFDVTDPLCWQKLAahQHSFDVV 87
Cdd:pfam10354   1 LLVGEGDFSFSLSLAENHGP--LTATSLDSEEELLEKYPNAEenLEELEELGVTVLFGVDATKLGLHPRLK--GRRFDRI 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524723053  88 IFQFPlipaFVGREAFESNTQktsmNVLNRALLHQFIKYANKYaLDKSGPMLCYItsKDVKPYREWNIEG-SLSNGLeaK 166
Cdd:pfam10354  77 IFNFP----HVGGKSKDQDRN----IRKNQELLLGFFKSAKEL-LKPGGEIHVTL--FEGEPYDSWNIEDlAKEAGL--V 143
                         170
                  ....*....|....*...
gi 2524723053 167 YAGQMPFDINQFDGYKIR 184
Cdd:pfam10354 144 LIRSFKFDASDYPGYHHK 161
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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