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Conserved domains on  [gi|2524725961|ref|WP_286747121|]
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MULTISPECIES: NADH-quinone oxidoreductase subunit A [Roseivirga]

Protein Classification

NADH-quinone oxidoreductase subunit A( domain architecture ID 10002876)

NADH-quinone oxidoreductase subunit A (NuoA) is part of the membrane domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 6-131 2.30e-44

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


:

Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 141.80  E-value: 2.30e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961   6 LSEFGVLLIFILGALLFAVVGLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPWA 85
Cdd:COG0838     2 LSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWA 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2524725961  86 LVFGDEalvrgtdwqwAWFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:COG0838    82 VVFREL----------GWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 6-131 2.30e-44

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 141.80  E-value: 2.30e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961   6 LSEFGVLLIFILGALLFAVVGLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPWA 85
Cdd:COG0838     2 LSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWA 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2524725961  86 LVFGDEalvrgtdwqwAWFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:COG0838    82 VVFREL----------GWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
27-130 1.67e-38

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 126.00  E-value: 1.67e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961  27 LLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPWALVFGDealvrgtdwqWAWFAM 106
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRE----------LGWFGF 70

                          90       100
                  ....*....|....*....|....
gi 2524725961 107 TEMFIFIGVLALGLAYAWRKGYLD 130
Cdd:pfam00507  71 VEMLIFIAILLVGLVYAWKKGALE 94
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 5-131 7.30e-37

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 122.67  E-value: 7.30e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961   5 NLSEFGVLLIFILGALLFAVVGLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPW 84
Cdd:PRK06602    4 VLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPW 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2524725961  85 ALVFGDEalvrgtdwqwAWFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:PRK06602   84 AVSFREI----------GWLGFVEAMIFILVLLVGLVYLWRKGALDW 120
 
Name Accession Description Interval E-value
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 6-131 2.30e-44

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 141.80  E-value: 2.30e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961   6 LSEFGVLLIFILGALLFAVVGLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPWA 85
Cdd:COG0838     2 LSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWA 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2524725961  86 LVFGDEalvrgtdwqwAWFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:COG0838    82 VVFREL----------GWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
27-130 1.67e-38

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 126.00  E-value: 1.67e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961  27 LLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPWALVFGDealvrgtdwqWAWFAM 106
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRE----------LGWFGF 70

                          90       100
                  ....*....|....*....|....
gi 2524725961 107 TEMFIFIGVLALGLAYAWRKGYLD 130
Cdd:pfam00507  71 VEMLIFIAILLVGLVYAWKKGALE 94
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 5-131 7.30e-37

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 122.67  E-value: 7.30e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961   5 NLSEFGVLLIFILGALLFAVVGLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPW 84
Cdd:PRK06602    4 VLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPW 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2524725961  85 ALVFGDEalvrgtdwqwAWFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:PRK06602   84 AVSFREI----------GWLGFVEAMIFILVLLVGLVYLWRKGALDW 120
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
11-131 3.29e-31

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 108.29  E-value: 3.29e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961  11 VLLIFILGALLFAVVGLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPWALVFGD 90
Cdd:PRK07756   11 IVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDK 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2524725961  91 EALvrgtdwqwawFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:PRK07756   91 LGL----------FALIEMLIFVVMLLVGLAYAWKKKVLQW 121
ndhC CHL00022
NADH dehydrogenase subunit 3
 6-131 2.40e-29

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 103.53  E-value: 2.40e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961   6 LSEFGVLLIFILGALLFAVVGLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPWA 85
Cdd:CHL00022    4 LYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWA 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2524725961  86 LVFGDEALvrgtdwqwawFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:CHL00022   84 MSFDVLGV----------SAFIEALIFVLILIVGLVYAWRKGALEW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 14-131 4.07e-22

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 85.11  E-value: 4.07e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961  14 IFILGAL--LFAVVGLLASRFIRPNRPNFEKLTTYESG-EDTVGSAWGQ-FNLRFYIVALIFILFEVEIIYLFPWALVFG 89
Cdd:PRK07928    7 ILVLGALaaAFAVVSVVVASLVGPKRYNRAKLEAYECGiEPTPQPAGGGrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFD 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2524725961  90 DealvrgtdwqWAWFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:PRK07928   87 A----------LGVFGLVEMALFMLTVFVAYAYVWRRGGLEW 118
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
9-131 5.68e-22

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 85.10  E-value: 5.68e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961   9 FGVLLIFILGALLFAVVGLLASRFIRP-NRPNFEKL--TTYESGEDTVGSAwGQFNLRFYIVALIFILFEVEIIYLFPWA 85
Cdd:PRK08489   11 FGVFVLLVLTFVAFFLTTRLARFISRKlAQKNTEKLklAIYECGPEPVKQP-NRISSHFYIMALLFILFDVEIVFMFPWA 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2524725961  86 LVFGDealvrgtdwqWAWFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:PRK08489   90 VDFKL----------LGLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 9-131 1.88e-16

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 70.48  E-value: 1.88e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961   9 FGVLLIFILGALLFAVVgLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPWALVF 88
Cdd:MTH00018    1 YGLFILLIFSVVLSALF-SGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLY 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2524725961  89 GdealvrgtdwQWAWFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:MTH00018   80 N----------QIAPFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 9-133 3.83e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 69.50  E-value: 3.83e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961   9 FGVLLIFILGALLFAVVGLLASRFIRpnrpNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPWALVF 88
Cdd:MTH00148    6 LSLLFALILSPVLLLLGLVLSKRSYS----DREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2524725961  89 GDEALVrgtdwqwawFAMTEMFIFIGVLALGLAYAWRKGYLDWVR 133
Cdd:MTH00148   82 GSSFSV---------WSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 9-131 1.22e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 68.39  E-value: 1.22e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961   9 FGVLLIFILGALLFAVVGLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYL--FPWAL 86
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLlpLPWSN 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2524725961  87 VFGdealvrgtdwqwaWFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:MTH00203   81 QLS-------------SLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 8-131 3.86e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 67.04  E-value: 3.86e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961   8 EFGVLLIFILGALLFAVVGLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPWALV 87
Cdd:MTH00055    4 EFLGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVV 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2524725961  88 FGdealvrgtdwQWAWFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:MTH00055   84 YN----------QIGLFGFWVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 9-131 1.12e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 66.11  E-value: 1.12e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961   9 FGVLLIFILGALLFAVVGLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPWALVF 88
Cdd:MTH00030   10 FSTLLGVGIILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVF 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2524725961  89 GdealvrgtdwQWAWFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:MTH00030   90 N----------QLNLFSFWIVYTFLIVLAIGLAYEWIKGGLEW 122
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 38-131 9.01e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 63.40  E-value: 9.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961  38 PNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPwaLVFGDEALVRGTDWQWAwfamtemFIFIGVLA 117
Cdd:MTH00136   30 PDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLP--LPWGDQLPSPLLTFFWA-------TAVLILLT 100

                          90
                  ....*....|....
gi 2524725961 118 LGLAYAWRKGYLDW 131
Cdd:MTH00136  101 LGLIYEWLQGGLEW 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 12-132 2.91e-13

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 62.31  E-value: 2.91e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961  12 LLIFILGALLFAVVGLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFP--WALVFG 89
Cdd:MTH00042    4 LIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPlpPATLIT 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2524725961  90 DEAlvrgtdwqwawFAMTEMFIFIGVLALGLAYAWRKGYLDWV 132
Cdd:MTH00042   84 NPS-----------TLLPISLIFLIILTIGLVYEWVNGGLEWA 115
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 12-131 4.17e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 61.72  E-value: 4.17e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961  12 LLIFILGALLFAVVGLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPWALVFgde 91
Cdd:MTH00161    3 LIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIF--- 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2524725961  92 alvrGTDWQWAWFAMTEMFIFIgvLALGLAYAWRKGYLDW 131
Cdd:MTH00161   80 ----KTSNMMSWLITSSFFILI--LLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 6-132 9.23e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 60.78  E-value: 9.23e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961   6 LSEFGVLLIFILGALLFAVVGLLASRFIRpnrpNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPWA 85
Cdd:MTH00202    3 LILFMSILSILISSLLFLVSWMLSFRSLM----DREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLP 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2524725961  86 LVFGdealvrgtdWQWAWFAMTEMFIFIGVLALGLAYAWRKGYLDWV 132
Cdd:MTH00202   79 LVLK---------SSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 11-131 2.42e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 59.89  E-value: 2.42e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961  11 VLLIFILGALLFAVVGLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFP--WAlvf 88
Cdd:MTH00113    2 NLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWA--- 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2524725961  89 gdealvrgTDWQWAWFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:MTH00113   79 --------INLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 12-131 2.80e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 59.62  E-value: 2.80e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961  12 LLIFILGALLFAVVGLLASRFIRPNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLF--PWALVFG 89
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQLN 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2524725961  90 DEALVrgtdwqwawfAMTEMFIFIgVLALGLAYAWRKGYLDW 131
Cdd:MTH00069   82 TPTNT----------LFWSTLILI-LLTLGLIYEWIQGGLEW 112
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 41-132 3.03e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 56.87  E-value: 3.03e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961  41 EKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLF--PWALVFGDEALVrgtdwqwawfaMTEMFIFIGVLAL 118
Cdd:MTH00106   32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLplPWASQTNNLNTM-----------LTMALLLISLLAL 100

                          90
                  ....*....|....
gi 2524725961 119 GLAYAWRKGYLDWV 132
Cdd:MTH00106  101 SLAYEWTQKGLEWT 114
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 5-131 2.26e-10

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 54.86  E-value: 2.26e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961   5 NLSEFGVLLIFILGALLFAVVGLLASRfirpNRPNFEKLTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPW 84
Cdd:MTH00012    2 SLMMIPMMISLILPPLVLGAAWVLAAR----STADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPV 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2524725961  85 AlvfgdeALVRGTDwqwAWFAMTEMFIFIGVLALGLAYAWRKGYLDW 131
Cdd:MTH00012   78 P------TILMTST---SKTVVYTSILFLLILVIGLIHEWREGSLDW 115
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 43-133 2.57e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 47.11  E-value: 2.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524725961  43 LTTYESGEDTVGSAWGQFNLRFYIVALIFILFEVEIIYLFPWALVFGDEALVRgtdwqwawfaMTEMFIFIGVLALGLAY 122
Cdd:PRK06432   64 LEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIP----------FIETLIFLAMPLFAVYY 133

                          90
                  ....*....|.
gi 2524725961 123 AWRKGYLDWVR 133
Cdd:PRK06432  134 AFKMGYMRWLK 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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